Wall clock time and date at job start Wed Apr 1 2020 01:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00164 * 2 1 4 4 H 1.48496 * 109.46872 * 270.00143 * 3 2 1 5 5 H 1.48500 * 109.46904 * 29.99934 * 3 2 1 6 6 H 1.48496 * 109.47110 * 149.99670 * 3 2 1 7 7 C 1.38808 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00408 * 162.50716 * 7 2 1 9 9 N 1.36942 * 119.99991 * 342.22560 * 7 2 1 10 10 C 1.46886 * 120.46639 * 331.57165 * 9 7 2 11 11 C 1.52854 * 109.01644 * 235.48501 * 10 9 7 12 12 C 1.52669 * 109.17751 * 307.81614 * 11 10 9 13 13 C 1.53484 * 113.62695 * 188.98920 * 12 11 10 14 14 N 1.47671 * 85.98979 * 137.70881 * 13 12 11 15 15 C 1.34772 * 134.46051 * 155.70199 * 14 13 12 16 16 O 1.21515 * 120.00291 * 179.97438 * 15 14 13 17 17 C 1.48174 * 119.99476 * 359.97438 * 15 14 13 18 18 C 1.39307 * 119.71712 * 179.72836 * 17 15 14 19 19 C 1.38597 * 119.05722 * 179.74975 * 18 17 15 20 20 C 1.38633 * 118.48539 * 0.51282 * 19 18 17 21 21 C 1.50697 * 120.32362 * 179.70892 * 20 19 18 22 22 C 1.52999 * 117.49625 * 188.64197 * 21 20 19 23 23 C 1.53002 * 117.50071 * 120.01818 * 21 20 19 24 24 C 1.38564 * 119.35058 * 359.72444 * 20 19 18 25 25 N 1.31523 * 120.90300 * 0.02708 * 24 20 19 26 26 C 1.47671 * 91.08601 * 335.68293 * 14 13 12 27 27 C 1.52678 * 113.18563 * 57.46055 * 12 11 10 28 28 C 1.46878 * 120.46612 * 151.83908 * 9 7 2 29 29 H 0.97006 * 119.99997 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58454 * 355.30644 * 10 9 7 31 31 H 1.08997 * 109.59165 * 115.74074 * 10 9 7 32 32 H 1.09002 * 109.61191 * 187.83719 * 11 10 9 33 33 H 1.09006 * 109.44979 * 67.69241 * 11 10 9 34 34 H 1.08995 * 113.79321 * 251.97690 * 13 12 11 35 35 H 1.09006 * 113.78568 * 23.44413 * 13 12 11 36 36 H 1.07999 * 120.47714 * 359.97357 * 18 17 15 37 37 H 1.07992 * 120.76073 * 180.23823 * 19 18 17 38 38 H 1.09003 * 115.54719 * 334.34810 * 21 20 19 39 39 H 1.09000 * 117.50083 * 0.02562 * 22 21 20 40 40 H 1.08999 * 117.49794 * 145.01913 * 22 21 20 41 41 H 1.08992 * 117.49932 * 214.97637 * 23 21 20 42 42 H 1.08995 * 117.49577 * 359.97438 * 23 21 20 43 43 H 1.07999 * 119.54360 * 180.02562 * 24 20 19 44 44 H 1.09000 * 113.79635 * 270.05104 * 26 14 13 45 45 H 1.09001 * 113.79504 * 138.57588 * 26 14 13 46 46 H 1.08994 * 109.53131 * 182.52489 * 27 12 11 47 47 H 1.08993 * 109.58843 * 62.33420 * 27 12 11 48 48 H 1.09003 * 109.58990 * 244.26002 * 28 9 7 49 49 H 1.09003 * 109.58843 * 4.69859 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0527 -1.2239 -0.2806 9 7 1.3745 -2.3596 0.3631 10 6 0.2470 -2.3268 1.3039 11 6 0.5494 -3.2594 2.4766 12 6 0.9354 -4.6345 1.9372 13 6 1.0489 -5.7120 3.0243 14 7 0.3481 -6.5981 2.0733 15 6 0.2840 -7.9329 1.8986 16 8 -0.3958 -8.3967 1.0045 17 6 1.0426 -8.8349 2.7967 18 6 0.9676 -10.2139 2.6143 19 6 1.6869 -11.0447 3.4590 20 6 2.4479 -10.4673 4.4638 21 6 3.2409 -11.3318 5.4096 22 6 3.8929 -10.6482 6.6132 23 6 4.7573 -11.1315 5.4469 24 6 2.4718 -9.0877 4.5900 25 7 1.7834 -8.3224 3.7713 26 6 -0.2547 -5.4356 1.3908 27 6 2.1312 -4.5942 0.9888 28 6 1.8144 -3.6520 -0.1788 29 1 -0.4850 0.8401 0.0004 30 1 0.1088 -1.3107 1.6734 31 1 -0.6597 -2.6609 0.7995 32 1 -0.3339 -3.3507 3.1087 33 1 1.3749 -2.8522 3.0605 34 1 2.0737 -6.0169 3.2359 35 1 0.4747 -5.4909 3.9241 36 1 0.3606 -10.6298 1.8238 37 1 1.6519 -12.1174 3.3400 38 1 2.8635 -12.3448 5.5492 39 1 3.7478 -9.5733 6.7211 40 1 3.9444 -11.2114 7.5450 41 1 5.3774 -12.0126 5.6114 42 1 5.1813 -10.3748 4.7870 43 1 3.0639 -8.6346 5.3714 44 1 -1.2162 -5.1323 1.8052 45 1 -0.2658 -5.5207 0.3042 46 1 2.3266 -5.5958 0.6060 47 1 3.0090 -4.2304 1.5227 48 1 1.0205 -4.0814 -0.7898 49 1 2.7085 -3.5086 -0.7855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050743642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:28 Heat of formation + Delta-G solvation = 71.401247 kcal Electronic energy + Delta-G solvation = -29477.462608 eV Core-core repulsion = 25599.479549 eV Total energy + Delta-G solvation = -3877.983060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.10963 -41.26310 -39.50777 -37.92824 -37.50525 -34.31529 -33.59115 -32.43815 -31.94248 -31.34226 -28.73912 -27.53106 -26.14179 -25.38636 -24.92862 -23.94523 -23.13240 -22.61198 -21.79623 -20.93481 -19.56404 -18.64282 -18.24306 -18.10852 -17.06945 -16.90161 -16.78325 -16.51094 -15.84172 -15.73618 -15.63135 -15.51333 -15.24076 -14.99188 -14.72589 -14.49690 -14.25903 -13.91395 -13.87896 -13.67554 -13.32183 -13.05586 -12.93750 -12.90118 -12.73746 -12.54264 -12.32419 -12.26999 -12.03421 -12.00956 -11.80932 -11.56018 -11.33381 -11.28856 -11.23676 -11.01766 -10.81639 -10.49282 -10.38592 -9.95384 -9.65109 -8.62688 -7.84093 -5.29337 -0.46396 0.20256 1.48607 1.50176 1.58893 1.59929 1.72712 2.54055 2.67531 2.92380 3.10539 3.26370 3.40268 3.50485 3.61022 3.71101 3.83687 3.87277 3.87847 4.00685 4.02771 4.13434 4.22621 4.26190 4.32114 4.40601 4.49760 4.56805 4.64045 4.68878 4.72365 4.80471 4.83058 4.87564 4.93407 5.02119 5.04287 5.05364 5.09914 5.14485 5.19198 5.28302 5.28687 5.35879 5.36878 5.55125 5.56155 5.68621 5.82299 6.43324 6.60382 6.62820 7.02038 7.19130 7.90277 8.41661 9.21720 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019650 B = 0.002340 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.593979 B =11962.253762 C =12782.108641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.049 4.049 3 Si 0.965 3.035 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.110 4.110 12 C -0.077 4.077 13 C 0.140 3.860 14 N -0.620 5.620 15 C 0.578 3.422 16 O -0.583 6.583 17 C 0.053 3.947 18 C -0.114 4.114 19 C -0.074 4.074 20 C -0.072 4.072 21 C -0.128 4.128 22 C -0.169 4.169 23 C -0.164 4.164 24 C 0.087 3.913 25 N -0.459 5.459 26 C 0.114 3.886 27 C -0.091 4.091 28 C 0.145 3.855 29 H 0.250 0.750 30 H 0.057 0.943 31 H -0.004 1.004 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.144 0.856 37 H 0.173 0.827 38 H 0.134 0.866 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.182 0.818 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.007 0.993 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.611 -24.594 16.324 30.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.391 4.391 8 H 0.081 0.919 9 N -0.330 5.330 10 C 0.051 3.949 11 C -0.149 4.149 12 C -0.078 4.078 13 C 0.019 3.981 14 N -0.351 5.351 15 C 0.368 3.632 16 O -0.464 6.464 17 C -0.084 4.084 18 C -0.135 4.135 19 C -0.099 4.099 20 C -0.074 4.074 21 C -0.147 4.147 22 C -0.206 4.206 23 C -0.201 4.201 24 C -0.073 4.073 25 N -0.170 5.170 26 C -0.008 4.008 27 C -0.130 4.130 28 C 0.019 3.981 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.014 0.986 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.162 0.838 37 H 0.191 0.809 38 H 0.152 0.848 39 H 0.120 0.880 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.109 0.891 43 H 0.199 0.801 44 H 0.113 0.887 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.025 0.975 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.144 -23.969 15.870 29.621 hybrid contribution -0.235 0.311 -0.826 0.914 sum 6.909 -23.658 15.044 28.875 Atomic orbital electron populations 1.70189 1.06617 1.25801 1.55304 1.25760 0.95989 1.01383 1.01356 0.85324 0.78201 0.79763 0.77424 1.21488 1.21809 1.19459 1.19472 0.92949 0.86177 1.40545 0.91857 1.44259 1.37365 1.01848 1.49562 1.20517 0.87732 0.98079 0.88612 1.21820 1.01412 0.93522 0.98139 1.21942 0.95122 0.94461 0.96325 1.23366 0.98924 0.83330 0.92526 1.49949 1.47731 1.03125 1.34331 1.18044 0.80669 0.81015 0.83464 1.90734 1.44356 1.75891 1.35437 1.20842 0.99100 0.92395 0.96067 1.22205 0.98747 0.92496 1.00060 1.21736 0.93720 1.01995 0.92468 1.20666 0.96240 0.94790 0.95734 1.21070 0.94649 1.00010 0.98980 1.23211 1.02506 1.01669 0.93219 1.23125 0.91130 1.04207 1.01636 1.23165 0.96406 0.90554 0.97162 1.67636 1.05503 1.40965 1.02922 1.23340 0.97970 0.81281 0.98245 1.21533 0.96590 0.98361 0.96526 1.20970 0.96851 0.86261 0.94009 0.94130 0.92498 0.98586 0.90315 0.91642 0.88361 0.88103 0.83786 0.80949 0.84826 0.87964 0.86674 0.86756 0.89101 0.80088 0.88734 0.91959 0.92383 0.91192 0.97542 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.09 11.22 21.65 0.24 -54.84 16 2 C -0.05 -2.76 4.89 84.86 0.41 -2.34 16 3 Si 0.96 44.75 29.59 68.60 2.03 46.78 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.26 -14.35 9.56 84.03 0.80 -13.55 16 8 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 9 N -0.61 -30.35 2.97 -699.68 -2.08 -32.43 16 10 C 0.18 8.24 5.21 86.26 0.45 8.69 16 11 C -0.11 -3.79 5.24 30.44 0.16 -3.63 16 12 C -0.08 -2.45 0.77 -52.03 -0.04 -2.49 16 13 C 0.14 3.68 6.73 86.31 0.58 4.26 16 14 N -0.62 -19.39 3.44 -845.44 -2.91 -22.30 16 15 C 0.58 19.33 8.04 86.88 0.70 20.03 16 16 O -0.58 -23.12 17.05 -3.76 -0.06 -23.18 16 17 C 0.05 1.41 6.75 41.91 0.28 1.69 16 18 C -0.11 -2.47 9.63 22.61 0.22 -2.25 16 19 C -0.07 -1.07 9.88 22.45 0.22 -0.85 16 20 C -0.07 -0.97 5.63 -19.69 -0.11 -1.08 16 21 C -0.13 -1.00 6.06 -11.54 -0.07 -1.07 16 22 C -0.17 -1.01 9.87 30.60 0.30 -0.71 16 23 C -0.16 -1.11 10.17 30.60 0.31 -0.80 16 24 C 0.09 1.45 10.47 84.82 0.89 2.34 16 25 N -0.46 -10.67 7.90 -184.91 -1.46 -12.14 16 26 C 0.11 3.75 7.62 86.32 0.66 4.41 16 27 C -0.09 -3.13 5.22 30.60 0.16 -2.97 16 28 C 0.14 6.17 6.38 86.42 0.55 6.72 16 29 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 30 H 0.06 3.03 5.98 -2.39 -0.01 3.02 16 31 H 0.00 -0.20 8.07 -2.39 -0.02 -0.22 16 32 H 0.08 2.33 8.12 -2.39 -0.02 2.31 16 33 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.10 2.46 7.15 -2.39 -0.02 2.44 16 35 H 0.10 2.30 8.09 -2.38 -0.02 2.28 16 36 H 0.14 3.14 7.64 -2.91 -0.02 3.11 16 37 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 38 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.10 0.60 6.20 -2.39 -0.01 0.59 16 40 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.18 2.06 6.03 -2.91 -0.02 2.05 16 44 H 0.09 2.92 8.07 -2.39 -0.02 2.90 16 45 H 0.06 2.30 7.41 -2.39 -0.02 2.29 16 46 H 0.06 1.92 8.01 -2.39 -0.02 1.90 16 47 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.01 0.30 7.49 -2.39 -0.02 0.28 16 49 H 0.05 2.19 7.92 -2.39 -0.02 2.17 16 Total: -1.00 -71.41 390.91 3.19 -68.22 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.95 Total: 13.49 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 6.48 Total: 16.41 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.20 Total: -121.70 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.06 Total: -23.18 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.41 3.19 -68.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050743642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.620 kcal (2) G-P(sol) polarization free energy of solvation -71.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds