Wall clock time and date at job start Wed Apr 1 2020 00:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00300 * 2 1 4 4 H 1.48502 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46892 * 300.00216 * 3 2 1 6 6 H 1.48504 * 109.46794 * 59.99771 * 3 2 1 7 7 C 1.38817 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99968 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99806 * 0.02562 * 7 2 1 10 10 C 1.47147 * 125.57927 * 359.96753 * 9 7 2 11 11 C 1.54629 * 107.37630 * 179.14015 * 10 9 7 12 12 C 1.53506 * 102.70442 * 339.38283 * 11 10 9 13 13 C 1.51785 * 117.00508 * 164.16560 * 12 11 10 14 14 N 1.47388 * 87.51677 * 92.92978 * 13 12 11 15 15 C 1.34783 * 135.85446 * 205.66855 * 14 13 12 16 16 O 1.21280 * 119.99635 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00254 * 180.02562 * 15 14 13 18 18 H 1.09005 * 109.25320 * 300.52503 * 17 15 14 19 19 C 1.52804 * 109.22579 * 181.09367 * 17 15 14 20 20 C 1.53321 * 108.39382 * 188.43850 * 19 17 15 21 21 C 1.52773 * 108.39338 * 69.81495 * 20 19 17 22 22 C 1.50488 * 110.56008 * 309.12297 * 21 20 19 23 23 C 1.39188 * 117.97811 * 197.59441 * 22 21 20 24 24 C 1.38406 * 118.86358 * 180.24137 * 23 22 21 25 25 C 1.38241 * 118.84907 * 0.04356 * 24 23 22 26 26 N 1.31509 * 120.60535 * 359.87324 * 25 24 23 27 27 C 1.32699 * 122.40254 * 359.93133 * 26 25 24 28 28 C 1.47387 * 88.29615 * 25.92340 * 14 13 12 29 29 C 1.47757 * 125.58114 * 180.02562 * 9 7 2 30 30 H 0.97000 * 120.00192 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.86348 * 59.68906 * 10 9 7 32 32 H 1.09005 * 109.97539 * 298.65147 * 10 9 7 33 33 H 1.09003 * 110.76475 * 221.08688 * 11 10 9 34 34 H 1.08993 * 110.76950 * 97.69215 * 11 10 9 35 35 H 1.09001 * 113.53963 * 338.27213 * 13 12 11 36 36 H 1.08994 * 113.54817 * 207.59130 * 13 12 11 37 37 H 1.09002 * 109.68916 * 68.75221 * 19 17 15 38 38 H 1.09000 * 109.63669 * 308.09496 * 19 17 15 39 39 H 1.09002 * 109.68792 * 310.07682 * 20 19 17 40 40 H 1.09002 * 109.68368 * 189.54979 * 20 19 17 41 41 H 1.08997 * 109.25705 * 69.40137 * 21 20 19 42 42 H 1.09003 * 109.25668 * 188.84223 * 21 20 19 43 43 H 1.07994 * 120.56271 * 0.25737 * 23 22 21 44 44 H 1.08001 * 120.57657 * 180.02562 * 24 23 22 45 45 H 1.07996 * 119.69308 * 179.89377 * 25 24 23 46 46 H 1.09001 * 113.54643 * 88.74027 * 28 14 13 47 47 H 1.08998 * 113.54691 * 219.41934 * 28 14 13 48 48 H 1.08991 * 110.40479 * 83.44932 * 29 9 7 49 49 H 1.09002 * 110.39949 * 321.02632 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1389 -2.5312 0.0007 11 6 -0.4550 -4.0446 -0.0215 12 6 0.8471 -4.6536 -0.5600 13 6 1.0380 -6.1478 -0.3734 14 7 0.4462 -6.3257 -1.7114 15 6 -0.2201 -7.3070 -2.3516 16 8 -0.4490 -8.3543 -1.7846 17 6 -0.6797 -7.1031 -3.7722 18 1 -1.3513 -6.2455 -3.8132 19 6 -1.4265 -8.3502 -4.2434 20 6 -1.6991 -8.2122 -5.7458 21 6 -0.3702 -8.3317 -6.4898 22 6 0.6521 -7.3988 -5.8989 23 6 1.7782 -7.0975 -6.6596 24 6 2.7326 -6.2454 -6.1318 25 6 2.5348 -5.7239 -4.8669 26 7 1.4574 -6.0297 -4.1776 27 6 0.5175 -6.8392 -4.6490 28 6 0.9058 -4.9662 -2.0472 29 6 1.9364 -3.7335 0.0016 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5579 -2.0522 -0.8842 32 1 -0.5572 -2.0785 0.8998 33 1 -1.2871 -4.2558 -0.6933 34 1 -0.6660 -4.4102 0.9834 35 1 0.4321 -6.5671 0.4299 36 1 2.0838 -6.4494 -0.3162 37 1 -2.3709 -8.4376 -3.7061 38 1 -0.8149 -9.2339 -4.0616 39 1 -2.1480 -7.2401 -5.9498 40 1 -2.3743 -9.0038 -6.0707 41 1 -0.0072 -9.3568 -6.4151 42 1 -0.5220 -8.0804 -7.5396 43 1 1.9047 -7.5212 -7.6448 44 1 3.6167 -5.9926 -6.6982 45 1 3.2716 -5.0590 -4.4411 46 1 1.9147 -4.9368 -2.4588 47 1 0.1896 -4.3988 -2.6415 48 1 2.1989 -4.0308 1.0168 49 1 2.8172 -3.7514 -0.6403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072909071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:32 Heat of formation + Delta-G solvation = 73.303740 kcal Electronic energy + Delta-G solvation = -30708.570661 eV Core-core repulsion = 26830.670100 eV Total energy + Delta-G solvation = -3877.900561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.25193 -40.09456 -38.37321 -36.48117 -35.48110 -33.62265 -32.09196 -30.74864 -30.33902 -29.27111 -28.46117 -25.93409 -25.67960 -24.61754 -23.65372 -23.45978 -22.76442 -20.25936 -20.14238 -19.16482 -18.09856 -17.26452 -16.75275 -16.61860 -16.53563 -15.86465 -15.46063 -15.08525 -14.70058 -14.44495 -14.30349 -14.21158 -13.86550 -13.73664 -13.41799 -13.24222 -12.88308 -12.79189 -12.44021 -12.29014 -12.18949 -11.99012 -11.81845 -11.63478 -11.37389 -11.12684 -10.93678 -10.87952 -10.81550 -10.55780 -10.31310 -10.16259 -10.04089 -9.89303 -9.79270 -9.63635 -9.47343 -9.20494 -8.89176 -8.56579 -8.24313 -6.78587 -5.67834 -3.00766 0.90154 1.07271 2.80425 3.16599 3.41203 3.46749 3.49194 3.60509 3.99621 4.29605 4.47161 4.51020 4.54946 4.59218 4.73958 4.82260 4.87987 4.99213 5.05406 5.15107 5.20157 5.26244 5.37839 5.47114 5.51074 5.53748 5.55500 5.62232 5.68613 5.76627 5.78318 5.87659 5.91270 5.96279 5.98466 6.05972 6.10354 6.14787 6.25244 6.33515 6.45284 6.52983 6.55562 6.64577 6.80035 6.82173 7.60299 7.67954 7.81958 7.86937 8.10300 8.28902 8.41686 9.25475 9.85831 10.52454 11.43821 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.003211 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.620421 B = 8717.138871 C = 9638.637025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.181 3.819 11 C -0.116 4.116 12 C -0.119 4.119 13 C 0.120 3.880 14 N -0.623 5.623 15 C 0.552 3.448 16 O -0.558 6.558 17 C -0.051 4.051 18 H 0.112 0.888 19 C -0.099 4.099 20 C -0.121 4.121 21 C -0.077 4.077 22 C -0.122 4.122 23 C -0.078 4.078 24 C -0.172 4.172 25 C 0.106 3.894 26 N -0.473 5.473 27 C 0.138 3.862 28 C 0.162 3.838 29 C 0.156 3.844 30 H 0.251 0.749 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.160 0.840 46 H 0.094 0.906 47 H 0.067 0.933 48 H 0.023 0.977 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -16.507 -14.483 21.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.056 3.944 11 C -0.154 4.154 12 C -0.121 4.121 13 C -0.003 4.003 14 N -0.355 5.355 15 C 0.341 3.659 16 O -0.437 6.437 17 C -0.073 4.073 18 H 0.130 0.870 19 C -0.137 4.137 20 C -0.159 4.159 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.104 4.104 24 C -0.192 4.192 25 C -0.054 4.054 26 N -0.181 5.181 27 C 0.003 3.997 28 C 0.040 3.960 29 C 0.029 3.971 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.177 0.823 46 H 0.112 0.888 47 H 0.086 0.914 48 H 0.041 0.959 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.127 -16.634 -13.473 21.406 hybrid contribution 0.746 0.724 -0.949 1.408 sum 0.874 -15.910 -14.422 21.491 Atomic orbital electron populations 1.69976 1.04849 1.24777 1.57338 1.24783 0.95680 0.97571 1.02475 0.86076 0.78716 0.83978 0.77182 1.20543 1.21866 1.21857 1.19094 0.90430 0.82388 1.43366 0.90414 1.44542 1.01622 0.99718 1.87202 1.21187 0.84246 0.87939 1.00981 1.22430 0.94447 0.99140 0.99412 1.22379 0.99397 0.93135 0.97140 1.22706 0.98080 0.94445 0.85104 1.49666 1.53238 1.16689 1.15901 1.19575 0.77940 0.81798 0.86589 1.90665 1.58768 1.26209 1.68067 1.20129 0.94504 1.01418 0.91200 0.87033 1.21426 1.00787 0.96340 0.95173 1.21610 0.96579 1.02777 0.94917 1.20445 0.93457 0.98206 0.99381 1.20403 0.97224 0.99791 0.94947 1.21559 0.92893 0.96317 0.99653 1.22127 1.00475 0.99020 0.97570 1.22750 0.94444 0.96860 0.91316 1.67918 1.01942 1.12650 1.35628 1.20626 0.94230 0.93265 0.91590 1.22683 1.00580 0.78557 0.94197 1.21101 0.93330 0.85678 0.96979 0.93899 0.93676 0.93987 0.92330 0.92119 0.90893 0.90253 0.90158 0.90438 0.91281 0.90608 0.90291 0.90478 0.84947 0.84733 0.82306 0.88780 0.91425 0.95902 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.30 55.49 0.57 -26.27 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.22 -6.12 10.28 -15.06 -0.15 -6.28 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.04 3.41 -170.53 -0.58 -15.62 16 10 C 0.18 4.35 5.39 -2.83 -0.02 4.33 16 11 C -0.12 -2.20 6.40 -25.61 -0.16 -2.36 16 12 C -0.12 -2.05 1.06 -155.22 -0.16 -2.21 16 13 C 0.12 1.87 8.02 -7.48 -0.06 1.81 16 14 N -0.62 -9.99 3.39 -185.73 -0.63 -10.61 16 15 C 0.55 9.00 7.29 -10.98 -0.08 8.92 16 16 O -0.56 -10.62 16.59 5.56 0.09 -10.53 16 17 C -0.05 -0.65 2.60 -93.01 -0.24 -0.90 16 18 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 19 C -0.10 -1.05 4.66 -26.67 -0.12 -1.18 16 20 C -0.12 -0.94 5.98 -26.68 -0.16 -1.10 16 21 C -0.08 -0.59 5.69 -28.10 -0.16 -0.75 16 22 C -0.12 -1.24 5.74 -104.60 -0.60 -1.84 16 23 C -0.08 -0.69 9.75 -39.17 -0.38 -1.07 16 24 C -0.17 -1.55 10.12 -39.52 -0.40 -1.95 16 25 C 0.11 1.17 10.82 -17.69 -0.19 0.97 16 26 N -0.47 -6.28 5.18 -9.51 -0.05 -6.33 16 27 C 0.14 1.74 6.19 -82.44 -0.51 1.23 16 28 C 0.16 2.61 5.28 -7.33 -0.04 2.57 16 29 C 0.16 3.09 6.70 -3.22 -0.02 3.07 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.05 1.20 7.39 -51.93 -0.38 0.81 16 32 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 33 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.92 7.77 -51.93 -0.40 0.52 16 39 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.09 1.46 6.37 -51.93 -0.33 1.13 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.04 0.78 8.00 -51.93 -0.42 0.36 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -33.02 382.10 -11.23 -44.25 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.80 Total: -0.40 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -3.56 Total: 2.92 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.69 Total: -58.83 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.02 -11.23 -44.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072909071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.550 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds