Wall clock time and date at job start Wed Apr 1 2020 00:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00300 * 2 1 4 4 H 1.48502 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46892 * 300.00216 * 3 2 1 6 6 H 1.48504 * 109.46794 * 59.99771 * 3 2 1 7 7 C 1.38817 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99968 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99806 * 0.02562 * 7 2 1 10 10 C 1.47147 * 125.57927 * 359.96753 * 9 7 2 11 11 C 1.54629 * 107.37630 * 179.14015 * 10 9 7 12 12 C 1.53506 * 102.70442 * 339.38283 * 11 10 9 13 13 C 1.51785 * 117.00508 * 164.16560 * 12 11 10 14 14 N 1.47388 * 87.51677 * 92.92978 * 13 12 11 15 15 C 1.34783 * 135.85446 * 205.66855 * 14 13 12 16 16 O 1.21280 * 119.99635 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00254 * 180.02562 * 15 14 13 18 18 H 1.09005 * 109.25320 * 300.52503 * 17 15 14 19 19 C 1.52804 * 109.22579 * 181.09367 * 17 15 14 20 20 C 1.53321 * 108.39382 * 188.43850 * 19 17 15 21 21 C 1.52773 * 108.39338 * 69.81495 * 20 19 17 22 22 C 1.50488 * 110.56008 * 309.12297 * 21 20 19 23 23 C 1.39188 * 117.97811 * 197.59441 * 22 21 20 24 24 C 1.38406 * 118.86358 * 180.24137 * 23 22 21 25 25 C 1.38241 * 118.84907 * 0.04356 * 24 23 22 26 26 N 1.31509 * 120.60535 * 359.87324 * 25 24 23 27 27 C 1.32699 * 122.40254 * 359.93133 * 26 25 24 28 28 C 1.47387 * 88.29615 * 25.92340 * 14 13 12 29 29 C 1.47757 * 125.58114 * 180.02562 * 9 7 2 30 30 H 0.97000 * 120.00192 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.86348 * 59.68906 * 10 9 7 32 32 H 1.09005 * 109.97539 * 298.65147 * 10 9 7 33 33 H 1.09003 * 110.76475 * 221.08688 * 11 10 9 34 34 H 1.08993 * 110.76950 * 97.69215 * 11 10 9 35 35 H 1.09001 * 113.53963 * 338.27213 * 13 12 11 36 36 H 1.08994 * 113.54817 * 207.59130 * 13 12 11 37 37 H 1.09002 * 109.68916 * 68.75221 * 19 17 15 38 38 H 1.09000 * 109.63669 * 308.09496 * 19 17 15 39 39 H 1.09002 * 109.68792 * 310.07682 * 20 19 17 40 40 H 1.09002 * 109.68368 * 189.54979 * 20 19 17 41 41 H 1.08997 * 109.25705 * 69.40137 * 21 20 19 42 42 H 1.09003 * 109.25668 * 188.84223 * 21 20 19 43 43 H 1.07994 * 120.56271 * 0.25737 * 23 22 21 44 44 H 1.08001 * 120.57657 * 180.02562 * 24 23 22 45 45 H 1.07996 * 119.69308 * 179.89377 * 25 24 23 46 46 H 1.09001 * 113.54643 * 88.74027 * 28 14 13 47 47 H 1.08998 * 113.54691 * 219.41934 * 28 14 13 48 48 H 1.08991 * 110.40479 * 83.44932 * 29 9 7 49 49 H 1.09002 * 110.39949 * 321.02632 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1389 -2.5312 0.0007 11 6 -0.4550 -4.0446 -0.0215 12 6 0.8471 -4.6536 -0.5600 13 6 1.0380 -6.1478 -0.3734 14 7 0.4462 -6.3257 -1.7114 15 6 -0.2201 -7.3070 -2.3516 16 8 -0.4490 -8.3543 -1.7846 17 6 -0.6797 -7.1031 -3.7722 18 1 -1.3513 -6.2455 -3.8132 19 6 -1.4265 -8.3502 -4.2434 20 6 -1.6991 -8.2122 -5.7458 21 6 -0.3702 -8.3317 -6.4898 22 6 0.6521 -7.3988 -5.8989 23 6 1.7782 -7.0975 -6.6596 24 6 2.7326 -6.2454 -6.1318 25 6 2.5348 -5.7239 -4.8669 26 7 1.4574 -6.0297 -4.1776 27 6 0.5175 -6.8392 -4.6490 28 6 0.9058 -4.9662 -2.0472 29 6 1.9364 -3.7335 0.0016 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5579 -2.0522 -0.8842 32 1 -0.5572 -2.0785 0.8998 33 1 -1.2871 -4.2558 -0.6933 34 1 -0.6660 -4.4102 0.9834 35 1 0.4321 -6.5671 0.4299 36 1 2.0838 -6.4494 -0.3162 37 1 -2.3709 -8.4376 -3.7061 38 1 -0.8149 -9.2339 -4.0616 39 1 -2.1480 -7.2401 -5.9498 40 1 -2.3743 -9.0038 -6.0707 41 1 -0.0072 -9.3568 -6.4151 42 1 -0.5220 -8.0804 -7.5396 43 1 1.9047 -7.5212 -7.6448 44 1 3.6167 -5.9926 -6.6982 45 1 3.2716 -5.0590 -4.4411 46 1 1.9147 -4.9368 -2.4588 47 1 0.1896 -4.3988 -2.6415 48 1 2.1989 -4.0308 1.0168 49 1 2.8172 -3.7514 -0.6403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072909071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:31 Heat of formation + Delta-G solvation = 55.124080 kcal Electronic energy + Delta-G solvation = -30709.358990 eV Core-core repulsion = 26830.670100 eV Total energy + Delta-G solvation = -3878.688890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.27283 -41.26597 -39.64377 -37.51564 -37.00776 -34.50749 -33.94965 -31.62770 -31.27738 -30.89939 -29.94817 -27.47010 -27.06403 -25.82621 -25.03707 -24.22414 -23.69084 -22.10950 -20.99818 -20.40301 -19.54801 -18.59903 -18.20314 -17.69287 -17.55239 -16.96313 -16.70643 -16.39776 -16.24574 -15.77593 -15.58578 -15.23446 -15.10264 -14.65867 -14.41740 -14.27201 -14.17125 -13.81758 -13.77415 -13.62316 -13.55300 -13.28891 -13.07072 -12.90331 -12.83646 -12.76049 -12.25008 -12.07700 -11.95901 -11.90921 -11.87261 -11.77171 -11.66446 -11.51822 -11.21789 -10.84216 -10.66513 -10.56143 -10.15239 -9.69565 -9.56258 -8.83370 -7.79361 -5.14108 0.13374 0.35390 1.49426 1.50123 1.56692 1.60369 1.95015 2.53648 2.80697 3.15110 3.28901 3.41068 3.48785 3.65412 3.70103 3.80910 3.87315 3.89106 4.08129 4.11176 4.18062 4.21512 4.26628 4.33013 4.40317 4.50986 4.55652 4.62592 4.65198 4.68546 4.82329 4.82759 4.87321 4.88674 4.93244 4.98151 4.99956 5.07718 5.13431 5.18048 5.23593 5.25852 5.29966 5.37420 5.39487 5.52199 5.69471 5.80368 5.81709 6.23806 6.80500 7.01342 7.14857 7.15774 7.82722 8.48093 9.31479 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.003211 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.620421 B = 8717.138871 C = 9638.637025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.297 1.297 7 C -0.233 4.233 8 H 0.087 0.913 9 N -0.624 5.624 10 C 0.193 3.807 11 C -0.102 4.102 12 C -0.112 4.112 13 C 0.125 3.875 14 N -0.623 5.623 15 C 0.547 3.453 16 O -0.590 6.590 17 C -0.047 4.047 18 H 0.109 0.891 19 C -0.095 4.095 20 C -0.115 4.115 21 C -0.076 4.076 22 C -0.124 4.124 23 C -0.079 4.079 24 C -0.165 4.165 25 C 0.083 3.917 26 N -0.504 5.504 27 C 0.108 3.892 28 C 0.178 3.822 29 C 0.155 3.845 30 H 0.244 0.756 31 H 0.010 0.990 32 H 0.004 0.996 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.167 0.833 46 H 0.103 0.897 47 H 0.054 0.946 48 H 0.032 0.968 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 -17.923 -16.725 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.224 1.224 7 C -0.362 4.362 8 H 0.105 0.895 9 N -0.350 5.350 10 C 0.068 3.932 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.002 3.998 14 N -0.355 5.355 15 C 0.337 3.663 16 O -0.472 6.472 17 C -0.068 4.068 18 H 0.127 0.873 19 C -0.134 4.134 20 C -0.152 4.152 21 C -0.113 4.113 22 C -0.126 4.126 23 C -0.105 4.105 24 C -0.184 4.184 25 C -0.076 4.076 26 N -0.213 5.213 27 C -0.026 4.026 28 C 0.056 3.944 29 C 0.030 3.970 30 H 0.053 0.947 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.183 0.817 44 H 0.181 0.819 45 H 0.184 0.816 46 H 0.121 0.879 47 H 0.072 0.928 48 H 0.049 0.951 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.610 -18.076 -15.719 24.009 hybrid contribution 0.345 1.139 -0.253 1.217 sum 1.956 -16.937 -15.972 23.363 Atomic orbital electron populations 1.70201 1.06346 1.24940 1.58813 1.25616 0.96517 1.00925 1.03036 0.85042 0.78375 0.79684 0.76443 1.18699 1.22146 1.22394 1.19516 0.91102 0.83496 1.42096 0.89542 1.44824 1.02126 1.01098 1.86985 1.20866 0.84032 0.90784 0.97508 1.22236 0.95701 0.95555 1.00482 1.22229 0.97246 0.93870 0.98085 1.22704 0.99307 0.92576 0.85213 1.49699 1.53178 1.16633 1.15995 1.20233 0.77178 0.81146 0.87752 1.90637 1.60006 1.27397 1.69151 1.20146 0.95150 1.02326 0.89220 0.87304 1.21411 0.99893 0.94622 0.97426 1.21601 0.97398 1.03667 0.92546 1.20534 0.92396 0.98047 1.00369 1.20725 0.98315 0.99397 0.94122 1.21978 0.91975 0.95753 1.00749 1.22454 1.01295 0.97922 0.96729 1.23038 0.94312 0.97728 0.92523 1.67749 1.02912 1.13573 1.37031 1.20641 0.94301 0.94872 0.92831 1.22530 1.00685 0.78348 0.92882 1.21247 0.94244 0.83716 0.97788 0.94657 0.97161 0.97727 0.91582 0.91027 0.90665 0.88334 0.90549 0.91864 0.91188 0.88426 0.89387 0.88017 0.81655 0.81927 0.81554 0.87874 0.92794 0.95052 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.60 10.30 21.65 0.22 -57.38 16 2 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 3 Si 0.98 45.50 29.55 68.60 2.03 47.52 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 7 C -0.23 -12.81 10.28 84.03 0.86 -11.94 16 8 H 0.09 4.49 7.83 -2.91 -0.02 4.46 16 9 N -0.62 -31.48 3.41 -693.45 -2.36 -33.84 16 10 C 0.19 9.65 5.39 86.81 0.47 10.12 16 11 C -0.10 -3.89 6.40 31.32 0.20 -3.68 16 12 C -0.11 -3.82 1.06 -52.62 -0.06 -3.88 16 13 C 0.12 3.74 8.02 83.67 0.67 4.42 16 14 N -0.62 -19.76 3.39 -859.91 -2.91 -22.67 16 15 C 0.55 17.86 7.29 87.65 0.64 18.50 16 16 O -0.59 -22.65 16.59 -3.03 -0.05 -22.70 16 17 C -0.05 -1.20 2.60 -12.34 -0.03 -1.24 16 18 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 19 C -0.10 -1.97 4.66 30.64 0.14 -1.83 16 20 C -0.11 -1.54 5.98 30.63 0.18 -1.35 16 21 C -0.08 -0.92 5.69 29.71 0.17 -0.76 16 22 C -0.12 -2.24 5.74 -19.85 -0.11 -2.36 16 23 C -0.08 -1.13 9.75 22.54 0.22 -0.91 16 24 C -0.16 -2.51 10.12 22.31 0.23 -2.29 16 25 C 0.08 1.73 10.82 84.74 0.92 2.64 16 26 N -0.50 -13.07 5.18 -184.01 -0.95 -14.02 16 27 C 0.11 2.64 6.19 42.29 0.26 2.90 16 28 C 0.18 5.68 5.28 83.77 0.44 6.12 16 29 C 0.16 6.05 6.70 86.23 0.58 6.62 16 30 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.01 0.57 7.39 -2.39 -0.02 0.55 16 32 H 0.00 0.26 7.49 -2.38 -0.02 0.24 16 33 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 34 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.07 2.26 8.13 -2.39 -0.02 2.24 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.48 7.77 -2.39 -0.02 1.46 16 39 H 0.07 0.94 8.10 -2.39 -0.02 0.92 16 40 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.10 0.78 8.13 -2.39 -0.02 0.76 16 43 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 44 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 45 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 46 H 0.10 3.14 6.37 -2.39 -0.02 3.13 16 47 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 48 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.05 1.97 8.00 -2.39 -0.02 1.95 16 Total: -1.00 -73.89 382.10 3.15 -70.73 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.94 Total: 14.67 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 6.25 Total: 17.68 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -6.01 Total: -127.91 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.05 Total: -22.70 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -73.89 3.15 -70.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072909071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.857 kcal (2) G-P(sol) polarization free energy of solvation -73.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds