Wall clock time and date at job start Wed Apr 1 2020 00:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 120.00027 * 2 1 4 4 H 1.48500 * 109.46894 * 274.98894 * 3 2 1 5 5 H 1.48496 * 109.46982 * 34.98646 * 3 2 1 6 6 H 1.48500 * 109.47094 * 154.98468 * 3 2 1 7 7 C 1.38807 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00170 * 173.43574 * 7 2 1 9 9 N 1.36934 * 120.00135 * 353.43559 * 7 2 1 10 10 C 1.46646 * 125.29184 * 186.43620 * 9 7 2 11 11 C 1.53517 * 107.05366 * 197.36113 * 10 9 7 12 12 H 1.09003 * 112.80906 * 211.54575 * 11 10 9 13 13 C 1.54781 * 109.69094 * 84.08649 * 11 10 9 14 14 C 1.55159 * 101.36043 * 212.75968 * 13 11 10 15 15 N 1.47350 * 104.79521 * 37.54174 * 14 13 11 16 16 C 1.34775 * 125.52284 * 156.69094 * 15 14 13 17 17 O 1.21281 * 119.99566 * 184.80925 * 16 15 14 18 18 C 1.50702 * 120.00240 * 4.80443 * 16 15 14 19 19 H 1.08999 * 109.25188 * 23.63677 * 18 16 15 20 20 C 1.52723 * 109.25778 * 264.15708 * 18 16 15 21 21 C 1.53328 * 108.42508 * 188.45840 * 20 18 16 22 22 C 1.52770 * 108.35519 * 69.89033 * 21 20 18 23 23 C 1.50494 * 110.56354 * 309.22101 * 22 21 20 24 24 C 1.39189 * 117.97305 * 197.28444 * 23 22 21 25 25 C 1.38409 * 118.86974 * 180.21194 * 24 23 22 26 26 C 1.38237 * 118.84316 * 0.06660 * 25 24 23 27 27 N 1.31515 * 120.60939 * 359.83257 * 26 25 24 28 28 C 1.32696 * 122.39846 * 0.03203 * 27 26 25 29 29 C 1.47262 * 108.95039 * 336.42082 * 15 14 13 30 30 H 1.08999 * 111.94451 * 235.83148 * 29 15 14 31 31 C 1.46493 * 125.28729 * 6.41701 * 9 7 2 32 32 H 0.97005 * 119.99758 * 0.02562 * 1 2 3 33 33 H 1.09005 * 109.91801 * 316.71091 * 10 9 7 34 34 H 1.08998 * 109.91876 * 77.81358 * 10 9 7 35 35 H 1.08999 * 111.02987 * 330.96832 * 13 11 10 36 36 H 1.09000 * 111.03239 * 94.84079 * 13 11 10 37 37 H 1.09002 * 110.48064 * 278.68182 * 14 13 11 38 38 H 1.08995 * 110.33103 * 156.32435 * 14 13 11 39 39 H 1.08992 * 109.67434 * 308.19509 * 20 18 16 40 40 H 1.09007 * 109.67477 * 68.72738 * 20 18 16 41 41 H 1.08997 * 109.69102 * 189.61363 * 21 20 18 42 42 H 1.08999 * 109.68668 * 310.14405 * 21 20 18 43 43 H 1.09000 * 109.25427 * 69.49504 * 22 21 20 44 44 H 1.08994 * 109.26065 * 188.93668 * 22 21 20 45 45 H 1.08002 * 120.56451 * 0.20606 * 24 23 22 46 46 H 1.07999 * 120.57325 * 180.02562 * 25 24 23 47 47 H 1.07997 * 119.69784 * 179.84949 * 26 25 24 48 48 H 1.08995 * 109.71768 * 58.33354 * 31 9 7 49 49 H 1.08998 * 109.71409 * 297.78923 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4121 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0849 -1.2052 -0.1064 9 7 1.3324 -2.3841 0.1366 10 6 1.9529 -3.7043 0.2864 11 6 0.8735 -4.7480 -0.0334 12 1 0.9988 -5.6721 0.5310 13 6 0.7977 -4.9677 -1.5637 14 6 -0.7120 -5.2711 -1.7544 15 7 -1.3981 -4.3791 -0.8033 16 6 -2.6759 -3.9621 -0.9029 17 8 -3.1147 -3.1573 -0.1088 18 6 -3.5593 -4.4960 -2.0010 19 1 -3.1769 -5.4613 -2.3326 20 6 -3.5489 -3.5196 -3.1753 21 6 -4.6097 -3.9678 -4.1876 22 6 -5.9894 -3.7229 -3.5788 23 6 -6.0719 -4.3192 -2.1995 24 6 -7.3346 -4.5167 -1.6482 25 6 -7.4321 -5.0599 -0.3789 26 6 -6.2716 -5.3860 0.2978 27 7 -5.0953 -5.1870 -0.2556 28 6 -4.9592 -4.6714 -1.4707 29 6 -0.4634 -4.0222 0.2773 30 1 -0.8627 -4.2719 1.2603 31 6 -0.1255 -2.5261 0.1556 32 1 -0.4850 0.8401 -0.0004 33 1 2.7848 -3.8048 -0.4107 34 1 2.3077 -3.8340 1.3088 35 1 1.0902 -4.0669 -2.1032 36 1 1.4078 -5.8184 -1.8675 37 1 -0.9244 -6.3136 -1.5173 38 1 -1.0179 -5.0437 -2.7756 39 1 -3.7815 -2.5158 -2.8200 40 1 -2.5663 -3.5238 -3.6474 41 1 -4.5065 -3.3917 -5.1071 42 1 -4.4862 -5.0290 -4.4034 43 1 -6.1700 -2.6497 -3.5179 44 1 -6.7487 -4.1791 -4.2138 45 1 -8.2232 -4.2507 -2.2014 46 1 -8.3979 -5.2254 0.0752 47 1 -6.3315 -5.8083 1.2900 48 1 -0.5459 -2.1281 -0.7679 49 1 -0.5365 -1.9859 1.0085 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076160102.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:36 Heat of formation + Delta-G solvation = 31.091721 kcal Electronic energy + Delta-G solvation = -30978.048740 eV Core-core repulsion = 27098.317728 eV Total energy + Delta-G solvation = -3879.731012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.96242 -39.74617 -37.78429 -36.33667 -34.78636 -33.30619 -32.14058 -30.59911 -30.50659 -30.08869 -28.45574 -26.67263 -24.77826 -24.34197 -23.35807 -23.20243 -22.22114 -20.54124 -20.00561 -19.40876 -18.48829 -17.10461 -16.68917 -16.60125 -16.50847 -15.64976 -15.24706 -14.92392 -14.52262 -14.30580 -14.10692 -13.94530 -13.65274 -13.50462 -13.34377 -13.05504 -12.85814 -12.61673 -12.52222 -12.46292 -12.05649 -11.88427 -11.65395 -11.45965 -11.29033 -11.05964 -11.01256 -10.91628 -10.71917 -10.66288 -10.45041 -10.13159 -9.93574 -9.78876 -9.71936 -9.65116 -9.41738 -9.13076 -8.75369 -8.47748 -8.01034 -6.72110 -5.60927 -2.96711 1.07711 1.25919 3.19559 3.38814 3.44598 3.49974 3.52757 3.80077 4.14603 4.49791 4.56559 4.61116 4.67278 4.81015 4.87340 4.92569 4.97019 5.01264 5.09225 5.22831 5.27799 5.35293 5.43544 5.53363 5.56490 5.60254 5.63163 5.64386 5.68175 5.73890 5.80957 5.83385 5.89415 5.98278 6.01932 6.11633 6.14467 6.20641 6.23438 6.30820 6.47360 6.65763 6.68005 6.68902 6.78174 6.94976 7.70061 7.73239 8.00594 8.05079 8.14271 8.38511 8.79124 9.31176 9.92438 10.56423 11.48426 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013744 B = 0.003445 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.714577 B = 8124.796819 C = 8734.829362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.004 4.004 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.145 3.855 11 C -0.111 4.111 12 H 0.087 0.913 13 C -0.119 4.119 14 C 0.101 3.899 15 N -0.608 5.608 16 C 0.546 3.454 17 O -0.516 6.516 18 C -0.050 4.050 19 H 0.101 0.899 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.078 4.078 23 C -0.122 4.122 24 C -0.080 4.080 25 C -0.177 4.177 26 C 0.103 3.897 27 N -0.470 5.470 28 C 0.157 3.843 29 C 0.117 3.883 30 H 0.078 0.922 31 C 0.181 3.819 32 H 0.252 0.748 33 H 0.037 0.963 34 H 0.016 0.984 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.153 0.847 48 H 0.051 0.949 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.237 -15.257 -8.604 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.201 4.201 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.019 3.981 11 C -0.130 4.130 12 H 0.105 0.895 13 C -0.157 4.157 14 C -0.022 4.022 15 N -0.343 5.343 16 C 0.333 3.667 17 O -0.390 6.390 18 C -0.073 4.073 19 H 0.119 0.881 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.115 4.115 23 C -0.124 4.124 24 C -0.107 4.107 25 C -0.197 4.197 26 C -0.056 4.056 27 N -0.178 5.178 28 C 0.021 3.979 29 C 0.013 3.987 30 H 0.096 0.904 31 C 0.056 3.944 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.034 0.966 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.171 0.829 48 H 0.069 0.931 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.877 -14.770 -7.709 20.461 hybrid contribution -0.454 1.058 -0.273 1.183 sum -12.331 -13.712 -7.983 20.095 Atomic orbital electron populations 1.70040 1.04755 1.24975 1.55899 1.24862 0.95623 0.97626 1.02010 0.86185 0.78734 0.83967 0.77384 1.21762 1.21674 1.20632 1.18982 0.90934 0.82459 1.43942 0.90473 1.44151 1.01522 1.01148 1.86139 1.21054 0.93778 0.85662 0.97646 1.22940 0.95673 0.98496 0.95933 0.89457 1.22763 0.94151 1.02471 0.96307 1.22323 0.93192 0.93543 0.93134 1.48516 1.10843 1.48973 1.25988 1.19507 0.80435 0.81337 0.85445 1.90738 1.73038 1.32402 1.42788 1.20094 0.90712 1.01090 0.95357 0.88100 1.21546 1.00300 0.99246 0.93857 1.21563 0.93746 1.01872 0.98245 1.20447 0.98299 1.01113 0.91666 1.20395 0.93221 1.00752 0.98074 1.21514 0.97004 0.96762 0.95372 1.22084 1.00183 1.01481 0.95953 1.22631 0.87355 0.96128 0.99517 1.67502 1.27964 1.11876 1.10418 1.20379 0.93585 0.94205 0.89700 1.22834 0.87269 0.98994 0.89576 0.90414 1.21242 0.83921 0.87471 1.01791 0.93742 0.94525 0.96614 0.89555 0.90644 0.92020 0.91321 0.90162 0.90098 0.90515 0.91373 0.90079 0.90544 0.85007 0.84944 0.82928 0.93133 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.29 10.28 55.49 0.57 -27.72 16 2 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16 3 Si 0.91 22.73 29.56 -169.99 -5.02 17.70 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.70 10.23 -15.06 -0.15 -6.86 16 8 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 9 N -0.60 -15.81 3.37 -172.29 -0.58 -16.39 16 10 C 0.15 3.00 6.50 -3.69 -0.02 2.98 16 11 C -0.11 -1.90 3.97 -88.21 -0.35 -2.25 16 12 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.12 -1.74 6.33 -24.65 -0.16 -1.90 16 14 C 0.10 1.40 6.13 -2.43 -0.01 1.39 16 15 N -0.61 -11.20 2.83 -161.67 -0.46 -11.66 16 16 C 0.55 10.68 6.08 -10.99 -0.07 10.61 16 17 O -0.52 -12.61 16.16 5.56 0.09 -12.52 16 18 C -0.05 -0.75 2.15 -93.05 -0.20 -0.95 16 19 H 0.10 1.27 7.05 -51.93 -0.37 0.90 16 20 C -0.11 -1.43 5.23 -26.70 -0.14 -1.57 16 21 C -0.12 -1.08 5.98 -26.68 -0.16 -1.24 16 22 C -0.08 -0.74 5.68 -28.10 -0.16 -0.90 16 23 C -0.12 -1.52 5.74 -104.60 -0.60 -2.12 16 24 C -0.08 -0.85 9.75 -39.17 -0.38 -1.24 16 25 C -0.18 -1.88 10.12 -39.52 -0.40 -2.28 16 26 C 0.10 1.35 11.19 -17.69 -0.20 1.15 16 27 N -0.47 -7.69 9.24 -9.51 -0.09 -7.78 16 28 C 0.16 2.39 5.83 -82.44 -0.48 1.91 16 29 C 0.12 2.42 3.84 -65.87 -0.25 2.16 16 30 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 31 C 0.18 4.75 4.52 -3.60 -0.02 4.73 16 32 H 0.25 7.67 8.31 -40.82 -0.34 7.34 16 33 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 1.51 7.93 -51.93 -0.41 1.10 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.82 7.44 -51.93 -0.39 0.43 16 39 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 40 H 0.08 0.98 7.91 -51.93 -0.41 0.57 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 45 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 48 H 0.05 1.49 7.08 -51.93 -0.37 1.12 16 49 H 0.05 1.42 7.34 -51.93 -0.38 1.04 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -36.90 381.85 -11.36 -48.26 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.77 Total: 0.92 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -3.85 Total: 3.42 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.56 Total: -63.54 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.90 -11.36 -48.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076160102.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.353 kcal (2) G-P(sol) polarization free energy of solvation -36.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds