Wall clock time and date at job start Wed Apr 1 2020 00:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99882 * 2 1 4 4 H 1.48496 * 109.46926 * 239.99444 * 3 2 1 5 5 H 1.48496 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47052 * 120.00021 * 3 2 1 7 7 C 1.38806 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00125 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00131 * 0.02562 * 7 2 1 10 10 C 1.46581 * 125.30603 * 179.97438 * 9 7 2 11 11 C 1.53270 * 108.15346 * 177.88888 * 10 9 7 12 12 H 1.09005 * 113.08453 * 222.46026 * 11 10 9 13 13 C 1.54803 * 109.74763 * 95.76465 * 11 10 9 14 14 C 1.54932 * 101.49888 * 212.28885 * 13 11 10 15 15 N 1.47350 * 104.89432 * 37.23120 * 14 13 11 16 16 C 1.34771 * 125.52812 * 156.80563 * 15 14 13 17 17 O 1.21283 * 120.00247 * 354.49111 * 16 15 14 18 18 C 1.50704 * 120.00061 * 174.49294 * 16 15 14 19 19 H 1.08996 * 109.25336 * 24.58320 * 18 16 15 20 20 C 1.52727 * 109.25646 * 144.06339 * 18 16 15 21 21 C 1.53327 * 108.42201 * 171.55633 * 20 18 16 22 22 C 1.52766 * 108.35146 * 290.10150 * 21 20 18 23 23 C 1.50497 * 110.55853 * 50.80521 * 22 21 20 24 24 C 1.39186 * 117.97161 * 162.70472 * 23 22 21 25 25 C 1.38409 * 118.86981 * 179.79066 * 24 23 22 26 26 C 1.38243 * 118.84128 * 359.97438 * 25 24 23 27 27 N 1.31510 * 120.60914 * 0.12890 * 26 25 24 28 28 C 1.32761 * 122.38793 * 359.91607 * 27 26 25 29 29 C 1.47213 * 108.93879 * 336.54591 * 15 14 13 30 30 H 1.09002 * 112.28483 * 236.23804 * 29 15 14 31 31 C 1.47551 * 125.06345 * 359.53065 * 9 7 2 32 32 H 0.97003 * 119.99849 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.73605 * 58.20554 * 10 9 7 34 34 H 1.08992 * 109.71956 * 297.56052 * 10 9 7 35 35 H 1.09000 * 111.01734 * 330.34515 * 13 11 10 36 36 H 1.09003 * 111.02053 * 94.23621 * 13 11 10 37 37 H 1.09006 * 110.35558 * 278.38082 * 14 13 11 38 38 H 1.09002 * 110.35664 * 156.08873 * 14 13 11 39 39 H 1.08998 * 109.67180 * 291.28901 * 20 18 16 40 40 H 1.08999 * 109.67390 * 51.82435 * 20 18 16 41 41 H 1.08998 * 109.68899 * 49.81929 * 21 20 18 42 42 H 1.09008 * 109.68642 * 170.38983 * 21 20 18 43 43 H 1.09003 * 109.26253 * 171.08666 * 22 21 20 44 44 H 1.09005 * 109.26026 * 290.52639 * 22 21 20 45 45 H 1.08001 * 120.57299 * 359.77316 * 24 23 22 46 46 H 1.08002 * 120.58362 * 179.97438 * 25 24 23 47 47 H 1.07996 * 119.69707 * 180.10256 * 26 25 24 48 48 H 1.08996 * 109.81605 * 78.49294 * 31 9 7 49 49 H 1.08997 * 110.47676 * 316.89853 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9380 -3.7198 0.0005 11 6 0.8152 -4.7617 0.0542 12 1 1.0277 -5.5843 0.7371 13 6 0.4830 -5.2469 -1.3778 14 6 -1.0347 -5.5359 -1.2617 15 7 -1.5557 -4.4761 -0.3805 16 6 -2.8337 -4.0503 -0.3388 17 8 -3.6417 -4.4779 -1.1358 18 6 -3.2587 -3.0428 0.6983 19 1 -2.3907 -2.4645 1.0146 20 6 -4.2968 -2.1017 0.0905 21 6 -4.8705 -1.2251 1.2100 22 6 -5.7278 -2.1048 2.1182 23 6 -4.9643 -3.3312 2.5400 24 6 -5.4338 -4.0472 3.6374 25 6 -4.7483 -5.1806 4.0387 26 6 -3.6213 -5.5625 3.3352 27 7 -3.2056 -4.8600 2.3040 28 6 -3.8342 -3.7670 1.8883 29 6 -0.4551 -3.9623 0.4512 30 1 -0.6746 -4.0324 1.5166 31 6 -0.1441 -2.5184 0.0099 32 1 -0.4850 0.8401 -0.0004 33 1 2.5829 -3.8284 0.8725 34 1 2.5229 -3.8556 -0.9090 35 1 0.6770 -4.4638 -2.1108 36 1 1.0362 -6.1540 -1.6215 37 1 -1.2009 -6.5162 -0.8149 38 1 -1.5074 -5.4802 -2.2423 39 1 -3.8242 -1.4718 -0.6632 40 1 -5.0970 -2.6839 -0.3664 41 1 -4.0562 -0.7859 1.7863 42 1 -5.4843 -0.4341 0.7790 43 1 -6.0134 -1.5368 3.0036 44 1 -6.6266 -2.4079 1.5810 45 1 -6.3178 -3.7238 4.1669 46 1 -5.0880 -5.7568 4.8867 47 1 -3.0768 -6.4455 3.6353 48 1 -0.5370 -2.3433 -0.9916 49 1 -0.5851 -1.8121 0.7133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076160103.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:41 Heat of formation + Delta-G solvation = 27.175744 kcal Electronic energy + Delta-G solvation = -31561.211439 eV Core-core repulsion = 27681.310618 eV Total energy + Delta-G solvation = -3879.900821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.91745 -39.71589 -37.91525 -36.19356 -34.68022 -33.35893 -32.15453 -30.99010 -30.41768 -29.61702 -28.49626 -26.71210 -24.67101 -24.47638 -23.35113 -23.17896 -21.84225 -20.56108 -19.73872 -19.70011 -18.43713 -17.13393 -16.80792 -16.46223 -16.36713 -15.77681 -15.30214 -14.74918 -14.53359 -14.30226 -13.93910 -13.77464 -13.67818 -13.56810 -13.31994 -12.93151 -12.91603 -12.50291 -12.45663 -12.25917 -12.10835 -11.90089 -11.65345 -11.49878 -11.13991 -11.09911 -11.01210 -10.81418 -10.68477 -10.43435 -10.41959 -10.18281 -10.01609 -9.82517 -9.72814 -9.70672 -9.48252 -9.18197 -8.67340 -8.61634 -8.04033 -6.86349 -5.70593 -3.09028 1.12894 1.28781 3.11150 3.39193 3.43409 3.44527 3.46301 3.83816 4.26079 4.47189 4.64571 4.72455 4.78783 4.90263 4.95544 4.97674 5.09290 5.18505 5.23486 5.30843 5.42067 5.47904 5.53733 5.60910 5.62455 5.70026 5.73896 5.82885 5.84021 5.85535 5.96129 5.98985 6.04227 6.08121 6.15299 6.18818 6.21952 6.30742 6.37361 6.42724 6.52258 6.57209 6.67641 6.72704 6.77218 6.92609 7.42761 7.57597 7.75655 8.05853 8.09601 8.26897 8.67719 9.18731 9.79896 10.42688 11.36154 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.004560 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.747351 B = 6138.810492 C = 7403.137421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.146 3.854 11 C -0.106 4.106 12 H 0.087 0.913 13 C -0.123 4.123 14 C 0.110 3.890 15 N -0.593 5.593 16 C 0.560 3.440 17 O -0.560 6.560 18 C -0.059 4.059 19 H 0.123 0.877 20 C -0.103 4.103 21 C -0.120 4.120 22 C -0.077 4.077 23 C -0.119 4.119 24 C -0.079 4.079 25 C -0.179 4.179 26 C 0.102 3.898 27 N -0.478 5.478 28 C 0.155 3.845 29 C 0.106 3.894 30 H 0.088 0.912 31 C 0.160 3.840 32 H 0.253 0.747 33 H 0.024 0.976 34 H 0.027 0.973 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.153 0.847 48 H 0.025 0.975 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.609 -9.205 6.442 14.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.020 3.980 11 C -0.126 4.126 12 H 0.106 0.894 13 C -0.161 4.161 14 C -0.013 4.013 15 N -0.324 5.324 16 C 0.348 3.652 17 O -0.439 6.439 18 C -0.080 4.080 19 H 0.141 0.859 20 C -0.141 4.141 21 C -0.157 4.157 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.105 4.105 25 C -0.199 4.199 26 C -0.058 4.058 27 N -0.186 5.186 28 C 0.019 3.981 29 C 0.002 3.998 30 H 0.105 0.895 31 C 0.035 3.965 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.170 0.830 48 H 0.043 0.957 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.405 -9.445 5.557 14.441 hybrid contribution -0.149 0.954 0.653 1.165 sum -9.554 -8.492 6.209 14.211 Atomic orbital electron populations 1.69853 1.04835 1.25013 1.57323 1.24760 0.95735 0.97631 1.02179 0.86177 0.78453 0.83120 0.77876 1.21240 1.21576 1.21190 1.19024 0.90489 0.82339 1.43573 0.90416 1.44333 1.01320 0.99992 1.87182 1.20979 0.93441 0.85342 0.98234 1.22811 0.95569 0.97814 0.96392 0.89425 1.22810 0.94315 1.01585 0.97379 1.22131 0.93901 0.90527 0.94695 1.48323 1.07818 1.37412 1.38864 1.19578 0.80413 0.81299 0.83875 1.90617 1.51623 1.59576 1.42110 1.20221 1.01049 0.95419 0.91342 0.85923 1.21449 0.97824 0.96883 0.97966 1.21576 0.99786 0.97569 0.96795 1.20461 0.97959 0.92975 1.00036 1.20419 0.96510 0.98621 0.96540 1.21537 0.99156 0.94406 0.95419 1.22066 0.97744 0.98295 1.01820 1.22627 0.93983 0.98232 0.90947 1.67591 1.31456 1.05831 1.13752 1.20566 0.91235 0.91576 0.94680 1.23080 0.84636 0.97369 0.94754 0.89455 1.22000 0.84886 0.89554 1.00063 0.93659 0.95837 0.95546 0.90081 0.90520 0.92123 0.91025 0.89934 0.90527 0.90776 0.90691 0.90579 0.90375 0.85003 0.85016 0.82965 0.95709 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.79 10.16 55.49 0.56 -25.23 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.12 10.25 -15.06 -0.15 -6.28 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.92 3.40 -171.45 -0.58 -15.50 16 10 C 0.15 2.94 6.66 -3.86 -0.03 2.91 16 11 C -0.11 -1.81 3.91 -88.34 -0.35 -2.16 16 12 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 13 C -0.12 -1.90 6.25 -24.76 -0.15 -2.05 16 14 C 0.11 1.81 6.91 -2.56 -0.02 1.80 16 15 N -0.59 -11.16 2.85 -161.67 -0.46 -11.62 16 16 C 0.56 11.11 6.07 -10.99 -0.07 11.04 16 17 O -0.56 -12.34 16.34 5.55 0.09 -12.25 16 18 C -0.06 -1.04 2.35 -93.05 -0.22 -1.26 16 19 H 0.12 2.40 5.27 -51.93 -0.27 2.12 16 20 C -0.10 -1.62 5.06 -26.70 -0.14 -1.76 16 21 C -0.12 -1.52 5.98 -26.68 -0.16 -1.68 16 22 C -0.08 -0.86 5.68 -28.10 -0.16 -1.02 16 23 C -0.12 -1.61 5.74 -104.62 -0.60 -2.21 16 24 C -0.08 -0.88 9.75 -39.17 -0.38 -1.27 16 25 C -0.18 -1.93 10.12 -39.52 -0.40 -2.33 16 26 C 0.10 1.31 11.19 -17.69 -0.20 1.11 16 27 N -0.48 -7.77 9.53 -9.51 -0.09 -7.86 16 28 C 0.15 2.52 6.19 -82.43 -0.51 2.01 16 29 C 0.11 2.04 3.28 -65.74 -0.22 1.82 16 30 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 31 C 0.16 3.78 4.24 -2.86 -0.01 3.76 16 32 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.03 0.53 7.74 -51.93 -0.40 0.12 16 35 H 0.08 1.42 7.88 -51.93 -0.41 1.01 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.23 7.51 -51.93 -0.39 0.84 16 41 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 43 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 47 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 48 H 0.02 0.66 7.94 -51.93 -0.41 0.25 16 49 H 0.09 2.36 5.17 -51.93 -0.27 2.09 16 LS Contribution 379.47 15.07 5.72 5.72 Total: -1.00 -32.28 379.47 -11.25 -43.53 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.61 Total: 4.46 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -3.85 Total: 2.16 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.57 Total: -60.21 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.28 -11.25 -43.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076160103.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.701 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds