Wall clock time and date at job start Wed Apr 1 2020 00:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99673 * 2 1 4 4 H 1.48500 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47162 * 299.99700 * 3 2 1 6 6 H 1.48494 * 109.47322 * 60.00083 * 3 2 1 7 7 C 1.38806 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00460 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.46584 * 125.30907 * 180.02562 * 9 7 2 11 11 C 1.53264 * 108.16205 * 177.90873 * 10 9 7 12 12 H 1.08992 * 112.58405 * 222.76293 * 11 10 9 13 13 C 1.55091 * 109.73658 * 95.78487 * 11 10 9 14 14 C 1.54933 * 101.36890 * 212.30196 * 13 11 10 15 15 N 1.47347 * 104.99085 * 37.23294 * 14 13 11 16 16 C 1.34779 * 125.53419 * 156.50505 * 15 14 13 17 17 O 1.21277 * 120.00013 * 179.97438 * 16 15 14 18 18 C 1.50696 * 119.99623 * 359.97438 * 16 15 14 19 19 N 1.46904 * 109.47262 * 174.21797 * 18 16 15 20 20 C 1.47916 * 110.99899 * 284.24256 * 19 18 16 21 21 C 1.54599 * 102.62147 * 265.48529 * 20 19 18 22 22 C 1.51576 * 102.83718 * 334.46564 * 21 20 19 23 23 C 1.37919 * 131.56047 * 196.34877 * 22 21 20 24 24 C 1.38305 * 120.07937 * 179.28372 * 23 22 21 25 25 C 1.38308 * 119.88267 * 359.97438 * 24 23 22 26 26 C 1.37912 * 120.26321 * 0.12290 * 25 24 23 27 27 C 1.38958 * 107.95282 * 15.93569 * 22 21 20 28 28 C 1.47209 * 108.93999 * 336.48660 * 15 14 13 29 29 H 1.08999 * 112.29273 * 236.24684 * 28 15 14 30 30 C 1.46607 * 125.30700 * 0.02562 * 9 7 2 31 31 H 0.97005 * 120.00171 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.73661 * 58.21775 * 10 9 7 33 33 H 1.09004 * 109.73444 * 297.59226 * 10 9 7 34 34 H 1.09006 * 111.12613 * 94.27448 * 13 11 10 35 35 H 1.08990 * 111.02913 * 330.29428 * 13 11 10 36 36 H 1.08997 * 110.36076 * 278.32101 * 14 13 11 37 37 H 1.09009 * 110.35312 * 156.13817 * 14 13 11 38 38 H 1.08999 * 109.47912 * 294.21802 * 18 16 15 39 39 H 1.09001 * 109.47173 * 54.21785 * 18 16 15 40 40 H 1.09007 * 110.77774 * 23.76402 * 20 19 18 41 41 H 1.08998 * 110.78366 * 147.19957 * 20 19 18 42 42 H 1.09000 * 110.73828 * 216.13085 * 21 20 19 43 43 H 1.08998 * 110.89761 * 92.87464 * 21 20 19 44 44 H 1.08001 * 119.96442 * 359.28361 * 23 22 21 45 45 H 1.07998 * 120.06083 * 180.02562 * 24 23 22 46 46 H 1.07999 * 119.86826 * 180.14439 * 25 24 23 47 47 H 1.07998 * 119.89979 * 180.02562 * 26 25 24 48 48 H 1.08996 * 109.91720 * 78.43009 * 30 9 7 49 49 H 1.09009 * 109.91325 * 317.14732 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.9380 -3.7198 0.0016 11 6 0.8153 -4.7618 0.0543 12 1 1.0332 -5.5773 0.7438 13 6 0.4846 -5.2485 -1.3806 14 6 -1.0332 -5.5364 -1.2633 15 7 -1.5553 -4.4764 -0.3830 16 6 -2.8324 -4.0473 -0.3460 17 8 -3.1536 -3.1648 0.4214 18 6 -3.8612 -4.6640 -1.2582 19 7 -5.1893 -4.1278 -0.9319 20 6 -5.7158 -4.7352 0.3098 21 6 -6.5754 -5.9041 -0.2241 22 6 -6.9492 -5.4383 -1.6172 23 6 -7.9225 -5.8675 -2.4950 24 6 -8.0670 -5.2518 -3.7250 25 6 -7.2338 -4.2042 -4.0733 26 6 -6.2576 -3.7726 -3.1999 27 6 -6.1032 -4.3906 -1.9599 28 6 -0.4556 -3.9623 0.4498 29 1 -0.6762 -4.0321 1.5149 30 6 -0.1342 -2.5237 -0.0005 31 1 -0.4851 0.8401 -0.0004 32 1 2.5820 -3.8281 0.8743 33 1 2.5242 -3.8561 -0.9072 34 1 1.0370 -6.1561 -1.6247 35 1 0.6787 -4.4656 -2.1136 36 1 -1.1999 -6.5165 -0.8166 37 1 -1.5063 -5.4821 -2.2439 38 1 -3.6178 -4.4263 -2.2938 39 1 -3.8633 -5.7458 -1.1246 40 1 -4.9026 -5.1067 0.9335 41 1 -6.3308 -4.0221 0.8586 42 1 -7.4660 -6.0398 0.3895 43 1 -5.9946 -6.8254 -0.2680 44 1 -8.5727 -6.6854 -2.2217 45 1 -8.8295 -5.5878 -4.4120 46 1 -7.3483 -3.7220 -5.0329 47 1 -5.6105 -2.9538 -3.4777 48 1 -0.5221 -2.3538 -1.0048 49 1 -0.5739 -1.8096 0.6959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076583884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:40 Heat of formation + Delta-G solvation = 57.610955 kcal Electronic energy + Delta-G solvation = -30229.834640 eV Core-core repulsion = 26351.253589 eV Total energy + Delta-G solvation = -3878.581051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.05576 -39.88974 -37.89651 -36.55689 -34.89981 -32.61072 -32.19394 -30.64018 -30.25647 -29.07320 -28.68368 -27.19800 -26.03522 -24.41681 -23.19966 -22.62372 -21.39943 -21.29735 -20.35844 -19.55409 -18.56780 -17.16088 -16.91759 -16.62501 -16.25833 -15.65503 -15.40737 -15.20088 -14.97051 -14.57468 -14.24055 -13.85270 -13.75316 -13.56299 -13.30562 -13.19879 -12.77004 -12.69717 -12.53787 -12.43126 -12.14666 -12.03870 -11.82686 -11.69165 -11.50916 -11.33020 -11.18136 -11.02955 -11.00182 -10.77822 -10.42724 -10.14071 -10.00303 -9.85886 -9.72995 -9.66637 -9.15371 -8.96811 -8.55926 -8.14471 -7.98247 -6.77721 -5.58131 -3.00800 1.13291 1.22645 3.04095 3.10658 3.44234 3.48681 3.52298 3.56432 3.68979 4.38276 4.53494 4.58498 4.62923 4.80225 4.81996 4.86805 4.94051 5.02401 5.09259 5.17558 5.23255 5.25958 5.35241 5.45632 5.47914 5.54165 5.56566 5.61498 5.68367 5.69083 5.77535 5.82523 5.94198 5.96173 6.04186 6.20479 6.22883 6.27962 6.34894 6.35717 6.54929 6.57663 6.62507 6.68495 6.78416 6.90915 7.15355 7.59724 7.69096 7.94157 8.03049 8.42517 8.65628 9.28744 9.89717 10.51712 11.45860 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014779 B = 0.002890 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.176878 B = 9687.801535 C =10582.124806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.110 4.110 12 H 0.087 0.913 13 C -0.121 4.121 14 C 0.101 3.899 15 N -0.611 5.611 16 C 0.523 3.477 17 O -0.504 6.504 18 C 0.048 3.952 19 N -0.473 5.473 20 C 0.060 3.940 21 C -0.113 4.113 22 C -0.140 4.140 23 C -0.091 4.091 24 C -0.135 4.135 25 C -0.104 4.104 26 C -0.110 4.110 27 C 0.096 3.904 28 C 0.117 3.883 29 H 0.081 0.919 30 C 0.167 3.833 31 H 0.252 0.748 32 H 0.023 0.977 33 H 0.025 0.975 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.019 0.981 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.915 -18.085 -5.879 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.019 3.981 11 C -0.129 4.129 12 H 0.105 0.895 13 C -0.159 4.159 14 C -0.022 4.022 15 N -0.348 5.348 16 C 0.309 3.691 17 O -0.377 6.377 18 C -0.081 4.081 19 N -0.189 5.189 20 C -0.067 4.067 21 C -0.151 4.151 22 C -0.143 4.143 23 C -0.109 4.109 24 C -0.154 4.154 25 C -0.122 4.122 26 C -0.130 4.130 27 C 0.000 4.000 28 C 0.013 3.987 29 H 0.099 0.901 30 C 0.041 3.959 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.145 0.855 48 H 0.037 0.963 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.102 -16.768 -5.336 21.938 hybrid contribution 0.370 0.047 -0.258 0.453 sum -12.732 -16.720 -5.594 21.748 Atomic orbital electron populations 1.69941 1.04710 1.24841 1.56398 1.24856 0.95704 0.97757 1.02095 0.86047 0.78588 0.83862 0.77257 1.20547 1.21781 1.21715 1.19052 0.90419 0.82270 1.44312 0.90363 1.44184 1.01642 0.99898 1.87166 1.20982 0.93367 0.85626 0.98161 1.22917 0.95936 0.97913 0.96151 0.89515 1.22829 0.93803 1.01674 0.97609 1.22282 0.95307 0.90675 0.93975 1.48557 1.07977 1.38173 1.40059 1.19900 0.81470 0.83312 0.84448 1.90771 1.78942 1.28859 1.39098 1.22038 0.87868 0.97640 1.00506 1.59584 1.00734 1.56745 1.01828 1.23138 0.98295 0.94097 0.91182 1.21752 1.00968 0.99436 0.92915 1.21041 0.99388 0.96771 0.97124 1.20371 0.97249 0.99889 0.93435 1.21038 1.00296 0.97523 0.96555 1.20941 0.95087 0.96966 0.99252 1.20613 0.99744 1.00276 0.92385 1.19580 0.94461 0.93743 0.92236 1.22935 0.83801 0.97768 0.94189 0.90112 1.21644 0.84176 0.90050 1.00025 0.93668 0.95938 0.95752 0.90394 0.89904 0.91919 0.91344 0.87919 0.91575 0.89669 0.88860 0.89517 0.90220 0.86328 0.85886 0.85582 0.85528 0.96273 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.12 10.17 55.49 0.56 -27.56 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 7 C -0.23 -6.61 10.25 -15.06 -0.15 -6.76 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.69 3.37 -172.22 -0.58 -16.27 16 10 C 0.15 2.95 6.66 -3.86 -0.03 2.93 16 11 C -0.11 -1.80 3.91 -88.17 -0.35 -2.15 16 12 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.12 -1.65 6.26 -24.61 -0.15 -1.80 16 14 C 0.10 1.27 6.65 -2.56 -0.02 1.25 16 15 N -0.61 -10.40 2.85 -161.69 -0.46 -10.86 16 16 C 0.52 9.41 7.13 -10.99 -0.08 9.33 16 17 O -0.50 -11.43 16.08 5.56 0.09 -11.34 16 18 C 0.05 0.67 4.16 -4.98 -0.02 0.65 16 19 N -0.47 -6.87 4.60 -170.37 -0.78 -7.65 16 20 C 0.06 0.74 6.36 -2.42 -0.02 0.72 16 21 C -0.11 -1.09 6.92 -26.61 -0.18 -1.27 16 22 C -0.14 -1.56 6.23 -104.04 -0.65 -2.21 16 23 C -0.09 -0.86 10.03 -39.67 -0.40 -1.26 16 24 C -0.14 -1.21 10.06 -39.53 -0.40 -1.61 16 25 C -0.10 -1.01 10.02 -39.68 -0.40 -1.41 16 26 C -0.11 -1.32 10.05 -39.27 -0.39 -1.71 16 27 C 0.10 1.25 5.49 -83.41 -0.46 0.79 16 28 C 0.12 2.31 3.88 -65.75 -0.25 2.06 16 29 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 30 C 0.17 4.27 4.80 -3.39 -0.02 4.26 16 31 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.33 7.89 -51.93 -0.41 0.92 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.75 7.65 -51.92 -0.40 0.35 16 38 H 0.10 1.34 7.90 -51.93 -0.41 0.93 16 39 H 0.07 0.74 7.93 -51.93 -0.41 0.33 16 40 H 0.08 1.07 7.30 -51.92 -0.38 0.69 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 45 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 48 H 0.02 0.55 7.94 -51.93 -0.41 0.14 16 49 H 0.10 2.90 6.22 -51.92 -0.32 2.57 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -35.18 386.34 -12.19 -47.38 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.76 Total: 1.31 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -4.06 Total: 1.48 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -1.26 Total: -62.34 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.18 -12.19 -47.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076583884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.989 kcal (2) G-P(sol) polarization free energy of solvation -35.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds