Wall clock time and date at job start Wed Apr 1 2020 00:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99673 * 2 1 4 4 H 1.48500 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47162 * 299.99700 * 3 2 1 6 6 H 1.48494 * 109.47322 * 60.00083 * 3 2 1 7 7 C 1.38806 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00460 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.46584 * 125.30907 * 180.02562 * 9 7 2 11 11 C 1.53264 * 108.16205 * 177.90873 * 10 9 7 12 12 H 1.08992 * 112.58405 * 222.76293 * 11 10 9 13 13 C 1.55091 * 109.73658 * 95.78487 * 11 10 9 14 14 C 1.54933 * 101.36890 * 212.30196 * 13 11 10 15 15 N 1.47347 * 104.99085 * 37.23294 * 14 13 11 16 16 C 1.34779 * 125.53419 * 156.50505 * 15 14 13 17 17 O 1.21277 * 120.00013 * 179.97438 * 16 15 14 18 18 C 1.50696 * 119.99623 * 359.97438 * 16 15 14 19 19 N 1.46904 * 109.47262 * 174.21797 * 18 16 15 20 20 C 1.47916 * 110.99899 * 284.24256 * 19 18 16 21 21 C 1.54599 * 102.62147 * 265.48529 * 20 19 18 22 22 C 1.51576 * 102.83718 * 334.46564 * 21 20 19 23 23 C 1.37919 * 131.56047 * 196.34877 * 22 21 20 24 24 C 1.38305 * 120.07937 * 179.28372 * 23 22 21 25 25 C 1.38308 * 119.88267 * 359.97438 * 24 23 22 26 26 C 1.37912 * 120.26321 * 0.12290 * 25 24 23 27 27 C 1.38958 * 107.95282 * 15.93569 * 22 21 20 28 28 C 1.47209 * 108.93999 * 336.48660 * 15 14 13 29 29 H 1.08999 * 112.29273 * 236.24684 * 28 15 14 30 30 C 1.46607 * 125.30700 * 0.02562 * 9 7 2 31 31 H 0.97005 * 120.00171 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.73661 * 58.21775 * 10 9 7 33 33 H 1.09004 * 109.73444 * 297.59226 * 10 9 7 34 34 H 1.09006 * 111.12613 * 94.27448 * 13 11 10 35 35 H 1.08990 * 111.02913 * 330.29428 * 13 11 10 36 36 H 1.08997 * 110.36076 * 278.32101 * 14 13 11 37 37 H 1.09009 * 110.35312 * 156.13817 * 14 13 11 38 38 H 1.08999 * 109.47912 * 294.21802 * 18 16 15 39 39 H 1.09001 * 109.47173 * 54.21785 * 18 16 15 40 40 H 1.09007 * 110.77774 * 23.76402 * 20 19 18 41 41 H 1.08998 * 110.78366 * 147.19957 * 20 19 18 42 42 H 1.09000 * 110.73828 * 216.13085 * 21 20 19 43 43 H 1.08998 * 110.89761 * 92.87464 * 21 20 19 44 44 H 1.08001 * 119.96442 * 359.28361 * 23 22 21 45 45 H 1.07998 * 120.06083 * 180.02562 * 24 23 22 46 46 H 1.07999 * 119.86826 * 180.14439 * 25 24 23 47 47 H 1.07998 * 119.89979 * 180.02562 * 26 25 24 48 48 H 1.08996 * 109.91720 * 78.43009 * 30 9 7 49 49 H 1.09009 * 109.91325 * 317.14732 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.9380 -3.7198 0.0016 11 6 0.8153 -4.7618 0.0543 12 1 1.0332 -5.5773 0.7438 13 6 0.4846 -5.2485 -1.3806 14 6 -1.0332 -5.5364 -1.2633 15 7 -1.5553 -4.4764 -0.3830 16 6 -2.8324 -4.0473 -0.3460 17 8 -3.1536 -3.1648 0.4214 18 6 -3.8612 -4.6640 -1.2582 19 7 -5.1893 -4.1278 -0.9319 20 6 -5.7158 -4.7352 0.3098 21 6 -6.5754 -5.9041 -0.2241 22 6 -6.9492 -5.4383 -1.6172 23 6 -7.9225 -5.8675 -2.4950 24 6 -8.0670 -5.2518 -3.7250 25 6 -7.2338 -4.2042 -4.0733 26 6 -6.2576 -3.7726 -3.1999 27 6 -6.1032 -4.3906 -1.9599 28 6 -0.4556 -3.9623 0.4498 29 1 -0.6762 -4.0321 1.5149 30 6 -0.1342 -2.5237 -0.0005 31 1 -0.4851 0.8401 -0.0004 32 1 2.5820 -3.8281 0.8743 33 1 2.5242 -3.8561 -0.9072 34 1 1.0370 -6.1561 -1.6247 35 1 0.6787 -4.4656 -2.1136 36 1 -1.1999 -6.5165 -0.8166 37 1 -1.5063 -5.4821 -2.2439 38 1 -3.6178 -4.4263 -2.2938 39 1 -3.8633 -5.7458 -1.1246 40 1 -4.9026 -5.1067 0.9335 41 1 -6.3308 -4.0221 0.8586 42 1 -7.4660 -6.0398 0.3895 43 1 -5.9946 -6.8254 -0.2680 44 1 -8.5727 -6.6854 -2.2217 45 1 -8.8295 -5.5878 -4.4120 46 1 -7.3483 -3.7220 -5.0329 47 1 -5.6105 -2.9538 -3.4777 48 1 -0.5221 -2.3538 -1.0048 49 1 -0.5739 -1.8096 0.6959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076583884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:39 Heat of formation + Delta-G solvation = 34.775694 kcal Electronic energy + Delta-G solvation = -30230.824851 eV Core-core repulsion = 26351.253589 eV Total energy + Delta-G solvation = -3879.571263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.03528 -41.23183 -39.31071 -37.52315 -36.63429 -34.15823 -33.38926 -32.23735 -31.27396 -30.32012 -29.84838 -28.62834 -27.40977 -26.33598 -24.07755 -23.82929 -22.48361 -22.16701 -21.97978 -20.93380 -19.99341 -18.93922 -18.25845 -17.87263 -17.16204 -17.03134 -16.62133 -16.39165 -16.12010 -16.05471 -15.66285 -15.17612 -14.99260 -14.80776 -14.56411 -14.35122 -14.09836 -13.86026 -13.74310 -13.55699 -13.47082 -13.31271 -13.22103 -13.01378 -12.95047 -12.81305 -12.56669 -12.44603 -12.18414 -12.12922 -11.89164 -11.79740 -11.72220 -11.49062 -11.40252 -11.02854 -10.77333 -10.32857 -9.73356 -9.59711 -8.92958 -8.86341 -7.80555 -5.26342 0.34480 0.45045 1.40832 1.43437 1.54062 1.65564 1.88039 2.46287 2.66663 2.81298 3.29221 3.34722 3.60020 3.62294 3.72287 3.76157 3.85617 3.95064 4.00169 4.11353 4.13362 4.18446 4.28075 4.32918 4.38243 4.49476 4.52429 4.53122 4.54965 4.67956 4.70905 4.72604 4.84936 4.90338 4.94652 4.98578 5.11208 5.15530 5.18220 5.22738 5.41056 5.45653 5.49162 5.49888 5.58604 5.60468 5.80278 5.81763 5.86975 6.23322 6.29054 6.63491 7.05425 7.26868 7.77215 8.37388 9.21374 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014779 B = 0.002890 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.176878 B = 9687.801535 C =10582.124806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.074 4.074 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.625 5.625 10 C 0.136 3.864 11 C -0.092 4.092 12 H 0.131 0.869 13 C -0.114 4.114 14 C 0.098 3.902 15 N -0.612 5.612 16 C 0.514 3.486 17 O -0.567 6.567 18 C 0.065 3.935 19 N -0.506 5.506 20 C 0.056 3.944 21 C -0.099 4.099 22 C -0.146 4.146 23 C -0.091 4.091 24 C -0.129 4.129 25 C -0.105 4.105 26 C -0.133 4.133 27 C 0.068 3.932 28 C 0.120 3.880 29 H 0.068 0.932 30 C 0.187 3.813 31 H 0.241 0.759 32 H 0.031 0.969 33 H 0.037 0.963 34 H 0.127 0.873 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.147 0.853 45 H 0.154 0.846 46 H 0.146 0.854 47 H 0.111 0.889 48 H -0.024 1.024 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.976 -22.313 -7.304 26.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.266 4.266 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.369 4.369 8 H 0.107 0.893 9 N -0.352 5.352 10 C 0.011 3.989 11 C -0.111 4.111 12 H 0.149 0.851 13 C -0.151 4.151 14 C -0.023 4.023 15 N -0.347 5.347 16 C 0.302 3.698 17 O -0.444 6.444 18 C -0.064 4.064 19 N -0.224 5.224 20 C -0.070 4.070 21 C -0.136 4.136 22 C -0.149 4.149 23 C -0.109 4.109 24 C -0.148 4.148 25 C -0.124 4.124 26 C -0.153 4.153 27 C -0.028 4.028 28 C 0.015 3.985 29 H 0.086 0.914 30 C 0.060 3.940 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.145 0.855 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.164 0.836 45 H 0.172 0.828 46 H 0.164 0.836 47 H 0.129 0.871 48 H -0.006 1.006 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.118 -21.073 -6.793 25.735 hybrid contribution 0.402 1.384 0.156 1.450 sum -12.716 -19.688 -6.637 24.360 Atomic orbital electron populations 1.70294 1.06588 1.24699 1.58308 1.25810 0.96503 1.01616 1.02710 0.84952 0.78401 0.79106 0.76546 1.18118 1.22095 1.22161 1.19536 0.91172 0.83538 1.42667 0.89254 1.44513 1.02089 1.01676 1.86914 1.21285 0.94919 0.83941 0.98773 1.22970 0.91716 0.97307 0.99137 0.85145 1.22849 0.95121 1.02629 0.94526 1.22668 0.94357 0.90792 0.94527 1.48669 1.07118 1.38801 1.40105 1.20823 0.82383 0.82460 0.84091 1.90737 1.80177 1.31687 1.41839 1.21921 0.86502 0.98934 0.99010 1.59494 1.01418 1.58330 1.03110 1.23093 0.98367 0.94987 0.90584 1.21684 1.01227 0.98524 0.92208 1.21249 0.99419 0.96328 0.97862 1.20739 0.96734 1.00294 0.93132 1.21444 1.00089 0.96419 0.96821 1.21213 0.94344 0.97243 0.99583 1.20726 1.00876 1.00548 0.93124 1.19706 0.95274 0.95405 0.92413 1.22583 0.86892 0.94932 0.94057 0.91393 1.21128 0.83978 0.92885 0.95976 0.94934 0.95123 0.94557 0.85471 0.93123 0.87523 0.89344 0.87521 0.88091 0.90377 0.90493 0.87730 0.88360 0.83562 0.82796 0.83591 0.87120 1.00649 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.01 10.17 21.65 0.22 -62.79 16 2 C -0.07 -4.50 5.48 84.86 0.47 -4.04 16 3 Si 0.98 48.53 29.55 68.60 2.03 50.56 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 7 C -0.24 -14.09 10.25 84.03 0.86 -13.23 16 8 H 0.09 4.90 7.83 -2.91 -0.02 4.88 16 9 N -0.63 -33.76 3.37 -698.79 -2.36 -36.12 16 10 C 0.14 5.39 6.66 86.45 0.58 5.97 16 11 C -0.09 -2.80 3.91 -9.21 -0.04 -2.84 16 12 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 13 C -0.11 -2.70 6.26 31.97 0.20 -2.50 16 14 C 0.10 2.11 6.65 86.88 0.58 2.69 16 15 N -0.61 -20.82 2.85 -783.85 -2.23 -23.05 16 16 C 0.51 19.32 7.13 87.66 0.62 19.94 16 17 O -0.57 -28.03 16.08 -3.02 -0.05 -28.08 16 18 C 0.06 1.79 4.16 85.55 0.36 2.14 16 19 N -0.51 -15.26 4.60 -692.94 -3.18 -18.44 16 20 C 0.06 1.43 6.36 86.65 0.55 1.98 16 21 C -0.10 -1.71 6.92 30.67 0.21 -1.50 16 22 C -0.15 -2.97 6.23 -19.49 -0.12 -3.09 16 23 C -0.09 -1.43 10.03 22.21 0.22 -1.20 16 24 C -0.13 -1.90 10.06 22.30 0.22 -1.67 16 25 C -0.11 -1.89 10.02 22.21 0.22 -1.67 16 26 C -0.13 -3.23 10.05 22.47 0.23 -3.00 16 27 C 0.07 1.76 5.49 38.28 0.21 1.97 16 28 C 0.12 4.88 3.88 46.02 0.18 5.06 16 29 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 30 C 0.19 10.27 4.80 86.74 0.42 10.69 16 31 H 0.24 15.75 8.31 -92.70 -0.77 14.98 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.04 1.38 7.74 -2.38 -0.02 1.36 16 34 H 0.13 1.86 8.14 -2.38 -0.02 1.85 16 35 H 0.05 1.55 7.89 -2.39 -0.02 1.53 16 36 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.62 7.65 -2.38 -0.02 1.60 16 38 H 0.11 2.80 7.90 -2.39 -0.02 2.78 16 39 H 0.10 2.02 7.93 -2.39 -0.02 2.00 16 40 H 0.08 2.03 7.30 -2.38 -0.02 2.01 16 41 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 46 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 47 H 0.11 2.89 8.06 -2.91 -0.02 2.87 16 48 H -0.02 -1.51 7.94 -2.39 -0.02 -1.53 16 49 H 0.04 2.38 6.22 -2.38 -0.01 2.37 16 Total: -1.00 -87.60 386.34 1.32 -86.28 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.93 Total: 15.96 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 5.97 Total: 15.69 kcal Atomic # 7 Polarization: -132.84 SS G_CDS: -7.56 Total: -140.40 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.05 Total: -28.08 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -87.60 1.32 -86.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076583884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.056 kcal (2) G-P(sol) polarization free energy of solvation -87.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds