Wall clock time and date at job start Wed Apr 1 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99853 * 2 1 4 4 H 1.48507 * 109.46776 * 239.99717 * 3 2 1 5 5 H 1.48489 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46800 * 120.00538 * 3 2 1 7 7 C 1.38807 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00381 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00056 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.94848 * 336.40540 * 10 9 7 12 12 C 1.53949 * 113.66075 * 107.81673 * 10 9 7 13 13 C 1.53947 * 87.29859 * 89.73850 * 12 10 9 14 14 H 1.09000 * 113.65881 * 270.25975 * 13 12 10 15 15 N 1.46501 * 113.66466 * 139.20634 * 13 12 10 16 16 C 1.34779 * 120.00060 * 107.80852 * 15 13 12 17 17 O 1.21280 * 119.99820 * 354.45261 * 16 15 13 18 18 C 1.50696 * 119.99838 * 174.44704 * 16 15 13 19 19 C 1.50704 * 115.55179 * 301.83353 * 18 16 15 20 20 C 1.38673 * 120.41653 * 327.96486 * 19 18 16 21 21 C 1.38624 * 118.41764 * 179.77981 * 20 19 18 22 22 C 1.38231 * 119.16412 * 0.47739 * 21 20 19 23 23 N 1.31858 * 120.75879 * 359.76538 * 22 21 20 24 24 C 1.31884 * 121.72822 * 0.02562 * 23 22 21 25 25 C 1.53001 * 117.50009 * 156.15899 * 18 16 15 26 26 C 1.53008 * 117.49756 * 87.50061 * 18 16 15 27 27 C 1.52900 * 86.78248 * 24.73172 * 13 12 10 28 28 C 1.52913 * 121.13680 * 209.38070 * 27 13 12 29 29 C 1.53950 * 86.88411 * 259.13488 * 28 27 13 30 30 C 1.52911 * 121.13702 * 100.81946 * 27 13 12 31 31 H 0.97005 * 119.99787 * 359.97438 * 1 2 3 32 32 H 0.97004 * 119.99705 * 0.02562 * 9 7 2 33 33 H 1.09003 * 113.57727 * 204.34138 * 12 10 9 34 34 H 1.09003 * 113.58148 * 335.05049 * 12 10 9 35 35 H 0.96998 * 119.99867 * 287.81169 * 15 13 12 36 36 H 1.07996 * 120.78959 * 0.02929 * 20 19 18 37 37 H 1.07997 * 120.42027 * 180.26381 * 21 20 19 38 38 H 1.07992 * 119.61946 * 179.78424 * 22 21 20 39 39 H 1.08002 * 119.61487 * 179.97438 * 24 23 22 40 40 H 1.09003 * 117.49436 * 0.02562 * 25 18 16 41 41 H 1.08995 * 117.50003 * 145.01911 * 25 18 16 42 42 H 1.08997 * 117.49781 * 214.97994 * 26 18 16 43 43 H 1.08996 * 117.49590 * 359.97438 * 26 18 16 44 44 H 1.08996 * 113.66381 * 13.65657 * 28 27 13 45 45 H 1.09003 * 113.66176 * 144.61817 * 28 27 13 46 46 H 1.08991 * 113.57849 * 89.91582 * 29 28 27 47 47 H 1.09003 * 113.57757 * 220.70982 * 29 28 27 48 48 H 1.09000 * 113.66593 * 215.29473 * 30 27 13 49 49 H 1.09003 * 113.66095 * 346.25816 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 1 3.0667 -3.5651 -0.4010 12 6 1.9943 -4.4070 1.3444 13 6 0.7251 -5.0986 0.8146 14 1 -0.1945 -4.5599 1.0432 15 7 0.6498 -6.5236 1.1466 16 6 -0.2277 -6.9539 2.0746 17 8 -0.8835 -6.1530 2.7065 18 6 -0.3941 -8.4302 2.3269 19 6 -0.8009 -9.2522 1.1311 20 6 -1.6079 -8.7053 0.1448 21 6 -1.9531 -9.4971 -0.9394 22 6 -1.4930 -10.7993 -0.9962 23 7 -0.7311 -11.2877 -0.0372 24 6 -0.3796 -10.5623 1.0066 25 6 -0.9329 -8.8571 3.6938 26 6 0.5410 -9.0824 3.3473 27 6 1.2650 -4.8232 -0.5891 28 6 0.3200 -4.6175 -1.7735 29 6 0.6277 -6.0745 -2.1641 30 6 1.9572 -5.9198 -1.3993 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 0.0016 33 1 2.8292 -5.0896 1.5025 34 1 1.8129 -3.7558 2.1995 35 1 1.2316 -7.1573 0.6985 36 1 -1.9559 -7.6855 0.2178 37 1 -2.5766 -9.1026 -1.7281 38 1 -1.7603 -11.4237 -1.8357 39 1 0.2454 -10.9971 1.7726 40 1 -1.1673 -8.0699 4.4105 41 1 -1.5812 -9.7325 3.7283 42 1 0.8617 -10.1060 3.1539 43 1 1.2768 -8.4436 3.8358 44 1 -0.7172 -4.4524 -1.4820 45 1 0.6785 -3.8855 -2.4972 46 1 -0.0517 -6.7989 -1.7153 47 1 0.7550 -6.2207 -3.2367 48 1 2.7766 -5.5551 -2.0187 49 1 2.2292 -6.7946 -0.8085 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078705955.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:54 Heat of formation + Delta-G solvation = 86.683269 kcal Electronic energy + Delta-G solvation = -30333.626488 eV Core-core repulsion = 26456.306107 eV Total energy + Delta-G solvation = -3877.320381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15243 -40.40859 -39.16317 -36.73101 -35.08934 -34.06711 -32.77599 -32.32504 -31.12013 -29.64025 -25.94986 -25.57889 -24.41096 -24.11849 -23.95567 -23.19612 -22.53702 -21.87960 -20.16728 -19.86439 -18.23790 -17.68475 -17.27366 -16.90084 -16.37169 -15.94762 -15.60478 -15.29912 -15.05050 -14.82123 -14.56275 -14.21366 -14.04754 -13.97263 -13.28477 -13.23108 -12.94378 -12.72698 -12.49959 -12.33323 -12.13160 -11.98299 -11.79379 -11.73555 -11.56917 -11.31920 -10.95606 -10.94709 -10.84137 -10.67547 -10.26498 -10.14233 -10.06833 -9.97617 -9.91613 -9.65549 -9.58518 -9.41481 -9.12594 -8.84795 -8.68520 -6.99602 -5.79831 -3.09414 0.74242 0.97695 2.50029 3.11883 3.31340 3.42454 3.47079 3.48104 3.68425 4.00018 4.25390 4.43687 4.49553 4.52965 4.59996 4.66570 4.68669 4.70573 4.84528 4.91446 4.94693 5.11956 5.13692 5.23943 5.28821 5.40766 5.42380 5.49665 5.58635 5.60916 5.74128 5.81312 5.84249 5.87508 5.94240 5.97756 5.99210 6.01886 6.07139 6.21468 6.35366 6.36146 6.45079 6.59857 6.67485 6.72571 6.81948 7.05082 7.61999 7.64751 7.68317 8.28404 8.38405 9.49421 10.05996 10.40411 11.42119 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.002947 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.221866 B = 9499.740471 C =10281.702465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.700 5.700 10 C 0.186 3.814 11 H 0.068 0.932 12 C -0.183 4.183 13 C 0.153 3.847 14 H 0.114 0.886 15 N -0.707 5.707 16 C 0.549 3.451 17 O -0.530 6.530 18 C -0.124 4.124 19 C -0.092 4.092 20 C -0.061 4.061 21 C -0.164 4.164 22 C 0.093 3.907 23 N -0.481 5.481 24 C 0.100 3.900 25 C -0.132 4.132 26 C -0.154 4.154 27 C -0.127 4.127 28 C -0.112 4.112 29 C -0.141 4.141 30 C -0.109 4.109 31 H 0.257 0.743 32 H 0.386 0.614 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.397 0.603 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.085 0.915 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.520 -23.820 -0.233 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.338 5.338 10 C 0.073 3.927 11 H 0.086 0.914 12 C -0.225 4.225 13 C 0.049 3.951 14 H 0.132 0.868 15 N -0.357 5.357 16 C 0.333 3.667 17 O -0.405 6.405 18 C -0.128 4.128 19 C -0.094 4.094 20 C -0.087 4.087 21 C -0.183 4.183 22 C -0.063 4.063 23 N -0.189 5.189 24 C -0.057 4.057 25 C -0.169 4.169 26 C -0.191 4.191 27 C -0.130 4.130 28 C -0.150 4.150 29 C -0.178 4.178 30 C -0.147 4.147 31 H 0.066 0.934 32 H 0.221 0.779 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.232 0.768 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.104 0.896 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.626 -23.889 0.123 23.897 hybrid contribution 0.042 1.538 -0.161 1.547 sum -0.584 -22.351 -0.038 22.358 Atomic orbital electron populations 1.69658 1.05111 1.25919 1.57026 1.24755 0.95503 0.97730 1.02620 0.86262 0.78532 0.83483 0.77850 1.21232 1.21690 1.21224 1.19210 0.91024 0.83890 1.43454 0.91075 1.42078 1.05746 0.99115 1.86826 1.20784 0.94831 0.85052 0.92062 0.91430 1.24309 0.96171 0.99710 1.02316 1.22304 0.99803 0.79137 0.93822 0.86822 1.46043 1.38977 1.09903 1.40761 1.19244 0.79677 0.87904 0.79865 1.90747 1.46389 1.55657 1.47756 1.20128 1.09143 0.92696 0.90822 1.19789 0.99230 0.95207 0.95166 1.21490 0.94296 1.00393 0.92535 1.22171 1.01565 0.95473 0.99131 1.22797 0.93341 0.93467 0.96727 1.67735 1.11762 1.37640 1.01736 1.22639 0.97257 0.90158 0.95619 1.23102 0.96186 1.03270 0.94320 1.23202 0.94108 1.01926 0.99865 1.23499 0.98394 0.98146 0.92920 1.22533 0.99285 0.95557 0.97603 1.22894 0.97346 0.98046 0.99520 1.22534 0.97090 0.97182 0.97895 0.93351 0.77937 0.91294 0.90894 0.76784 0.84867 0.84467 0.82663 0.82684 0.86946 0.87778 0.87393 0.87498 0.91883 0.89406 0.91048 0.91987 0.89611 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.70 -17.02 5.09 -53.00 -0.27 -17.29 16 10 C 0.19 3.56 4.36 -67.48 -0.29 3.26 16 11 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 12 C -0.18 -3.18 7.68 -25.75 -0.20 -3.38 16 13 C 0.15 2.47 4.00 -67.49 -0.27 2.20 16 14 H 0.11 2.23 7.54 -51.93 -0.39 1.84 16 15 N -0.71 -9.21 5.26 -53.38 -0.28 -9.49 16 16 C 0.55 7.67 6.10 -10.99 -0.07 7.61 16 17 O -0.53 -9.76 16.18 5.56 0.09 -9.67 16 18 C -0.12 -1.28 2.37 -156.81 -0.37 -1.65 16 19 C -0.09 -0.90 5.46 -104.48 -0.57 -1.47 16 20 C -0.06 -0.62 9.44 -39.28 -0.37 -0.99 16 21 C -0.16 -1.39 10.11 -39.44 -0.40 -1.79 16 22 C 0.09 0.80 11.18 -17.54 -0.20 0.61 16 23 N -0.48 -4.85 10.36 -13.25 -0.14 -4.99 16 24 C 0.10 0.91 10.54 -17.55 -0.19 0.73 16 25 C -0.13 -1.21 9.74 -26.69 -0.26 -1.47 16 26 C -0.15 -1.21 9.59 -26.69 -0.26 -1.46 16 27 C -0.13 -1.95 0.92 -154.71 -0.14 -2.09 16 28 C -0.11 -1.74 7.48 -26.28 -0.20 -1.93 16 29 C -0.14 -1.70 8.10 -25.64 -0.21 -1.91 16 30 C -0.11 -1.34 7.47 -26.18 -0.20 -1.53 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.39 10.11 7.81 -40.82 -0.32 9.79 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.40 4.39 6.73 -40.82 -0.27 4.12 16 36 H 0.13 1.49 7.50 -52.49 -0.39 1.10 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.16 1.08 5.95 -52.49 -0.31 0.76 16 40 H 0.11 1.18 7.87 -51.93 -0.41 0.77 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.11 0.60 6.11 -51.93 -0.32 0.28 16 43 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.06 0.61 6.42 -51.93 -0.33 0.28 16 LS Contribution 400.41 15.07 6.03 6.03 Total: -1.00 -32.01 400.41 -10.66 -42.67 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -7.37 Total: 15.09 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -4.43 Total: -12.45 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.04 Total: -58.85 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.01 -10.66 -42.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078705955.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.355 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds