Wall clock time and date at job start Wed Apr 1 2020 00:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00338 * 2 1 4 4 H 1.48502 * 109.46829 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47261 * 119.99638 * 3 2 1 6 6 H 1.48499 * 109.47154 * 239.99628 * 3 2 1 7 7 C 1.38816 * 119.99798 * 180.27046 * 2 1 3 8 8 H 1.07997 * 119.99985 * 196.03908 * 7 2 1 9 9 N 1.36937 * 119.99845 * 16.03596 * 7 2 1 10 10 C 1.46538 * 119.73527 * 203.84455 * 9 7 2 11 11 C 1.53954 * 107.58257 * 237.77265 * 10 9 7 12 12 C 1.53071 * 108.39795 * 299.98849 * 11 10 9 13 13 H 1.09002 * 114.44264 * 276.30061 * 12 11 10 14 14 C 1.52784 * 111.39109 * 144.14789 * 12 11 10 15 15 N 1.47286 * 87.32405 * 274.42968 * 14 12 11 16 16 C 1.34779 * 136.54848 * 150.72020 * 15 14 12 17 17 O 1.21273 * 120.00237 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99721 * 359.97438 * 16 15 14 19 19 N 1.46898 * 109.47108 * 186.56069 * 18 16 15 20 20 C 1.47900 * 110.99758 * 76.46129 * 19 18 16 21 21 C 1.54595 * 102.63370 * 94.68214 * 20 19 18 22 22 C 1.51580 * 102.81613 * 25.59578 * 21 20 19 23 23 C 1.37912 * 131.56627 * 163.78497 * 22 21 20 24 24 C 1.38303 * 120.08092 * 180.27972 * 23 22 21 25 25 C 1.38306 * 119.88464 * 0.02562 * 24 23 22 26 26 C 1.37911 * 120.26069 * 359.84425 * 25 24 23 27 27 C 1.38963 * 107.94557 * 343.80938 * 22 21 20 28 28 C 1.46465 * 86.91009 * 330.71507 * 15 14 12 29 29 H 1.09004 * 111.44314 * 277.09719 * 28 15 14 30 30 C 1.45702 * 119.73536 * 24.12424 * 9 7 2 31 31 H 0.97002 * 119.99734 * 359.73132 * 1 2 3 32 32 H 1.08998 * 109.70913 * 356.13068 * 10 9 7 33 33 H 1.09007 * 109.70440 * 116.75494 * 10 9 7 34 34 H 1.08991 * 108.88943 * 180.91699 * 11 10 9 35 35 H 1.09003 * 110.99175 * 60.28841 * 11 10 9 36 36 H 1.08994 * 114.25978 * 159.76307 * 14 12 11 37 37 H 1.09006 * 113.03695 * 28.90729 * 14 12 11 38 38 H 1.08997 * 109.47405 * 306.56706 * 18 16 15 39 39 H 1.08998 * 109.46874 * 66.56093 * 18 16 15 40 40 H 1.09004 * 110.77781 * 212.96392 * 20 19 18 41 41 H 1.08995 * 110.78054 * 336.39115 * 20 19 18 42 42 H 1.08994 * 110.75117 * 143.92589 * 21 20 19 43 43 H 1.09003 * 110.74391 * 267.08505 * 21 20 19 44 44 H 1.08001 * 119.96294 * 0.26052 * 23 22 21 45 45 H 1.08001 * 120.05860 * 179.97438 * 24 23 22 46 46 H 1.07991 * 119.87131 * 179.87291 * 25 24 23 47 47 H 1.08004 * 119.89725 * 180.02562 * 26 25 24 48 48 H 1.09000 * 108.78778 * 260.87847 * 30 9 7 49 49 H 1.09000 * 108.79121 * 19.20957 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1040 1.6962 -1.2124 7 6 2.0102 -1.2022 -0.0057 8 1 3.0586 -1.2217 0.2526 9 7 1.3654 -2.3634 -0.3388 10 6 1.8883 -3.6472 0.1364 11 6 2.1682 -4.5215 -1.0995 12 6 0.8549 -4.7152 -1.8616 13 1 0.2277 -5.5217 -1.4818 14 6 1.0859 -4.7430 -3.3717 15 7 1.0042 -3.2728 -3.3417 16 6 1.5177 -2.2496 -4.0529 17 8 1.2413 -1.1064 -3.7571 18 6 2.4355 -2.5261 -5.2158 19 7 2.9801 -1.2591 -5.7219 20 6 4.0478 -0.7492 -4.8345 21 6 5.3313 -1.2938 -5.5023 22 6 4.9132 -1.4585 -6.9499 23 6 5.6522 -1.6220 -8.1029 24 6 5.0140 -1.7464 -9.3235 25 6 3.6329 -1.7062 -9.3863 26 6 2.8893 -1.5456 -8.2360 27 6 3.5250 -1.4226 -7.0015 28 6 0.1125 -3.4249 -2.1897 29 1 -0.9128 -3.6224 -2.5028 30 6 0.1683 -2.3131 -1.1679 31 1 -0.4850 0.8401 0.0039 32 1 2.8223 -3.4870 0.6750 33 1 1.1597 -4.1197 0.7953 34 1 2.5436 -5.4899 -0.7690 35 1 2.9022 -4.0502 -1.7531 36 1 0.2821 -5.2121 -3.9391 37 1 2.0719 -5.1185 -3.6456 38 1 3.2532 -3.1682 -4.8887 39 1 1.8774 -3.0242 -6.0086 40 1 4.0516 0.3408 -4.8211 41 1 3.9367 -1.1489 -3.8266 42 1 6.1465 -0.5755 -5.4153 43 1 5.6154 -2.2524 -5.0681 44 1 6.7306 -1.6525 -8.0525 45 1 5.5931 -1.8740 -10.2262 46 1 3.1349 -1.8013 -10.3398 47 1 1.8111 -1.5154 -8.2918 48 1 -0.7081 -2.3841 -0.5237 49 1 0.1429 -1.3568 -1.6902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084839679.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:50 Heat of formation + Delta-G solvation = 92.758779 kcal Electronic energy + Delta-G solvation = -31059.672775 eV Core-core repulsion = 27182.615848 eV Total energy + Delta-G solvation = -3877.056927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.99036 -40.39384 -37.79128 -36.39787 -35.17968 -32.47211 -32.07764 -30.39859 -30.08211 -29.09271 -28.80010 -26.98613 -26.11792 -23.80658 -23.08455 -22.82139 -21.33246 -21.21743 -20.91310 -19.63061 -17.73836 -17.05243 -16.71831 -16.23908 -15.89730 -15.70303 -15.48107 -15.21264 -14.84167 -14.43598 -13.97652 -13.69800 -13.62550 -13.50815 -13.23612 -13.12784 -12.94684 -12.61780 -12.58530 -12.35716 -12.25089 -11.88175 -11.79185 -11.60396 -11.39932 -11.16680 -11.05371 -10.93057 -10.64790 -10.60638 -10.46489 -10.20080 -9.87708 -9.75505 -9.74522 -9.42901 -8.91795 -8.78675 -8.24876 -8.05544 -7.88801 -6.57829 -5.62659 -3.03037 1.19355 1.27276 3.13709 3.26404 3.49642 3.56743 3.59435 3.61127 3.78038 4.49653 4.63565 4.71245 4.73247 4.78532 4.90458 4.94021 5.07630 5.12912 5.20718 5.31030 5.32704 5.42476 5.45839 5.51294 5.52779 5.56573 5.63944 5.69998 5.75378 5.86507 5.90077 5.91548 6.10921 6.14472 6.16369 6.26555 6.29902 6.36592 6.38908 6.39491 6.53350 6.59886 6.65943 6.78388 6.87836 7.00404 7.24940 7.53222 7.79713 7.97319 8.38565 8.60029 8.87280 9.38619 10.03579 10.50483 11.45658 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.003993 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.086008 B = 7010.525566 C = 8262.678822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.014 3.986 3 Si 0.900 3.100 4 H -0.291 1.291 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.061 0.939 9 N -0.585 5.585 10 C 0.148 3.852 11 C -0.112 4.112 12 C -0.114 4.114 13 H 0.089 0.911 14 C 0.094 3.906 15 N -0.637 5.637 16 C 0.536 3.464 17 O -0.492 6.492 18 C 0.051 3.949 19 N -0.473 5.473 20 C 0.059 3.941 21 C -0.113 4.113 22 C -0.138 4.138 23 C -0.090 4.090 24 C -0.137 4.137 25 C -0.106 4.106 26 C -0.113 4.113 27 C 0.098 3.902 28 C 0.121 3.879 29 H 0.071 0.929 30 C 0.168 3.832 31 H 0.252 0.748 32 H 0.053 0.947 33 H 0.024 0.976 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.028 0.972 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 -11.415 -15.424 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.185 4.185 3 Si 0.730 3.270 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.079 0.921 9 N -0.307 5.307 10 C 0.021 3.979 11 C -0.151 4.151 12 C -0.133 4.133 13 H 0.107 0.893 14 C -0.030 4.030 15 N -0.375 5.375 16 C 0.323 3.677 17 O -0.364 6.364 18 C -0.078 4.078 19 N -0.189 5.189 20 C -0.068 4.068 21 C -0.151 4.151 22 C -0.140 4.140 23 C -0.109 4.109 24 C -0.156 4.156 25 C -0.124 4.124 26 C -0.133 4.133 27 C 0.001 3.999 28 C 0.017 3.983 29 H 0.089 0.911 30 C 0.042 3.958 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.142 0.858 48 H 0.046 0.954 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.895 -10.042 -15.332 19.582 hybrid contribution 0.938 0.284 -0.219 1.005 sum 7.833 -9.759 -15.552 19.961 Atomic orbital electron populations 1.70001 1.05249 1.25393 1.54020 1.24861 0.95175 0.98045 1.00401 0.86413 0.79019 0.83833 0.77717 1.21740 1.21314 1.20970 1.19019 0.92102 0.84981 1.42377 0.92104 1.43460 1.30415 1.01102 1.55758 1.20894 0.97195 0.87444 0.92395 1.21971 0.94634 0.99344 0.99183 1.22566 0.98855 0.97883 0.94020 0.89275 1.23093 1.01076 0.81636 0.97170 1.49579 1.49602 1.05514 1.32847 1.19656 0.81591 0.84163 0.82307 1.90806 1.58907 1.19888 1.66776 1.21973 0.98258 0.90311 0.97225 1.59588 1.33735 1.25726 0.99860 1.23167 0.85634 1.01739 0.96258 1.21762 0.99947 1.02261 0.91120 1.21086 0.94661 1.02813 0.95478 1.20385 0.99435 0.99863 0.91194 1.21017 0.94623 1.02640 0.97293 1.20900 0.93974 0.99871 0.97669 1.20541 1.00182 1.02606 0.90012 1.19636 0.91869 0.97667 0.90729 1.22678 0.92500 0.96466 0.86677 0.91076 1.20179 0.88822 0.96830 0.90013 0.93768 0.92870 0.95862 0.92943 0.92112 0.90525 0.91436 0.91767 0.88514 0.88936 0.88952 0.89481 0.90133 0.86307 0.85942 0.85723 0.85830 0.95425 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 10.97 55.49 0.61 -26.90 16 2 C 0.01 0.41 4.91 -17.43 -0.09 0.32 16 3 Si 0.90 23.43 29.58 -169.99 -5.03 18.40 16 4 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.26 -7.25 9.54 -15.06 -0.14 -7.40 16 8 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 9 N -0.58 -14.79 3.01 -174.39 -0.52 -15.31 16 10 C 0.15 3.00 6.49 -3.52 -0.02 2.98 16 11 C -0.11 -1.81 5.72 -26.20 -0.15 -1.96 16 12 C -0.11 -1.69 4.47 -91.00 -0.41 -2.10 16 13 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 14 C 0.09 1.21 7.76 -12.23 -0.09 1.11 16 15 N -0.64 -11.32 3.27 -191.25 -0.63 -11.95 16 16 C 0.54 10.52 7.48 -10.98 -0.08 10.44 16 17 O -0.49 -12.32 15.30 5.56 0.09 -12.23 16 18 C 0.05 0.78 5.09 -4.98 -0.03 0.76 16 19 N -0.47 -7.72 4.58 -170.39 -0.78 -8.50 16 20 C 0.06 0.93 6.39 -2.43 -0.02 0.92 16 21 C -0.11 -1.40 6.93 -26.61 -0.18 -1.58 16 22 C -0.14 -1.75 6.23 -104.04 -0.65 -2.40 16 23 C -0.09 -0.97 10.03 -39.68 -0.40 -1.36 16 24 C -0.14 -1.32 10.06 -39.53 -0.40 -1.72 16 25 C -0.11 -1.06 10.02 -39.68 -0.40 -1.46 16 26 C -0.11 -1.39 10.04 -39.27 -0.39 -1.79 16 27 C 0.10 1.38 5.49 -83.41 -0.46 0.92 16 28 C 0.12 2.28 4.09 -77.70 -0.32 1.97 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 C 0.17 4.15 4.60 -5.42 -0.02 4.13 16 31 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.05 1.07 7.86 -51.93 -0.41 0.66 16 33 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.07 7.64 -51.93 -0.40 0.68 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 38 H 0.06 0.89 7.94 -51.93 -0.41 0.48 16 39 H 0.10 1.29 7.94 -51.93 -0.41 0.88 16 40 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.09 1.65 7.36 -51.93 -0.38 1.27 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 48 H 0.03 0.74 8.01 -51.93 -0.42 0.33 16 49 H 0.10 3.05 4.92 -51.93 -0.26 2.79 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -34.73 386.57 -12.41 -47.14 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.72 Total: 1.77 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -4.25 Total: 1.77 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -1.32 Total: -62.66 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.03 Total: 18.40 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.73 -12.41 -47.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084839679.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.899 kcal (2) G-P(sol) polarization free energy of solvation -34.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds