Wall clock time and date at job start Wed Apr 1 2020 00:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00338 * 2 1 4 4 H 1.48502 * 109.46829 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47261 * 119.99638 * 3 2 1 6 6 H 1.48499 * 109.47154 * 239.99628 * 3 2 1 7 7 C 1.38816 * 119.99798 * 180.27046 * 2 1 3 8 8 H 1.07997 * 119.99985 * 196.03908 * 7 2 1 9 9 N 1.36937 * 119.99845 * 16.03596 * 7 2 1 10 10 C 1.46538 * 119.73527 * 203.84455 * 9 7 2 11 11 C 1.53954 * 107.58257 * 237.77265 * 10 9 7 12 12 C 1.53071 * 108.39795 * 299.98849 * 11 10 9 13 13 H 1.09002 * 114.44264 * 276.30061 * 12 11 10 14 14 C 1.52784 * 111.39109 * 144.14789 * 12 11 10 15 15 N 1.47286 * 87.32405 * 274.42968 * 14 12 11 16 16 C 1.34779 * 136.54848 * 150.72020 * 15 14 12 17 17 O 1.21273 * 120.00237 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99721 * 359.97438 * 16 15 14 19 19 N 1.46898 * 109.47108 * 186.56069 * 18 16 15 20 20 C 1.47900 * 110.99758 * 76.46129 * 19 18 16 21 21 C 1.54595 * 102.63370 * 94.68214 * 20 19 18 22 22 C 1.51580 * 102.81613 * 25.59578 * 21 20 19 23 23 C 1.37912 * 131.56627 * 163.78497 * 22 21 20 24 24 C 1.38303 * 120.08092 * 180.27972 * 23 22 21 25 25 C 1.38306 * 119.88464 * 0.02562 * 24 23 22 26 26 C 1.37911 * 120.26069 * 359.84425 * 25 24 23 27 27 C 1.38963 * 107.94557 * 343.80938 * 22 21 20 28 28 C 1.46465 * 86.91009 * 330.71507 * 15 14 12 29 29 H 1.09004 * 111.44314 * 277.09719 * 28 15 14 30 30 C 1.45702 * 119.73536 * 24.12424 * 9 7 2 31 31 H 0.97002 * 119.99734 * 359.73132 * 1 2 3 32 32 H 1.08998 * 109.70913 * 356.13068 * 10 9 7 33 33 H 1.09007 * 109.70440 * 116.75494 * 10 9 7 34 34 H 1.08991 * 108.88943 * 180.91699 * 11 10 9 35 35 H 1.09003 * 110.99175 * 60.28841 * 11 10 9 36 36 H 1.08994 * 114.25978 * 159.76307 * 14 12 11 37 37 H 1.09006 * 113.03695 * 28.90729 * 14 12 11 38 38 H 1.08997 * 109.47405 * 306.56706 * 18 16 15 39 39 H 1.08998 * 109.46874 * 66.56093 * 18 16 15 40 40 H 1.09004 * 110.77781 * 212.96392 * 20 19 18 41 41 H 1.08995 * 110.78054 * 336.39115 * 20 19 18 42 42 H 1.08994 * 110.75117 * 143.92589 * 21 20 19 43 43 H 1.09003 * 110.74391 * 267.08505 * 21 20 19 44 44 H 1.08001 * 119.96294 * 0.26052 * 23 22 21 45 45 H 1.08001 * 120.05860 * 179.97438 * 24 23 22 46 46 H 1.07991 * 119.87131 * 179.87291 * 25 24 23 47 47 H 1.08004 * 119.89725 * 180.02562 * 26 25 24 48 48 H 1.09000 * 108.78778 * 260.87847 * 30 9 7 49 49 H 1.09000 * 108.79121 * 19.20957 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1040 1.6962 -1.2124 7 6 2.0102 -1.2022 -0.0057 8 1 3.0586 -1.2217 0.2526 9 7 1.3654 -2.3634 -0.3388 10 6 1.8883 -3.6472 0.1364 11 6 2.1682 -4.5215 -1.0995 12 6 0.8549 -4.7152 -1.8616 13 1 0.2277 -5.5217 -1.4818 14 6 1.0859 -4.7430 -3.3717 15 7 1.0042 -3.2728 -3.3417 16 6 1.5177 -2.2496 -4.0529 17 8 1.2413 -1.1064 -3.7571 18 6 2.4355 -2.5261 -5.2158 19 7 2.9801 -1.2591 -5.7219 20 6 4.0478 -0.7492 -4.8345 21 6 5.3313 -1.2938 -5.5023 22 6 4.9132 -1.4585 -6.9499 23 6 5.6522 -1.6220 -8.1029 24 6 5.0140 -1.7464 -9.3235 25 6 3.6329 -1.7062 -9.3863 26 6 2.8893 -1.5456 -8.2360 27 6 3.5250 -1.4226 -7.0015 28 6 0.1125 -3.4249 -2.1897 29 1 -0.9128 -3.6224 -2.5028 30 6 0.1683 -2.3131 -1.1679 31 1 -0.4850 0.8401 0.0039 32 1 2.8223 -3.4870 0.6750 33 1 1.1597 -4.1197 0.7953 34 1 2.5436 -5.4899 -0.7690 35 1 2.9022 -4.0502 -1.7531 36 1 0.2821 -5.2121 -3.9391 37 1 2.0719 -5.1185 -3.6456 38 1 3.2532 -3.1682 -4.8887 39 1 1.8774 -3.0242 -6.0086 40 1 4.0516 0.3408 -4.8211 41 1 3.9367 -1.1489 -3.8266 42 1 6.1465 -0.5755 -5.4153 43 1 5.6154 -2.2524 -5.0681 44 1 6.7306 -1.6525 -8.0525 45 1 5.5931 -1.8740 -10.2262 46 1 3.1349 -1.8013 -10.3398 47 1 1.8111 -1.5154 -8.2918 48 1 -0.7081 -2.3841 -0.5237 49 1 0.1429 -1.3568 -1.6902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084839679.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:49 Heat of formation + Delta-G solvation = 70.174741 kcal Electronic energy + Delta-G solvation = -31060.652093 eV Core-core repulsion = 27182.615848 eV Total energy + Delta-G solvation = -3878.036245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.16621 -41.61742 -39.18277 -37.49765 -37.03683 -33.95995 -33.46928 -31.92742 -31.50491 -30.32639 -29.86348 -28.67130 -27.33022 -25.64504 -24.40239 -24.01886 -22.61275 -22.24434 -22.12685 -21.01313 -19.47919 -18.52781 -17.88799 -17.46989 -17.40697 -17.07899 -16.78915 -16.27605 -16.15521 -15.95318 -15.67770 -15.25282 -14.86415 -14.68221 -14.63759 -14.50050 -14.22437 -13.97702 -13.87840 -13.63672 -13.45757 -13.29954 -13.17102 -12.96528 -12.77742 -12.65279 -12.48147 -12.31945 -12.25058 -12.22724 -12.00204 -11.82159 -11.73244 -11.49377 -11.14018 -10.78240 -10.53975 -10.13863 -9.75101 -9.48123 -8.89436 -8.67897 -7.85367 -5.26528 0.33215 0.43915 1.32952 1.42110 1.44061 1.81570 1.86851 2.48023 2.63729 2.79412 3.30966 3.45459 3.49669 3.63315 3.68859 3.73467 3.88046 3.97980 4.04289 4.12353 4.15535 4.26469 4.27287 4.47657 4.48743 4.49785 4.55172 4.61242 4.65768 4.67540 4.69607 4.77164 4.83820 4.88059 4.90423 4.94926 5.06782 5.11278 5.13757 5.32793 5.37198 5.43422 5.49388 5.56231 5.58878 5.70504 5.77480 5.84200 5.86956 6.28094 6.39443 7.00736 7.19776 7.41770 7.97780 8.35591 9.19021 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.003993 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.086008 B = 7010.525566 C = 8262.678822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.042 4.042 3 Si 0.951 3.049 4 H -0.297 1.297 5 H -0.266 1.266 6 H -0.293 1.293 7 C -0.255 4.255 8 H 0.061 0.939 9 N -0.601 5.601 10 C 0.138 3.862 11 C -0.101 4.101 12 C -0.102 4.102 13 H 0.129 0.871 14 C 0.109 3.891 15 N -0.643 5.643 16 C 0.526 3.474 17 O -0.565 6.565 18 C 0.068 3.932 19 N -0.499 5.499 20 C 0.058 3.942 21 C -0.099 4.099 22 C -0.149 4.149 23 C -0.092 4.092 24 C -0.129 4.129 25 C -0.102 4.102 26 C -0.126 4.126 27 C 0.068 3.932 28 C 0.105 3.895 29 H 0.088 0.912 30 C 0.182 3.818 31 H 0.242 0.758 32 H 0.048 0.952 33 H 0.031 0.969 34 H 0.098 0.902 35 H 0.044 0.956 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.143 0.857 45 H 0.156 0.844 46 H 0.153 0.847 47 H 0.121 0.879 48 H -0.009 1.009 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.754 -15.204 -18.204 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.237 4.237 3 Si 0.780 3.220 4 H -0.223 1.223 5 H -0.191 1.191 6 H -0.220 1.220 7 C -0.385 4.385 8 H 0.078 0.922 9 N -0.325 5.325 10 C 0.013 3.987 11 C -0.140 4.140 12 C -0.121 4.121 13 H 0.146 0.854 14 C -0.012 4.012 15 N -0.380 5.380 16 C 0.315 3.685 17 O -0.442 6.442 18 C -0.060 4.060 19 N -0.216 5.216 20 C -0.069 4.069 21 C -0.137 4.137 22 C -0.151 4.151 23 C -0.110 4.110 24 C -0.147 4.147 25 C -0.120 4.120 26 C -0.146 4.146 27 C -0.028 4.028 28 C 0.001 3.999 29 H 0.106 0.894 30 C 0.056 3.944 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.116 0.884 35 H 0.063 0.937 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.160 0.840 45 H 0.174 0.826 46 H 0.171 0.829 47 H 0.139 0.861 48 H 0.009 0.991 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.136 -13.926 -18.112 24.606 hybrid contribution 0.247 1.421 0.644 1.579 sum 9.382 -12.505 -17.468 23.443 Atomic orbital electron populations 1.70172 1.06458 1.25034 1.56194 1.25515 0.95844 1.00814 1.01519 0.85585 0.77910 0.80653 0.77844 1.22341 1.19145 1.21986 1.19333 0.92212 0.86498 1.40498 0.92165 1.43702 1.30283 1.02102 1.56395 1.21160 0.96803 0.86002 0.94726 1.21832 0.95237 1.00158 0.96726 1.22589 0.97738 0.95897 0.95858 0.85368 1.23316 1.04122 0.78009 0.95747 1.49764 1.48537 1.07940 1.31770 1.20529 0.81512 0.83562 0.82933 1.90773 1.61530 1.22930 1.68966 1.21855 0.97866 0.90440 0.95886 1.59509 1.34401 1.26650 1.01066 1.22957 0.88280 1.00364 0.95318 1.21635 0.98110 1.02876 0.91090 1.21163 0.94246 1.03760 0.95965 1.20718 1.00654 0.98913 0.90728 1.21452 0.94656 1.00528 0.98080 1.21257 0.94416 0.98411 0.97910 1.20726 1.00475 1.03184 0.90209 1.19775 0.92783 1.00121 0.90127 1.22694 0.94631 0.96487 0.86128 0.89444 1.19759 0.87374 0.97021 0.90278 0.94850 0.93291 0.95111 0.88356 0.93748 0.86762 0.88647 0.90046 0.86299 0.91315 0.91987 0.88195 0.88941 0.83970 0.82636 0.82894 0.86065 0.99149 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.84 10.97 21.65 0.24 -60.61 16 2 C -0.04 -2.58 4.91 84.86 0.42 -2.16 16 3 Si 0.95 50.91 29.58 68.60 2.03 52.94 16 4 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 5 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.29 -15.95 7.11 99.48 0.71 -15.24 16 7 C -0.25 -15.17 9.54 84.03 0.80 -14.37 16 8 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 9 N -0.60 -31.54 3.01 -705.64 -2.12 -33.66 16 10 C 0.14 5.53 6.49 86.69 0.56 6.09 16 11 C -0.10 -2.94 5.72 30.94 0.18 -2.76 16 12 C -0.10 -2.64 4.47 -11.02 -0.05 -2.69 16 13 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 14 C 0.11 2.31 7.76 80.65 0.63 2.93 16 15 N -0.64 -22.35 3.27 -877.38 -2.87 -25.22 16 16 C 0.53 21.28 7.48 87.66 0.66 21.93 16 17 O -0.56 -30.56 15.30 -3.01 -0.05 -30.61 16 18 C 0.07 2.07 5.09 85.56 0.44 2.50 16 19 N -0.50 -16.85 4.58 -693.00 -3.17 -20.02 16 20 C 0.06 1.97 6.39 86.65 0.55 2.52 16 21 C -0.10 -2.41 6.93 30.67 0.21 -2.20 16 22 C -0.15 -3.55 6.23 -19.49 -0.12 -3.68 16 23 C -0.09 -1.66 10.03 22.21 0.22 -1.43 16 24 C -0.13 -1.95 10.06 22.30 0.22 -1.73 16 25 C -0.10 -1.71 10.02 22.21 0.22 -1.49 16 26 C -0.13 -2.92 10.04 22.47 0.23 -2.69 16 27 C 0.07 1.87 5.49 38.29 0.21 2.08 16 28 C 0.11 3.94 4.09 38.68 0.16 4.10 16 29 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 30 C 0.18 9.52 4.60 85.91 0.40 9.91 16 31 H 0.24 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.05 1.96 7.86 -2.39 -0.02 1.94 16 33 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 1.46 7.64 -2.39 -0.02 1.44 16 36 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 1.59 8.01 -2.38 -0.02 1.57 16 38 H 0.08 2.14 7.94 -2.39 -0.02 2.12 16 39 H 0.12 3.00 7.94 -2.39 -0.02 2.98 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.06 2.42 7.36 -2.39 -0.02 2.40 16 42 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 46 H 0.15 1.66 8.06 -2.92 -0.02 1.63 16 47 H 0.12 2.74 8.06 -2.91 -0.02 2.72 16 48 H -0.01 -0.53 8.01 -2.39 -0.02 -0.55 16 49 H 0.05 3.20 4.92 -2.39 -0.01 3.19 16 Total: -1.00 -86.44 386.57 0.92 -85.52 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.94 Total: 14.76 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 5.93 Total: 16.89 kcal Atomic # 7 Polarization: -131.58 SS G_CDS: -7.93 Total: -139.51 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.05 Total: -30.61 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.03 Total: 52.94 kcal Total: -86.44 0.92 -85.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084839679.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.697 kcal (2) G-P(sol) polarization free energy of solvation -86.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds