Wall clock time and date at job start Wed Apr 1 2020 00:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99752 * 2 1 4 4 H 1.48500 * 109.47334 * 269.99609 * 3 2 1 5 5 H 1.48504 * 109.47596 * 29.99870 * 3 2 1 6 6 H 1.48508 * 109.47223 * 149.99791 * 3 2 1 7 7 C 1.38809 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00229 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.47440 * 126.05730 * 359.97438 * 9 7 2 11 11 C 1.54502 * 107.14790 * 181.64308 * 10 9 7 12 12 C 1.56035 * 102.61281 * 22.85205 * 11 10 9 13 13 H 1.08994 * 112.85768 * 202.21737 * 12 11 10 14 14 C 1.53096 * 106.38796 * 78.38354 * 12 11 10 15 15 C 1.52835 * 110.58354 * 195.45129 * 14 12 11 16 16 N 1.47156 * 107.97900 * 57.33822 * 15 14 12 17 17 C 1.34775 * 121.21530 * 122.70604 * 16 15 14 18 18 O 1.21284 * 119.99878 * 180.02562 * 17 16 15 19 19 C 1.50697 * 120.00298 * 359.97438 * 17 16 15 20 20 H 1.08997 * 110.26488 * 302.05745 * 19 17 16 21 21 C 1.54331 * 110.29626 * 180.02562 * 19 17 16 22 22 C 1.54373 * 102.39557 * 267.40333 * 21 19 17 23 23 C 1.51220 * 105.11480 * 333.71117 * 22 21 19 24 24 C 1.38748 * 130.69723 * 197.15789 * 23 22 21 25 25 C 1.38567 * 118.56175 * 179.97438 * 24 23 22 26 26 C 1.38235 * 118.99195 * 359.97438 * 25 24 23 27 27 N 1.31683 * 120.79793 * 0.02562 * 26 25 24 28 28 C 1.32303 * 122.03234 * 0.02562 * 27 26 25 29 29 C 1.46754 * 117.56221 * 302.97394 * 16 15 14 30 30 C 1.48360 * 125.78091 * 180.16416 * 9 7 2 31 31 H 1.08998 * 108.31738 * 269.57406 * 30 9 7 32 32 H 0.97001 * 119.99669 * 0.02562 * 1 2 3 33 33 H 1.09002 * 109.90113 * 62.26854 * 10 9 7 34 34 H 1.09002 * 109.90255 * 301.02763 * 10 9 7 35 35 H 1.08997 * 110.78057 * 264.57623 * 11 10 9 36 36 H 1.09000 * 110.78042 * 141.12838 * 11 10 9 37 37 H 1.09000 * 109.25051 * 75.16589 * 14 12 11 38 38 H 1.09000 * 109.22609 * 315.71448 * 14 12 11 39 39 H 1.09007 * 109.75672 * 297.72387 * 15 14 12 40 40 H 1.08996 * 109.76396 * 176.96645 * 15 14 12 41 41 H 1.09003 * 110.82390 * 149.18017 * 21 19 17 42 42 H 1.09004 * 110.99286 * 25.70661 * 21 19 17 43 43 H 1.08991 * 110.31803 * 214.80033 * 22 21 19 44 44 H 1.08999 * 110.30853 * 92.61609 * 22 21 19 45 45 H 1.08006 * 120.71532 * 359.95216 * 24 23 22 46 46 H 1.08003 * 120.50822 * 180.02562 * 25 24 23 47 47 H 1.07999 * 119.60010 * 179.73192 * 26 25 24 48 48 H 1.09002 * 109.22739 * 172.59073 * 29 16 15 49 49 H 1.08997 * 109.23138 * 291.95536 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1405 -2.5437 0.0028 11 6 -0.4377 -4.0592 0.0460 12 6 0.8724 -4.6460 0.6576 13 1 1.0155 -5.7001 0.4200 14 6 0.7977 -4.3903 2.1652 15 6 2.1714 -4.5727 2.8099 16 7 3.1106 -3.6556 2.1449 17 6 3.8029 -2.7358 2.8457 18 8 4.5710 -1.9906 2.2750 19 6 3.6217 -2.6323 4.3381 20 1 2.5761 -2.4410 4.5792 21 6 4.5159 -1.5117 4.9095 22 6 5.7985 -2.2774 5.2991 23 6 5.3458 -3.6956 5.5646 24 6 5.9732 -4.7347 6.2367 25 6 5.3187 -5.9523 6.3329 26 6 4.0686 -6.0882 5.7587 27 7 3.5031 -5.0799 5.1281 28 6 4.0957 -3.9025 5.0138 29 6 3.2614 -3.7753 0.6901 30 6 1.9343 -3.7410 0.0057 31 1 2.0700 -4.0588 -1.0281 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5605 -2.1090 -0.9043 34 1 -0.5646 -2.0571 0.8812 35 1 -0.6043 -4.4494 -0.9580 36 1 -1.2921 -4.2676 0.6900 37 1 0.0939 -5.0912 2.6141 38 1 0.4512 -3.3717 2.3397 39 1 2.5061 -5.6018 2.6789 40 1 2.1144 -4.3355 3.8722 41 1 4.0547 -1.0571 5.7864 42 1 4.7297 -0.7580 4.1516 43 1 6.2385 -1.8461 6.1981 44 1 6.5156 -2.2565 4.4784 45 1 6.9508 -4.5976 6.6750 46 1 5.7779 -6.7823 6.8493 47 1 3.5515 -7.0341 5.8241 48 1 3.8804 -2.9559 0.3247 49 1 3.7468 -4.7228 0.4562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085018991.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:21 Heat of formation + Delta-G solvation = 45.206167 kcal Electronic energy + Delta-G solvation = -31893.930500 eV Core-core repulsion = 28014.811537 eV Total energy + Delta-G solvation = -3879.118963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21440 -39.56727 -38.09560 -35.85549 -34.84399 -32.89226 -32.71800 -31.07111 -29.57791 -29.34068 -28.25655 -27.86577 -24.57773 -23.96528 -23.55433 -22.41617 -22.09991 -21.42158 -19.87894 -19.26091 -18.12376 -17.22289 -16.84798 -16.42473 -16.06098 -15.65025 -15.08667 -14.82131 -14.55648 -14.36343 -14.07956 -13.83218 -13.52331 -13.49239 -13.33343 -13.13486 -12.81392 -12.58965 -12.35606 -11.98124 -11.87457 -11.83318 -11.49791 -11.35222 -11.16734 -11.13762 -10.95384 -10.75465 -10.67928 -10.61122 -10.02740 -9.96231 -9.78360 -9.74337 -9.59689 -9.44587 -9.42763 -9.23227 -8.66505 -8.46084 -7.97742 -6.69189 -5.56561 -2.87777 0.93556 1.13252 3.06488 3.46328 3.50985 3.56304 3.63143 3.69168 3.94991 4.32897 4.62918 4.63978 4.76345 4.79915 4.89147 5.05200 5.10871 5.21388 5.32940 5.36513 5.43929 5.46213 5.63761 5.67408 5.69684 5.71915 5.77317 5.85138 5.94237 5.95901 6.00683 6.05599 6.09490 6.12230 6.22454 6.28540 6.31721 6.37826 6.39824 6.53022 6.58448 6.61511 6.70215 6.85169 7.06739 7.21344 7.69834 7.71043 7.84370 7.97573 8.02933 8.36483 8.74251 9.36914 9.96239 10.62398 11.55797 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.004729 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.117988 B = 5920.044310 C = 7455.938872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.901 3.099 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.209 4.209 8 H 0.081 0.919 9 N -0.592 5.592 10 C 0.181 3.819 11 C -0.143 4.143 12 C -0.099 4.099 13 H 0.072 0.928 14 C -0.124 4.124 15 C 0.109 3.891 16 N -0.586 5.586 17 C 0.536 3.464 18 O -0.533 6.533 19 C -0.061 4.061 20 H 0.113 0.887 21 C -0.106 4.106 22 C -0.079 4.079 23 C -0.137 4.137 24 C -0.067 4.067 25 C -0.173 4.173 26 C 0.099 3.901 27 N -0.469 5.469 28 C 0.129 3.871 29 C 0.117 3.883 30 C 0.148 3.852 31 H 0.029 0.971 32 H 0.248 0.752 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.131 0.869 46 H 0.135 0.865 47 H 0.158 0.842 48 H 0.095 0.905 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.743 -13.519 13.594 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.733 3.267 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.337 4.337 8 H 0.099 0.901 9 N -0.318 5.318 10 C 0.057 3.943 11 C -0.182 4.182 12 C -0.119 4.119 13 H 0.090 0.910 14 C -0.162 4.162 15 C -0.014 4.014 16 N -0.317 5.317 17 C 0.322 3.678 18 O -0.410 6.410 19 C -0.083 4.083 20 H 0.131 0.869 21 C -0.144 4.144 22 C -0.116 4.116 23 C -0.139 4.139 24 C -0.093 4.093 25 C -0.193 4.193 26 C -0.058 4.058 27 N -0.177 5.177 28 C -0.008 4.008 29 C -0.006 4.006 30 C 0.041 3.959 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.123 0.877 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.149 0.851 46 H 0.153 0.847 47 H 0.175 0.825 48 H 0.113 0.887 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.284 -12.994 12.912 19.713 hybrid contribution 1.007 0.763 0.342 1.309 sum 8.291 -12.231 13.254 19.849 Atomic orbital electron populations 1.69965 1.04761 1.24581 1.58291 1.24678 0.95553 0.97310 1.02964 0.86233 0.79082 0.83933 0.77493 1.21921 1.21986 1.20289 1.19061 0.90608 0.82080 1.41983 0.90134 1.44789 1.01196 0.99072 1.86762 1.21175 0.84287 0.88222 1.00647 1.23160 0.96111 0.99796 0.99099 1.22313 0.96852 0.97514 0.95177 0.90986 1.21868 0.96317 1.02983 0.95018 1.21996 0.88593 0.92540 0.98255 1.47757 1.41981 1.34370 1.07642 1.19711 0.80534 0.79820 0.87734 1.90664 1.37711 1.41926 1.70697 1.20800 1.03078 0.91357 0.93030 0.86869 1.22277 0.93616 0.96845 1.01624 1.21011 0.98860 0.89697 1.02030 1.21536 0.96426 0.97482 0.98475 1.21058 0.99677 0.91913 0.96664 1.22054 0.97039 0.98089 1.02132 1.22663 0.92731 0.97042 0.93353 1.66947 1.36356 0.99348 1.15076 1.21432 0.92042 0.92411 0.94915 1.20952 0.98809 1.01267 0.79594 1.20710 0.91369 0.87944 0.95880 0.95355 0.94164 0.94268 0.93780 0.92888 0.92320 0.92230 0.90385 0.92392 0.87812 0.90202 0.87738 0.90273 0.89296 0.85081 0.84704 0.82516 0.88672 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 10.38 55.49 0.58 -27.24 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.90 23.43 29.55 -169.99 -5.02 18.41 16 4 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 5 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.21 -5.91 9.69 -15.06 -0.15 -6.06 16 8 H 0.08 2.34 6.49 -52.49 -0.34 2.00 16 9 N -0.59 -14.95 3.23 -164.02 -0.53 -15.48 16 10 C 0.18 4.41 4.62 -2.74 -0.01 4.40 16 11 C -0.14 -2.68 6.34 -24.32 -0.15 -2.84 16 12 C -0.10 -1.72 3.65 -88.43 -0.32 -2.05 16 13 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 14 C -0.12 -2.07 5.04 -26.77 -0.14 -2.20 16 15 C 0.11 1.73 5.01 -3.77 -0.02 1.71 16 16 N -0.59 -10.92 2.98 -175.19 -0.52 -11.44 16 17 C 0.54 10.38 7.10 -10.99 -0.08 10.30 16 18 O -0.53 -12.04 14.93 5.55 0.08 -11.96 16 19 C -0.06 -0.94 2.37 -91.84 -0.22 -1.16 16 20 H 0.11 1.74 7.71 -51.93 -0.40 1.34 16 21 C -0.11 -1.43 6.37 -25.31 -0.16 -1.59 16 22 C -0.08 -0.91 6.76 -26.91 -0.18 -1.09 16 23 C -0.14 -1.67 6.16 -104.20 -0.64 -2.31 16 24 C -0.07 -0.66 10.17 -39.27 -0.40 -1.06 16 25 C -0.17 -1.51 10.12 -39.46 -0.40 -1.91 16 26 C 0.10 1.00 11.18 -17.62 -0.20 0.80 16 27 N -0.47 -6.08 7.45 -9.18 -0.07 -6.14 16 28 C 0.13 1.79 5.94 -82.03 -0.49 1.30 16 29 C 0.12 2.30 5.59 -5.70 -0.03 2.27 16 30 C 0.15 3.06 3.02 -68.18 -0.21 2.86 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 34 H 0.04 1.19 7.04 -51.93 -0.37 0.83 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.00 7.97 -51.93 -0.41 0.58 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.58 6.85 -51.93 -0.36 1.23 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.10 1.59 4.02 -51.93 -0.21 1.38 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.10 1.64 6.99 -51.93 -0.36 1.27 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 46 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 47 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 48 H 0.10 2.16 5.50 -51.93 -0.29 1.87 16 49 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -33.57 370.34 -11.12 -44.69 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.34 Total: 2.59 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -3.89 Total: 0.99 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.54 Total: -60.30 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.41 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.57 -11.12 -44.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085018991.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.896 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds