Wall clock time and date at job start Wed Apr 1 2020 00:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99623 * 2 1 4 4 H 1.48499 * 109.46831 * 269.99304 * 3 2 1 5 5 H 1.48496 * 109.47194 * 29.99495 * 3 2 1 6 6 H 1.48497 * 109.47002 * 149.99676 * 3 2 1 7 7 C 1.38806 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00152 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.47424 * 126.05845 * 359.97438 * 9 7 2 11 11 C 1.54503 * 107.15059 * 181.61682 * 10 9 7 12 12 C 1.56034 * 102.60864 * 22.85381 * 11 10 9 13 13 H 1.08998 * 112.86124 * 202.92288 * 12 11 10 14 14 C 1.53097 * 107.06075 * 78.60431 * 12 11 10 15 15 C 1.51357 * 111.38059 * 195.95270 * 14 12 11 16 16 N 1.47153 * 108.20216 * 56.63462 * 15 14 12 17 17 C 1.34779 * 121.21925 * 123.39940 * 16 15 14 18 18 O 1.21281 * 119.99663 * 179.71802 * 17 16 15 19 19 C 1.50697 * 119.99896 * 359.72070 * 17 16 15 20 20 H 1.09003 * 110.72622 * 298.04408 * 19 17 16 21 21 C 1.54376 * 110.82177 * 174.42262 * 19 17 16 22 22 C 1.51219 * 105.11789 * 215.48536 * 21 19 17 23 23 C 1.38742 * 130.69546 * 197.14645 * 22 21 19 24 24 C 1.38571 * 118.56171 * 179.97438 * 23 22 21 25 25 C 1.38232 * 118.98686 * 359.97438 * 24 23 22 26 26 N 1.31682 * 120.80502 * 359.97438 * 25 24 23 27 27 C 1.32309 * 122.02873 * 0.02901 * 26 25 24 28 28 C 1.51470 * 130.13992 * 179.97438 * 27 26 25 29 29 C 1.46766 * 117.56325 * 303.12725 * 16 15 14 30 30 C 1.46465 * 126.06047 * 180.02562 * 9 7 2 31 31 H 1.09001 * 107.86010 * 269.63682 * 30 9 7 32 32 H 0.97001 * 120.00261 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.90346 * 62.23657 * 10 9 7 34 34 H 1.09004 * 110.05760 * 301.08139 * 10 9 7 35 35 H 1.09008 * 110.78275 * 264.57828 * 11 10 9 36 36 H 1.09002 * 110.78582 * 141.13455 * 11 10 9 37 37 H 1.08997 * 109.25546 * 315.38013 * 14 12 11 38 38 H 1.08993 * 109.25358 * 74.85939 * 14 12 11 39 39 H 1.09003 * 109.30998 * 297.14609 * 15 14 12 40 40 H 1.09005 * 109.99828 * 176.52128 * 15 14 12 41 41 H 1.09001 * 110.31204 * 334.39544 * 21 19 17 42 42 H 1.08994 * 110.31006 * 96.57499 * 21 19 17 43 43 H 1.07997 * 120.71782 * 0.02562 * 23 22 21 44 44 H 1.07998 * 120.51204 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.59546 * 180.02562 * 25 24 23 46 46 H 1.09007 * 110.29723 * 43.87854 * 28 27 26 47 47 H 1.09000 * 110.37584 * 281.79147 * 28 27 26 48 48 H 1.09003 * 109.22633 * 172.84954 * 29 16 15 49 49 H 1.08996 * 109.22923 * 292.25560 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1403 -2.5437 0.0005 11 6 -0.4375 -4.0593 0.0422 12 6 0.8721 -4.6466 0.6542 13 1 1.0217 -5.6972 0.4056 14 6 0.8097 -4.4051 2.1647 15 6 2.1695 -4.5751 2.8074 16 7 3.1094 -3.6577 2.1438 17 6 3.8056 -2.7422 2.8465 18 8 4.5783 -2.0004 2.2776 19 6 3.6238 -2.6402 4.3390 20 1 2.5957 -2.3745 4.5851 21 6 4.6174 -1.6258 4.9447 22 6 4.9929 -2.1985 6.2930 23 6 5.5843 -1.6010 7.3967 24 6 5.8186 -2.3743 8.5225 25 6 5.4559 -3.7081 8.5064 26 7 4.8955 -4.2418 7.4410 27 6 4.6553 -3.5372 6.3472 28 6 4.0287 -3.9566 5.0335 29 6 3.2656 -3.7802 0.6897 30 6 1.9201 -3.7267 0.0016 31 1 2.0505 -4.0353 -1.0356 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5598 -2.1082 -0.9064 34 1 -0.5679 -2.0576 0.8775 35 1 -0.6034 -4.4487 -0.9624 36 1 -1.2925 -4.2683 0.6852 37 1 0.4703 -3.3864 2.3521 38 1 0.1056 -5.1066 2.6120 39 1 2.5042 -5.6041 2.6759 40 1 2.1118 -4.3384 3.8699 41 1 5.5005 -1.5371 4.3120 42 1 4.1389 -0.6541 5.0664 43 1 5.8553 -0.5558 7.3792 44 1 6.2776 -1.9416 9.3991 45 1 5.6337 -4.3197 9.3786 46 1 3.1498 -4.5756 5.2144 47 1 4.7522 -4.4975 4.4235 48 1 3.8882 -2.9630 0.3254 49 1 3.7488 -4.7297 0.4593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085082115.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:01 Heat of formation + Delta-G solvation = 37.260586 kcal Electronic energy + Delta-G solvation = -31138.150281 eV Core-core repulsion = 27258.686772 eV Total energy + Delta-G solvation = -3879.463510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.07457 -39.88247 -38.24356 -35.89716 -35.06157 -32.85585 -32.75484 -31.27900 -30.08877 -28.79794 -28.42053 -27.85891 -24.99610 -24.48180 -23.28982 -22.57299 -21.92920 -21.40461 -19.98296 -19.38510 -18.26183 -17.10185 -16.73656 -16.58531 -16.48321 -15.67980 -15.06223 -14.86679 -14.75282 -14.43559 -14.10689 -13.96575 -13.58187 -13.55908 -13.27139 -13.11184 -12.94206 -12.74933 -12.61535 -12.23392 -11.99636 -11.89488 -11.55203 -11.41543 -11.32818 -11.27660 -11.17535 -10.87057 -10.77082 -10.67942 -10.08722 -9.88768 -9.84667 -9.79602 -9.63956 -9.49047 -9.44916 -9.28346 -8.82388 -8.51804 -8.12269 -6.74973 -5.62931 -2.94753 0.93969 1.13322 3.03309 3.38124 3.47163 3.52765 3.59576 3.60971 3.80065 4.31406 4.56195 4.59166 4.71130 4.78883 4.81807 4.99683 5.04081 5.11311 5.12258 5.26941 5.36735 5.43352 5.51295 5.52514 5.60789 5.63829 5.67000 5.72938 5.74945 5.83917 5.92318 5.97592 5.99342 6.04468 6.12161 6.14922 6.16280 6.27676 6.31299 6.44814 6.49775 6.54660 6.63866 6.75609 6.94413 7.09811 7.63706 7.65922 7.83517 7.88686 7.92648 8.31697 8.65125 9.30801 9.91715 10.56217 11.49355 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012640 B = 0.003898 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.586025 B = 7180.973598 C = 8644.762451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.902 3.098 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.212 4.212 8 H 0.082 0.918 9 N -0.589 5.589 10 C 0.179 3.821 11 C -0.143 4.143 12 C -0.099 4.099 13 H 0.074 0.926 14 C -0.125 4.125 15 C 0.106 3.894 16 N -0.591 5.591 17 C 0.533 3.467 18 O -0.531 6.531 19 C -0.106 4.106 20 H 0.110 0.890 21 C -0.065 4.065 22 C -0.139 4.139 23 C -0.066 4.066 24 C -0.175 4.175 25 C 0.097 3.903 26 N -0.479 5.479 27 C 0.119 3.881 28 C -0.060 4.060 29 C 0.114 3.886 30 C 0.153 3.847 31 H 0.026 0.974 32 H 0.249 0.751 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.156 0.844 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.235 -10.729 13.755 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.340 4.340 8 H 0.099 0.901 9 N -0.314 5.314 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.119 4.119 13 H 0.093 0.907 14 C -0.163 4.163 15 C -0.017 4.017 16 N -0.323 5.323 17 C 0.320 3.680 18 O -0.408 6.408 19 C -0.128 4.128 20 H 0.129 0.871 21 C -0.103 4.103 22 C -0.140 4.140 23 C -0.091 4.091 24 C -0.195 4.195 25 C -0.061 4.061 26 N -0.188 5.188 27 C -0.019 4.019 28 C -0.098 4.098 29 C -0.009 4.009 30 C 0.044 3.956 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.173 0.827 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.379 -10.951 13.460 18.487 hybrid contribution 0.446 1.874 0.105 1.929 sum 6.825 -9.077 13.564 17.691 Atomic orbital electron populations 1.69959 1.04786 1.24699 1.58004 1.24689 0.95547 0.97396 1.02705 0.86234 0.79097 0.83862 0.77555 1.21817 1.21966 1.20272 1.19046 0.90593 0.82020 1.42382 0.90058 1.44296 1.01374 0.99268 1.86487 1.21198 0.84350 0.88251 1.00784 1.23155 0.96079 0.99731 0.99212 1.22321 0.97181 0.97750 0.94667 0.90735 1.21553 0.95915 1.03390 0.95468 1.21566 0.89982 0.93122 0.97056 1.47747 1.41816 1.34811 1.07939 1.19860 0.80365 0.79654 0.88126 1.90687 1.37358 1.41648 1.71075 1.21931 1.02027 0.95918 0.92931 0.87150 1.20870 1.00055 0.98400 0.90944 1.21560 0.99286 0.96544 0.96660 1.21095 0.95901 1.00445 0.91696 1.22055 1.02489 0.95724 0.99208 1.22595 0.94706 0.93039 0.95739 1.66838 1.12560 1.39951 0.99456 1.21791 0.95667 0.90763 0.93647 1.21072 1.01220 0.97019 0.90484 1.21398 0.98954 1.01451 0.79146 1.20703 0.91156 0.87880 0.95813 0.95659 0.94091 0.94189 0.93769 0.92732 0.92314 0.90275 0.91917 0.91811 0.89944 0.87891 0.89619 0.84895 0.84656 0.82692 0.88700 0.88821 0.88663 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.25 10.38 55.49 0.58 -26.68 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.90 23.11 29.55 -169.99 -5.02 18.08 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 6 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.21 -5.85 9.70 -15.06 -0.15 -5.99 16 8 H 0.08 2.30 6.51 -52.48 -0.34 1.96 16 9 N -0.59 -14.28 3.21 -164.47 -0.53 -14.81 16 10 C 0.18 4.19 4.63 -2.75 -0.01 4.17 16 11 C -0.14 -2.53 6.35 -24.32 -0.15 -2.69 16 12 C -0.10 -1.58 3.66 -88.45 -0.32 -1.90 16 13 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.13 -1.83 4.98 -27.51 -0.14 -1.96 16 15 C 0.11 1.36 5.71 -4.51 -0.03 1.34 16 16 N -0.59 -9.74 2.97 -174.99 -0.52 -10.26 16 17 C 0.53 9.43 7.02 -10.99 -0.08 9.35 16 18 O -0.53 -11.52 15.02 5.56 0.08 -11.44 16 19 C -0.11 -1.48 2.53 -90.40 -0.23 -1.71 16 20 H 0.11 1.49 7.90 -51.93 -0.41 1.08 16 21 C -0.06 -0.89 6.06 -26.91 -0.16 -1.05 16 22 C -0.14 -1.73 6.16 -104.21 -0.64 -2.37 16 23 C -0.07 -0.69 10.17 -39.27 -0.40 -1.09 16 24 C -0.17 -1.59 10.12 -39.46 -0.40 -1.99 16 25 C 0.10 0.98 11.18 -17.62 -0.20 0.78 16 26 N -0.48 -6.12 10.35 -9.19 -0.10 -6.21 16 27 C 0.12 1.52 7.32 -82.03 -0.60 0.92 16 28 C -0.06 -0.71 5.13 -26.85 -0.14 -0.84 16 29 C 0.11 2.05 5.68 -4.79 -0.03 2.02 16 30 C 0.15 2.96 2.96 -68.35 -0.20 2.76 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.04 1.06 7.57 -51.93 -0.39 0.67 16 34 H 0.04 1.15 7.10 -51.93 -0.37 0.79 16 35 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 36 H 0.06 0.94 7.99 -51.93 -0.41 0.52 16 37 H 0.08 1.46 6.96 -51.93 -0.36 1.10 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.92 4.25 -51.93 -0.22 0.70 16 41 H 0.10 1.55 7.07 -51.93 -0.37 1.18 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.09 0.96 6.49 -51.92 -0.34 0.62 16 47 H 0.09 1.11 7.88 -51.93 -0.41 0.70 16 48 H 0.10 2.03 5.54 -51.93 -0.29 1.74 16 49 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 372.38 15.07 5.61 5.61 Total: -1.00 -33.51 372.38 -11.14 -44.64 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.27 Total: 1.63 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -3.97 Total: -0.57 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.57 Total: -57.96 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.51 -11.14 -44.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085082115.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.905 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds