Wall clock time and date at job start Wed Apr 1 2020 00:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99623 * 2 1 4 4 H 1.48499 * 109.46831 * 269.99304 * 3 2 1 5 5 H 1.48496 * 109.47194 * 29.99495 * 3 2 1 6 6 H 1.48497 * 109.47002 * 149.99676 * 3 2 1 7 7 C 1.38806 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00152 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.47424 * 126.05845 * 359.97438 * 9 7 2 11 11 C 1.54503 * 107.15059 * 181.61682 * 10 9 7 12 12 C 1.56034 * 102.60864 * 22.85381 * 11 10 9 13 13 H 1.08998 * 112.86124 * 202.92288 * 12 11 10 14 14 C 1.53097 * 107.06075 * 78.60431 * 12 11 10 15 15 C 1.51357 * 111.38059 * 195.95270 * 14 12 11 16 16 N 1.47153 * 108.20216 * 56.63462 * 15 14 12 17 17 C 1.34779 * 121.21925 * 123.39940 * 16 15 14 18 18 O 1.21281 * 119.99663 * 179.71802 * 17 16 15 19 19 C 1.50697 * 119.99896 * 359.72070 * 17 16 15 20 20 H 1.09003 * 110.72622 * 298.04408 * 19 17 16 21 21 C 1.54376 * 110.82177 * 174.42262 * 19 17 16 22 22 C 1.51219 * 105.11789 * 215.48536 * 21 19 17 23 23 C 1.38742 * 130.69546 * 197.14645 * 22 21 19 24 24 C 1.38571 * 118.56171 * 179.97438 * 23 22 21 25 25 C 1.38232 * 118.98686 * 359.97438 * 24 23 22 26 26 N 1.31682 * 120.80502 * 359.97438 * 25 24 23 27 27 C 1.32309 * 122.02873 * 0.02901 * 26 25 24 28 28 C 1.51470 * 130.13992 * 179.97438 * 27 26 25 29 29 C 1.46766 * 117.56325 * 303.12725 * 16 15 14 30 30 C 1.46465 * 126.06047 * 180.02562 * 9 7 2 31 31 H 1.09001 * 107.86010 * 269.63682 * 30 9 7 32 32 H 0.97001 * 120.00261 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.90346 * 62.23657 * 10 9 7 34 34 H 1.09004 * 110.05760 * 301.08139 * 10 9 7 35 35 H 1.09008 * 110.78275 * 264.57828 * 11 10 9 36 36 H 1.09002 * 110.78582 * 141.13455 * 11 10 9 37 37 H 1.08997 * 109.25546 * 315.38013 * 14 12 11 38 38 H 1.08993 * 109.25358 * 74.85939 * 14 12 11 39 39 H 1.09003 * 109.30998 * 297.14609 * 15 14 12 40 40 H 1.09005 * 109.99828 * 176.52128 * 15 14 12 41 41 H 1.09001 * 110.31204 * 334.39544 * 21 19 17 42 42 H 1.08994 * 110.31006 * 96.57499 * 21 19 17 43 43 H 1.07997 * 120.71782 * 0.02562 * 23 22 21 44 44 H 1.07998 * 120.51204 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.59546 * 180.02562 * 25 24 23 46 46 H 1.09007 * 110.29723 * 43.87854 * 28 27 26 47 47 H 1.09000 * 110.37584 * 281.79147 * 28 27 26 48 48 H 1.09003 * 109.22633 * 172.84954 * 29 16 15 49 49 H 1.08996 * 109.22923 * 292.25560 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1403 -2.5437 0.0005 11 6 -0.4375 -4.0593 0.0422 12 6 0.8721 -4.6466 0.6542 13 1 1.0217 -5.6972 0.4056 14 6 0.8097 -4.4051 2.1647 15 6 2.1695 -4.5751 2.8074 16 7 3.1094 -3.6577 2.1438 17 6 3.8056 -2.7422 2.8465 18 8 4.5783 -2.0004 2.2776 19 6 3.6238 -2.6402 4.3390 20 1 2.5957 -2.3745 4.5851 21 6 4.6174 -1.6258 4.9447 22 6 4.9929 -2.1985 6.2930 23 6 5.5843 -1.6010 7.3967 24 6 5.8186 -2.3743 8.5225 25 6 5.4559 -3.7081 8.5064 26 7 4.8955 -4.2418 7.4410 27 6 4.6553 -3.5372 6.3472 28 6 4.0287 -3.9566 5.0335 29 6 3.2656 -3.7802 0.6897 30 6 1.9201 -3.7267 0.0016 31 1 2.0505 -4.0353 -1.0356 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5598 -2.1082 -0.9064 34 1 -0.5679 -2.0576 0.8775 35 1 -0.6034 -4.4487 -0.9624 36 1 -1.2925 -4.2683 0.6852 37 1 0.4703 -3.3864 2.3521 38 1 0.1056 -5.1066 2.6120 39 1 2.5042 -5.6041 2.6759 40 1 2.1118 -4.3384 3.8699 41 1 5.5005 -1.5371 4.3120 42 1 4.1389 -0.6541 5.0664 43 1 5.8553 -0.5558 7.3792 44 1 6.2776 -1.9416 9.3991 45 1 5.6337 -4.3197 9.3786 46 1 3.1498 -4.5756 5.2144 47 1 4.7522 -4.4975 4.4235 48 1 3.8882 -2.9630 0.3254 49 1 3.7488 -4.7297 0.4593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085082115.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:00 Heat of formation + Delta-G solvation = 16.543215 kcal Electronic energy + Delta-G solvation = -31139.048654 eV Core-core repulsion = 27258.686772 eV Total energy + Delta-G solvation = -3880.361882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.09360 -41.11389 -39.67230 -36.96489 -36.57429 -34.64396 -33.61798 -32.87371 -31.36702 -30.15010 -29.98179 -28.84263 -26.53235 -26.10958 -24.48031 -23.86753 -22.78823 -22.47132 -21.71963 -20.75013 -19.65482 -18.48894 -18.26267 -17.64220 -17.41091 -17.02838 -16.67881 -16.22894 -15.95738 -15.74310 -15.56949 -15.48622 -14.92771 -14.66478 -14.45755 -14.20933 -14.09332 -13.94600 -13.84131 -13.67624 -13.43632 -13.15781 -13.02644 -12.97091 -12.67582 -12.59425 -12.50195 -12.43162 -12.30651 -12.25180 -12.04609 -11.64510 -11.37003 -11.21810 -11.09003 -10.71837 -10.67467 -10.66109 -10.28765 -9.68704 -9.46835 -8.78710 -7.82802 -5.12463 0.12388 0.31458 1.36391 1.37290 1.48799 1.69160 2.12839 2.48463 2.78325 2.91206 3.31080 3.35953 3.55221 3.62086 3.74467 3.84331 3.91623 3.97176 4.05668 4.09825 4.18525 4.22253 4.34538 4.38371 4.51095 4.52209 4.58171 4.63859 4.65779 4.68167 4.75264 4.78214 4.78370 4.88200 4.93068 4.98510 5.01792 5.07371 5.17509 5.19754 5.21801 5.28830 5.35492 5.55473 5.67729 5.73116 5.74798 5.77720 5.84012 6.24716 6.58726 7.00960 7.16605 7.30233 7.85087 8.48215 9.27823 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012640 B = 0.003898 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.586025 B = 7180.973598 C = 8644.762451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.063 4.063 3 Si 0.952 3.048 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.201 4.201 8 H 0.067 0.933 9 N -0.605 5.605 10 C 0.186 3.814 11 C -0.130 4.130 12 C -0.083 4.083 13 H 0.122 0.878 14 C -0.122 4.122 15 C 0.102 3.898 16 N -0.592 5.592 17 C 0.522 3.478 18 O -0.585 6.585 19 C -0.099 4.099 20 H 0.114 0.886 21 C -0.063 4.063 22 C -0.157 4.157 23 C -0.073 4.073 24 C -0.165 4.165 25 C 0.092 3.908 26 N -0.500 5.500 27 C 0.103 3.897 28 C -0.048 4.048 29 C 0.117 3.883 30 C 0.141 3.859 31 H 0.024 0.976 32 H 0.242 0.758 33 H -0.004 1.004 34 H 0.007 0.993 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.032 0.968 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.149 0.851 44 H 0.172 0.828 45 H 0.188 0.812 46 H 0.118 0.882 47 H 0.093 0.907 48 H 0.051 0.949 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 -14.095 16.314 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.256 4.256 3 Si 0.783 3.217 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.331 4.331 8 H 0.085 0.915 9 N -0.330 5.330 10 C 0.062 3.938 11 C -0.168 4.168 12 C -0.102 4.102 13 H 0.140 0.860 14 C -0.160 4.160 15 C -0.019 4.019 16 N -0.323 5.323 17 C 0.311 3.689 18 O -0.465 6.465 19 C -0.121 4.121 20 H 0.132 0.868 21 C -0.101 4.101 22 C -0.159 4.159 23 C -0.099 4.099 24 C -0.185 4.185 25 C -0.065 4.065 26 N -0.210 5.210 27 C -0.034 4.034 28 C -0.085 4.085 29 C -0.007 4.007 30 C 0.034 3.966 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.014 0.986 34 H 0.026 0.974 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.167 0.833 44 H 0.189 0.811 45 H 0.205 0.795 46 H 0.136 0.864 47 H 0.111 0.889 48 H 0.070 0.930 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.685 -14.376 16.020 22.539 hybrid contribution 0.422 2.899 -0.667 3.004 sum 7.106 -11.477 15.354 20.444 Atomic orbital electron populations 1.70144 1.05571 1.24446 1.59854 1.25277 0.96289 0.99836 1.04159 0.85440 0.77621 0.81279 0.77385 1.21427 1.21853 1.21103 1.19091 0.90156 0.83709 1.40150 0.91526 1.44483 1.02130 1.00390 1.86037 1.20951 0.83609 0.92359 0.96926 1.23021 0.98081 0.94809 1.00870 1.22378 0.93742 0.99013 0.95052 0.86006 1.21544 0.97723 1.01773 0.94926 1.21904 0.88138 0.94209 0.97628 1.47918 1.41982 1.34975 1.07404 1.20553 0.79708 0.78975 0.89661 1.90656 1.39754 1.43692 1.72399 1.21836 1.02136 0.97727 0.90367 0.86846 1.20737 0.99137 0.98348 0.91856 1.21507 1.01055 0.96851 0.96533 1.21442 0.95263 1.01575 0.91598 1.22447 1.01169 0.95231 0.99613 1.23242 0.93403 0.93978 0.95866 1.66874 1.13624 1.40475 0.99986 1.21848 0.96461 0.90895 0.94176 1.20970 1.02054 0.95576 0.89944 1.21252 0.97543 1.01683 0.80191 1.21020 0.92953 0.86141 0.96463 0.95813 0.94898 0.98584 0.97441 0.91490 0.89988 0.94887 0.87838 0.87763 0.88069 0.90139 0.90367 0.83337 0.81101 0.79534 0.86443 0.88855 0.93020 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.85 10.38 21.65 0.22 -58.62 16 2 C -0.06 -3.79 5.49 84.86 0.47 -3.32 16 3 Si 0.95 49.97 29.55 68.60 2.03 51.99 16 4 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 5 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 6 H -0.29 -15.15 7.11 99.48 0.71 -14.45 16 7 C -0.20 -11.65 9.70 84.03 0.81 -10.84 16 8 H 0.07 4.01 6.51 -2.91 -0.02 3.99 16 9 N -0.61 -30.31 3.21 -674.28 -2.16 -32.48 16 10 C 0.19 9.02 4.63 86.71 0.40 9.42 16 11 C -0.13 -4.31 6.35 32.16 0.20 -4.10 16 12 C -0.08 -2.32 3.66 -9.39 -0.03 -2.36 16 13 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 14 C -0.12 -3.12 4.98 30.09 0.15 -2.97 16 15 C 0.10 2.26 5.71 85.72 0.49 2.75 16 16 N -0.59 -18.95 2.97 -825.94 -2.45 -21.40 16 17 C 0.52 18.94 7.02 87.66 0.62 19.56 16 18 O -0.58 -26.96 15.02 -3.03 -0.05 -27.01 16 19 C -0.10 -2.77 2.53 -10.65 -0.03 -2.79 16 20 H 0.11 3.07 7.90 -2.39 -0.02 3.05 16 21 C -0.06 -1.79 6.06 30.48 0.18 -1.61 16 22 C -0.16 -3.85 6.16 -19.60 -0.12 -3.97 16 23 C -0.07 -1.41 10.17 22.47 0.23 -1.18 16 24 C -0.17 -2.47 10.12 22.35 0.23 -2.25 16 25 C 0.09 1.57 11.18 84.71 0.95 2.52 16 26 N -0.50 -11.57 10.35 -182.98 -1.89 -13.47 16 27 C 0.10 2.49 7.32 42.72 0.31 2.80 16 28 C -0.05 -1.04 5.13 30.52 0.16 -0.89 16 29 C 0.12 4.14 5.68 85.75 0.49 4.63 16 30 C 0.14 5.34 2.96 44.74 0.13 5.47 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 33 H 0.00 -0.23 7.57 -2.39 -0.02 -0.25 16 34 H 0.01 0.41 7.10 -2.38 -0.02 0.39 16 35 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.08 2.37 7.99 -2.39 -0.02 2.35 16 37 H 0.03 1.17 6.96 -2.39 -0.02 1.15 16 38 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.89 4.25 -2.38 -0.01 1.88 16 41 H 0.08 2.63 7.07 -2.39 -0.02 2.61 16 42 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 44 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 45 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 46 H 0.12 1.98 6.49 -2.38 -0.02 1.97 16 47 H 0.09 2.05 7.88 -2.39 -0.02 2.03 16 48 H 0.05 2.30 5.54 -2.39 -0.01 2.28 16 49 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -80.91 372.38 2.29 -78.62 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.96 Total: 11.50 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 5.63 Total: 10.87 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -6.29 Total: -125.97 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.05 Total: -27.01 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.03 Total: 51.99 kcal Total: -80.91 2.29 -78.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085082115.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.161 kcal (2) G-P(sol) polarization free energy of solvation -80.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds