Wall clock time and date at job start Wed Apr 1 2020 00:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48491 * 109.47435 * 240.00517 * 3 2 1 5 5 H 1.48510 * 109.47030 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46911 * 120.00113 * 3 2 1 7 7 C 1.38815 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07987 * 120.00450 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00023 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47198 * 34.99961 * 10 9 7 12 12 C 1.53002 * 109.47057 * 275.00196 * 10 9 7 13 13 C 1.52997 * 109.46957 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47377 * 59.99990 * 13 12 10 15 15 C 1.53002 * 109.47085 * 299.99931 * 14 13 12 16 16 C 1.53005 * 109.46956 * 60.00047 * 15 14 13 17 17 H 1.09003 * 109.47471 * 59.99427 * 16 15 14 18 18 N 1.46498 * 109.47227 * 180.02562 * 16 15 14 19 19 C 1.34778 * 119.99611 * 274.99902 * 18 16 15 20 20 O 1.21287 * 120.00123 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00353 * 180.02562 * 19 18 16 22 22 C 1.50694 * 109.47537 * 179.97438 * 21 19 18 23 23 C 1.34244 * 126.49945 * 265.02395 * 22 21 19 24 24 N 1.36828 * 109.92765 * 179.73686 * 23 22 21 25 25 H 0.96999 * 125.06145 * 179.97438 * 24 23 22 26 26 C 1.37680 * 109.87568 * 359.97438 * 24 23 22 27 27 C 1.39131 * 133.50448 * 180.02562 * 26 24 23 28 28 C 1.37749 * 119.77553 * 180.02562 * 27 26 24 29 29 C 1.38836 * 120.66920 * 359.95844 * 28 27 26 30 30 C 1.36623 * 120.52390 * 0.04673 * 29 28 27 31 31 C 1.39627 * 119.76758 * 359.97438 * 30 29 28 32 32 H 0.96989 * 120.00076 * 359.97438 * 1 2 3 33 33 H 0.97006 * 119.99572 * 0.02562 * 9 7 2 34 34 H 1.08999 * 109.46925 * 299.99932 * 12 10 9 35 35 H 1.08996 * 109.47083 * 60.00284 * 12 10 9 36 36 H 1.08998 * 109.47582 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47278 * 300.00455 * 13 12 10 38 38 H 1.08999 * 109.47189 * 59.99708 * 14 13 12 39 39 H 1.08995 * 109.47550 * 180.02562 * 14 13 12 40 40 H 1.08991 * 109.47213 * 300.00139 * 15 14 13 41 41 H 1.08996 * 109.47083 * 179.97438 * 15 14 13 42 42 H 0.96997 * 120.00533 * 94.99641 * 18 16 15 43 43 H 1.09007 * 109.46928 * 59.99366 * 21 19 18 44 44 H 1.09006 * 109.46843 * 299.99925 * 21 19 18 45 45 H 1.07998 * 125.03098 * 359.69936 * 23 22 21 46 46 H 1.07997 * 120.11402 * 359.97438 * 27 26 24 47 47 H 1.07998 * 119.66512 * 179.97438 * 28 27 26 48 48 H 1.08000 * 119.73716 * 180.02562 * 29 28 27 49 49 H 1.08003 * 120.11304 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9693 -3.5508 0.5871 12 6 2.4209 -4.0350 -1.4392 13 6 3.1854 -5.3603 -1.4404 14 6 2.3081 -6.4557 -0.8308 15 6 1.9453 -6.0775 0.6067 16 6 1.1808 -4.7522 0.6079 17 1 0.2697 -4.8577 0.0189 18 7 0.8339 -4.3898 1.9843 19 6 -0.2838 -4.8864 2.5506 20 8 -1.0026 -5.6330 1.9205 21 6 -0.6410 -4.5132 3.9662 22 6 -1.9265 -5.1960 4.3566 23 6 -3.1614 -4.6745 4.2848 24 7 -4.0803 -5.5902 4.7198 25 1 -5.0381 -5.4423 4.7606 26 6 -3.4431 -6.7528 5.0910 27 6 -3.8893 -7.9718 5.5916 28 6 -2.9817 -8.9687 5.8743 29 6 -1.6238 -8.7706 5.6641 30 6 -1.1638 -7.5813 5.1734 31 6 -2.0662 -6.5569 4.8803 32 1 -0.4850 0.8399 0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 1.5098 -4.1409 -2.0279 35 1 3.0456 -3.2545 -1.8735 36 1 3.4435 -5.6300 -2.4644 37 1 4.0965 -5.2548 -0.8514 38 1 1.3970 -6.5612 -1.4197 39 1 2.8529 -7.3997 -0.8312 40 1 2.8564 -5.9719 1.1956 41 1 1.3200 -6.8576 1.0408 42 1 1.4086 -3.7924 2.4881 43 1 -0.7681 -3.4328 4.0362 44 1 0.1572 -4.8294 4.6378 45 1 -3.3948 -3.6794 3.9360 46 1 -4.9436 -8.1357 5.7587 47 1 -3.3301 -9.9141 6.2632 48 1 -0.9254 -9.5627 5.8906 49 1 -0.1060 -7.4342 5.0128 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085402804.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:14 Heat of formation + Delta-G solvation = 14.319177 kcal Electronic energy + Delta-G solvation = -29588.937202 eV Core-core repulsion = 25708.478879 eV Total energy + Delta-G solvation = -3880.458324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.25583 -39.50160 -37.71618 -36.86328 -34.01395 -33.56596 -32.97685 -31.12731 -30.38003 -29.34501 -29.09799 -27.81792 -26.59246 -23.70642 -22.83707 -22.25473 -21.75569 -21.04216 -20.20683 -19.69290 -18.99072 -17.81633 -17.17347 -16.53055 -16.35123 -15.84480 -15.45445 -14.91797 -14.72112 -14.38370 -14.10328 -13.99444 -13.84921 -13.71960 -13.57645 -13.26595 -12.95958 -12.79472 -12.63249 -12.44634 -12.21920 -12.00816 -11.84202 -11.65998 -11.32125 -11.06662 -10.90803 -10.81097 -10.76918 -10.71576 -10.51067 -10.30334 -10.18434 -9.72319 -9.67575 -9.60406 -9.25628 -8.90113 -8.43642 -8.17992 -7.61073 -6.98035 -5.78377 -3.07599 1.15254 1.65242 2.67467 3.14142 3.17273 3.40974 3.46284 3.46867 3.76201 3.99642 4.55451 4.72183 4.82746 4.96713 5.08395 5.11855 5.16333 5.23737 5.28039 5.32754 5.47123 5.52128 5.54289 5.60317 5.68095 5.73008 5.76970 5.87060 5.88888 5.90591 5.95045 6.00695 6.02923 6.14650 6.15740 6.38844 6.47561 6.49404 6.53736 6.57661 6.61638 6.62443 6.72119 6.81867 6.90451 6.98766 7.16534 7.18208 7.53894 7.66855 8.08786 8.39188 8.78654 9.50794 10.08035 10.43461 11.43569 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.003022 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.864652 B = 9261.883731 C =11105.302954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.143 3.857 17 H 0.081 0.919 18 N -0.711 5.711 19 C 0.514 3.486 20 O -0.541 6.541 21 C -0.068 4.068 22 C -0.146 4.146 23 C 0.064 3.936 24 N -0.595 5.595 25 H 0.414 0.586 26 C 0.094 3.906 27 C -0.133 4.133 28 C -0.105 4.105 29 C -0.151 4.151 30 C -0.066 4.066 31 C -0.088 4.088 32 H 0.255 0.745 33 H 0.385 0.615 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.402 0.598 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.171 0.829 46 H 0.116 0.884 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 -15.325 10.927 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.063 3.937 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.037 3.963 17 H 0.099 0.901 18 N -0.361 5.361 19 C 0.300 3.700 20 O -0.418 6.418 21 C -0.108 4.108 22 C -0.153 4.153 23 C -0.062 4.062 24 N -0.198 5.198 25 H 0.251 0.749 26 C -0.013 4.013 27 C -0.153 4.153 28 C -0.124 4.124 29 C -0.170 4.170 30 C -0.084 4.084 31 C -0.093 4.093 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.236 0.764 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.188 0.812 46 H 0.134 0.866 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.508 -15.626 10.481 19.140 hybrid contribution -0.061 1.442 0.038 1.444 sum -3.569 -14.184 10.518 18.015 Atomic orbital electron populations 1.69661 1.05054 1.25674 1.57447 1.24723 0.95443 0.97560 1.03023 0.86313 0.78525 0.83771 0.77806 1.21366 1.21813 1.21322 1.19163 0.90865 0.84051 1.42930 0.91301 1.42408 1.05801 0.99463 1.88502 1.20460 0.93937 0.85833 0.93483 0.93237 1.22221 0.99898 0.95488 0.99829 1.21577 0.98518 0.95719 0.99897 1.21472 0.99838 0.97945 0.95936 1.21865 0.99940 0.97464 0.96971 1.21230 0.98785 0.93750 0.82519 0.90055 1.45914 1.25484 1.49531 1.15172 1.20525 0.80589 0.80332 0.88567 1.90675 1.50531 1.36317 1.64316 1.19951 0.95239 1.01573 0.94053 1.19578 0.93582 0.93613 1.08532 1.21633 0.88104 0.95379 1.01092 1.41666 1.08979 1.11490 1.57662 0.74929 1.18238 0.92102 0.88639 1.02298 1.19973 0.99439 0.91329 1.04584 1.20734 0.93023 0.98087 1.00533 1.20572 0.95544 0.97535 1.03392 1.20247 0.98775 0.92075 0.97345 1.19012 0.92195 0.94496 1.03548 0.93526 0.78144 0.92535 0.91692 0.92774 0.92414 0.92059 0.92493 0.92143 0.91987 0.76406 0.87959 0.88656 0.81178 0.86589 0.86109 0.86328 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.25 13.06 55.49 0.72 -26.52 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.90 21.73 29.55 -169.99 -5.02 16.70 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.27 9.93 -15.05 -0.15 -6.42 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -17.06 4.95 -53.42 -0.26 -17.33 16 10 C 0.17 3.26 2.29 -67.93 -0.16 3.10 16 11 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 12 C -0.13 -2.33 5.50 -26.73 -0.15 -2.48 16 13 C -0.12 -1.66 5.92 -26.73 -0.16 -1.81 16 14 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 15 C -0.12 -1.80 5.50 -26.73 -0.15 -1.94 16 16 C 0.14 2.44 1.98 -67.93 -0.13 2.31 16 17 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 18 N -0.71 -11.49 4.91 -53.80 -0.26 -11.75 16 19 C 0.51 8.58 7.79 -10.98 -0.09 8.49 16 20 O -0.54 -11.00 15.70 5.55 0.09 -10.92 16 21 C -0.07 -0.90 6.23 -29.04 -0.18 -1.08 16 22 C -0.15 -2.06 4.81 -102.71 -0.49 -2.56 16 23 C 0.06 0.81 11.73 -16.73 -0.20 0.61 16 24 N -0.60 -6.71 6.07 -10.65 -0.06 -6.77 16 25 H 0.41 3.26 8.96 -40.82 -0.37 2.90 16 26 C 0.09 1.23 7.28 -83.99 -0.61 0.62 16 27 C -0.13 -1.47 10.08 -39.43 -0.40 -1.87 16 28 C -0.10 -1.10 10.01 -39.54 -0.40 -1.49 16 29 C -0.15 -1.70 9.97 -39.94 -0.40 -2.09 16 30 C -0.07 -0.86 10.05 -39.65 -0.40 -1.26 16 31 C -0.09 -1.26 6.35 -105.14 -0.67 -1.93 16 32 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.40 6.06 8.60 -40.82 -0.35 5.71 16 43 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 46 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 47 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 48 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 LS Contribution 401.27 15.07 6.05 6.05 Total: -1.00 -32.96 401.27 -11.47 -44.43 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -7.74 Total: 18.02 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -4.97 Total: -11.91 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 0.13 Total: -62.37 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.96 -11.47 -44.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085402804.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.747 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds