Wall clock time and date at job start Wed Apr 1 2020 00:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00032 * 2 1 4 4 H 1.48501 * 109.47339 * 270.00112 * 3 2 1 5 5 H 1.48503 * 109.47075 * 30.00272 * 3 2 1 6 6 H 1.48500 * 109.47195 * 149.99928 * 3 2 1 7 7 C 1.38812 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99779 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99782 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47759 * 34.99837 * 10 9 7 12 12 C 1.53006 * 109.46892 * 274.99359 * 10 9 7 13 13 C 1.52998 * 109.47045 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47292 * 60.00169 * 13 12 10 15 15 C 1.53006 * 109.46938 * 299.99897 * 14 13 12 16 16 C 1.52998 * 109.47045 * 59.99952 * 15 14 13 17 17 H 1.09002 * 109.46901 * 59.99997 * 16 15 14 18 18 N 1.46496 * 109.47234 * 179.97438 * 16 15 14 19 19 C 1.34777 * 120.00258 * 275.00436 * 18 16 15 20 20 O 1.21279 * 120.00166 * 359.97438 * 19 18 16 21 21 C 1.50706 * 119.99762 * 179.97438 * 19 18 16 22 22 N 1.46500 * 109.46949 * 179.97438 * 21 19 18 23 23 C 1.36831 * 125.06410 * 264.69759 * 22 21 19 24 24 C 1.34236 * 109.93119 * 179.84801 * 23 22 21 25 25 C 1.46485 * 106.99527 * 0.40195 * 24 23 22 26 26 C 1.39631 * 134.02776 * 179.75789 * 25 24 23 27 27 C 1.36628 * 119.76224 * 179.97438 * 26 25 24 28 28 C 1.38831 * 120.53019 * 359.97438 * 27 26 25 29 29 C 1.37748 * 120.66353 * 359.97438 * 28 27 26 30 30 C 1.37692 * 125.06348 * 84.99517 * 22 21 19 31 31 H 0.97006 * 120.00490 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00206 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.46914 * 60.00414 * 12 10 9 34 34 H 1.08994 * 109.47411 * 300.00294 * 12 10 9 35 35 H 1.09007 * 109.47327 * 300.00139 * 13 12 10 36 36 H 1.09002 * 109.47080 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.47467 * 180.02562 * 14 13 12 38 38 H 1.08994 * 109.46957 * 60.00037 * 14 13 12 39 39 H 1.08994 * 109.47411 * 299.99862 * 15 14 13 40 40 H 1.09001 * 109.46914 * 179.97438 * 15 14 13 41 41 H 0.96999 * 119.99694 * 94.99826 * 18 16 15 42 42 H 1.09000 * 109.47318 * 299.99141 * 21 19 18 43 43 H 1.09000 * 109.47161 * 59.99772 * 21 19 18 44 44 H 1.08001 * 125.03464 * 0.02562 * 23 22 21 45 45 H 1.08001 * 126.50088 * 180.14640 * 24 23 22 46 46 H 1.07997 * 120.12196 * 359.97184 * 26 25 24 47 47 H 1.08003 * 119.73582 * 180.02562 * 27 26 25 48 48 H 1.07992 * 119.67167 * 179.97438 * 28 27 26 49 49 H 1.08004 * 120.11253 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9683 -3.5509 0.5885 12 6 2.4229 -4.0350 -1.4386 13 6 3.1873 -5.3603 -1.4387 14 6 2.3093 -6.4556 -0.8304 15 6 1.9444 -6.0774 0.6066 16 6 1.1799 -4.7521 0.6067 17 1 0.2697 -4.8577 0.0165 18 7 0.8301 -4.3903 1.9825 19 6 -0.2888 -4.8871 2.5463 20 8 -1.0062 -5.6335 1.9145 21 6 -0.6483 -4.5153 3.9618 22 7 -1.8988 -5.1790 4.3384 23 6 -3.1432 -4.6157 4.2572 24 6 -4.0702 -5.4917 4.6759 25 6 -3.3606 -6.7126 5.0654 26 6 -3.7638 -7.9492 5.5732 27 6 -2.8296 -8.9096 5.8411 28 6 -1.4822 -8.6661 5.6119 29 6 -1.0627 -7.4537 5.1104 30 6 -1.9965 -6.4606 4.8323 31 1 -0.4851 0.8401 -0.0004 32 1 0.3555 -2.3881 -0.0016 33 1 3.0481 -3.2544 -1.8721 34 1 1.5126 -4.1409 -2.0287 35 1 4.0977 -5.2547 -0.8484 36 1 3.4476 -5.6295 -2.4624 37 1 2.8541 -7.3997 -0.8300 38 1 1.3991 -6.5612 -1.4206 39 1 2.8546 -5.9718 1.1968 40 1 1.3185 -6.8576 1.0399 41 1 1.4037 -3.7931 2.4877 42 1 0.1486 -4.8325 4.6344 43 1 -0.7751 -3.4350 4.0326 44 1 -3.3492 -3.6156 3.9055 45 1 -5.1365 -5.3261 4.7212 46 1 -4.8103 -8.1459 5.7536 47 1 -3.1420 -9.8661 6.2335 48 1 -0.7556 -9.4350 5.8290 49 1 -0.0123 -7.2740 4.9352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085427403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:54 Heat of formation + Delta-G solvation = 27.776980 kcal Electronic energy + Delta-G solvation = -29760.823181 eV Core-core repulsion = 25880.948431 eV Total energy + Delta-G solvation = -3879.874750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35388 -39.69618 -37.94133 -36.85218 -34.12221 -33.83398 -32.89751 -31.22500 -30.58838 -29.41457 -28.82176 -27.92271 -26.51141 -23.79966 -22.80819 -22.28699 -21.50127 -21.15375 -20.53106 -20.04711 -19.49055 -17.55116 -17.11996 -16.96863 -16.43653 -15.86837 -15.40179 -15.13713 -14.96517 -14.47104 -14.12964 -13.99455 -13.88011 -13.69611 -13.63384 -13.31963 -13.05961 -12.98938 -12.69874 -12.61769 -12.38445 -12.15383 -11.96202 -11.60482 -11.53144 -11.15437 -10.98512 -10.91018 -10.83519 -10.81876 -10.63206 -10.38773 -10.23742 -9.90375 -9.78397 -9.71419 -9.48289 -9.00090 -8.69741 -8.10590 -7.61030 -7.07445 -5.86474 -3.16478 1.18194 1.67314 2.58820 2.75706 2.85867 3.35247 3.40898 3.42671 3.49052 3.98605 4.47966 4.64660 4.69565 4.81802 4.89368 5.00183 5.01001 5.03779 5.09543 5.14594 5.25161 5.44915 5.46104 5.46921 5.50569 5.65014 5.72217 5.74942 5.81993 5.82828 5.88799 5.91865 5.98669 6.06227 6.09172 6.25267 6.39429 6.41272 6.43255 6.48928 6.52023 6.62758 6.77324 6.81147 6.82033 6.84986 7.00204 7.26075 7.29595 7.59631 7.76031 8.30580 8.41549 9.42571 9.98330 10.33692 11.35334 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.003101 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.190759 B = 9026.125148 C =10863.582331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.174 3.826 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.143 3.857 17 H 0.083 0.917 18 N -0.704 5.704 19 C 0.494 3.506 20 O -0.529 6.529 21 C 0.089 3.911 22 N -0.465 5.465 23 C 0.067 3.933 24 C -0.210 4.210 25 C -0.107 4.107 26 C -0.073 4.073 27 C -0.152 4.152 28 C -0.105 4.105 29 C -0.124 4.124 30 C 0.109 3.891 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.404 0.596 42 H 0.111 0.889 43 H 0.124 0.876 44 H 0.169 0.831 45 H 0.146 0.854 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.481 -14.619 10.241 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.063 3.937 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.037 3.963 17 H 0.101 0.899 18 N -0.354 5.354 19 C 0.277 3.723 20 O -0.405 6.405 21 C -0.037 4.037 22 N -0.147 5.147 23 C -0.057 4.057 24 C -0.234 4.234 25 C -0.112 4.112 26 C -0.092 4.092 27 C -0.171 4.171 28 C -0.124 4.124 29 C -0.144 4.144 30 C 0.004 3.996 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.238 0.762 42 H 0.129 0.871 43 H 0.142 0.858 44 H 0.186 0.814 45 H 0.163 0.837 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.619 -14.790 9.709 17.703 hybrid contribution 0.517 1.451 -0.052 1.541 sum -0.102 -13.339 9.657 16.468 Atomic orbital electron populations 1.69666 1.05085 1.25700 1.57278 1.24735 0.95455 0.97635 1.02840 0.86234 0.78622 0.83961 0.77584 1.21734 1.21824 1.20791 1.19198 0.90910 0.83972 1.43171 0.91198 1.42420 1.05779 0.99482 1.88586 1.20460 0.93858 0.85718 0.93642 0.93130 1.22222 0.99985 0.95570 0.99659 1.21582 0.98493 0.95640 1.00038 1.21470 0.99931 0.98067 0.95717 1.21863 0.99920 0.97183 0.97267 1.21312 0.99033 0.94078 0.81850 0.89857 1.45856 1.24844 1.49136 1.15576 1.20749 0.81496 0.81265 0.88745 1.90747 1.50362 1.35858 1.63548 1.21631 0.86790 1.00281 0.94997 1.43398 1.05743 1.11284 1.54281 1.21869 0.82613 0.99478 1.01773 1.21609 0.98556 0.92830 1.10442 1.19203 0.92180 0.95211 1.04593 1.20225 0.99228 0.91560 0.98187 1.20560 0.93056 0.99354 1.04141 1.20726 0.95978 0.95903 0.99818 1.19986 0.97709 0.92729 1.03985 1.18193 0.95324 0.85717 1.00404 0.93478 0.78182 0.91549 0.92468 0.92369 0.92632 0.92342 0.91982 0.92028 0.92032 0.76184 0.87068 0.85849 0.81402 0.83650 0.86336 0.86388 0.86114 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.75 13.06 55.49 0.72 -26.02 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.90 21.35 29.55 -169.99 -5.02 16.32 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 8 H 0.07 1.75 7.83 -52.48 -0.41 1.33 16 9 N -0.72 -16.53 4.95 -53.42 -0.26 -16.80 16 10 C 0.17 3.12 2.29 -67.93 -0.16 2.97 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 12 C -0.13 -2.25 5.50 -26.73 -0.15 -2.39 16 13 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 14 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 15 C -0.12 -1.70 5.49 -26.73 -0.15 -1.84 16 16 C 0.14 2.31 1.97 -67.93 -0.13 2.18 16 17 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 18 N -0.70 -10.49 4.91 -53.81 -0.26 -10.76 16 19 C 0.49 7.69 7.86 -10.98 -0.09 7.60 16 20 O -0.53 -10.40 16.08 5.56 0.09 -10.31 16 21 C 0.09 1.08 6.48 -5.19 -0.03 1.04 16 22 N -0.46 -6.48 2.27 -115.71 -0.26 -6.75 16 23 C 0.07 0.90 11.27 -16.73 -0.19 0.71 16 24 C -0.21 -2.77 11.08 -37.67 -0.42 -3.19 16 25 C -0.11 -1.53 6.37 -105.14 -0.67 -2.20 16 26 C -0.07 -0.90 10.05 -39.64 -0.40 -1.30 16 27 C -0.15 -1.70 9.97 -39.94 -0.40 -2.10 16 28 C -0.10 -1.20 10.01 -39.54 -0.40 -1.60 16 29 C -0.12 -1.61 10.00 -39.43 -0.39 -2.00 16 30 C 0.11 1.60 6.80 -83.99 -0.57 1.03 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.38 9.78 7.80 -40.82 -0.32 9.46 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.40 5.47 8.60 -40.82 -0.35 5.12 16 42 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.12 1.30 8.11 -51.93 -0.42 0.88 16 44 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 46 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 47 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 48 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 49 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 402.53 15.07 6.07 6.07 Total: -1.00 -32.31 402.53 -11.43 -43.74 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -7.79 Total: 15.67 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -4.70 Total: -11.16 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.07 Total: -60.33 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.31 -11.43 -43.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085427403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.517 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds