Wall clock time and date at job start Wed Apr 1 2020 00:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00032 * 2 1 4 4 H 1.48501 * 109.47339 * 270.00112 * 3 2 1 5 5 H 1.48503 * 109.47075 * 30.00272 * 3 2 1 6 6 H 1.48500 * 109.47195 * 149.99928 * 3 2 1 7 7 C 1.38812 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99779 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99782 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47759 * 34.99837 * 10 9 7 12 12 C 1.53006 * 109.46892 * 274.99359 * 10 9 7 13 13 C 1.52998 * 109.47045 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47292 * 60.00169 * 13 12 10 15 15 C 1.53006 * 109.46938 * 299.99897 * 14 13 12 16 16 C 1.52998 * 109.47045 * 59.99952 * 15 14 13 17 17 H 1.09002 * 109.46901 * 59.99997 * 16 15 14 18 18 N 1.46496 * 109.47234 * 179.97438 * 16 15 14 19 19 C 1.34777 * 120.00258 * 275.00436 * 18 16 15 20 20 O 1.21279 * 120.00166 * 359.97438 * 19 18 16 21 21 C 1.50706 * 119.99762 * 179.97438 * 19 18 16 22 22 N 1.46500 * 109.46949 * 179.97438 * 21 19 18 23 23 C 1.36831 * 125.06410 * 264.69759 * 22 21 19 24 24 C 1.34236 * 109.93119 * 179.84801 * 23 22 21 25 25 C 1.46485 * 106.99527 * 0.40195 * 24 23 22 26 26 C 1.39631 * 134.02776 * 179.75789 * 25 24 23 27 27 C 1.36628 * 119.76224 * 179.97438 * 26 25 24 28 28 C 1.38831 * 120.53019 * 359.97438 * 27 26 25 29 29 C 1.37748 * 120.66353 * 359.97438 * 28 27 26 30 30 C 1.37692 * 125.06348 * 84.99517 * 22 21 19 31 31 H 0.97006 * 120.00490 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00206 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.46914 * 60.00414 * 12 10 9 34 34 H 1.08994 * 109.47411 * 300.00294 * 12 10 9 35 35 H 1.09007 * 109.47327 * 300.00139 * 13 12 10 36 36 H 1.09002 * 109.47080 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.47467 * 180.02562 * 14 13 12 38 38 H 1.08994 * 109.46957 * 60.00037 * 14 13 12 39 39 H 1.08994 * 109.47411 * 299.99862 * 15 14 13 40 40 H 1.09001 * 109.46914 * 179.97438 * 15 14 13 41 41 H 0.96999 * 119.99694 * 94.99826 * 18 16 15 42 42 H 1.09000 * 109.47318 * 299.99141 * 21 19 18 43 43 H 1.09000 * 109.47161 * 59.99772 * 21 19 18 44 44 H 1.08001 * 125.03464 * 0.02562 * 23 22 21 45 45 H 1.08001 * 126.50088 * 180.14640 * 24 23 22 46 46 H 1.07997 * 120.12196 * 359.97184 * 26 25 24 47 47 H 1.08003 * 119.73582 * 180.02562 * 27 26 25 48 48 H 1.07992 * 119.67167 * 179.97438 * 28 27 26 49 49 H 1.08004 * 120.11253 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9683 -3.5509 0.5885 12 6 2.4229 -4.0350 -1.4386 13 6 3.1873 -5.3603 -1.4387 14 6 2.3093 -6.4556 -0.8304 15 6 1.9444 -6.0774 0.6066 16 6 1.1799 -4.7521 0.6067 17 1 0.2697 -4.8577 0.0165 18 7 0.8301 -4.3903 1.9825 19 6 -0.2888 -4.8871 2.5463 20 8 -1.0062 -5.6335 1.9145 21 6 -0.6483 -4.5153 3.9618 22 7 -1.8988 -5.1790 4.3384 23 6 -3.1432 -4.6157 4.2572 24 6 -4.0702 -5.4917 4.6759 25 6 -3.3606 -6.7126 5.0654 26 6 -3.7638 -7.9492 5.5732 27 6 -2.8296 -8.9096 5.8411 28 6 -1.4822 -8.6661 5.6119 29 6 -1.0627 -7.4537 5.1104 30 6 -1.9965 -6.4606 4.8323 31 1 -0.4851 0.8401 -0.0004 32 1 0.3555 -2.3881 -0.0016 33 1 3.0481 -3.2544 -1.8721 34 1 1.5126 -4.1409 -2.0287 35 1 4.0977 -5.2547 -0.8484 36 1 3.4476 -5.6295 -2.4624 37 1 2.8541 -7.3997 -0.8300 38 1 1.3991 -6.5612 -1.4206 39 1 2.8546 -5.9718 1.1968 40 1 1.3185 -6.8576 1.0399 41 1 1.4037 -3.7931 2.4877 42 1 0.1486 -4.8325 4.6344 43 1 -0.7751 -3.4350 4.0326 44 1 -3.3492 -3.6156 3.9055 45 1 -5.1365 -5.3261 4.7212 46 1 -4.8103 -8.1459 5.7536 47 1 -3.1420 -9.8661 6.2335 48 1 -0.7556 -9.4350 5.8290 49 1 -0.0123 -7.2740 4.9352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085427403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:53 Heat of formation + Delta-G solvation = 9.825495 kcal Electronic energy + Delta-G solvation = -29761.601616 eV Core-core repulsion = 25880.948431 eV Total energy + Delta-G solvation = -3880.653184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.33721 -40.96608 -39.23777 -37.80243 -35.83259 -35.16724 -33.89365 -33.00794 -31.57514 -30.60824 -29.78665 -29.42024 -27.60140 -25.63366 -23.85906 -23.39383 -22.58171 -22.42334 -21.71244 -21.18124 -20.70402 -19.21834 -18.39018 -18.18822 -17.37646 -17.17528 -16.67031 -16.26630 -16.21157 -15.86501 -15.47224 -15.39221 -14.94299 -14.87183 -14.71295 -14.64323 -14.42448 -14.08833 -13.99491 -13.71429 -13.54512 -13.47524 -13.06477 -12.93877 -12.80896 -12.49518 -12.46893 -12.25883 -12.19557 -12.04941 -12.03313 -11.73068 -11.67075 -11.46586 -11.20857 -11.06347 -10.85241 -10.51821 -10.00220 -9.07716 -9.00502 -8.57351 -7.91939 -5.20815 0.24196 0.72851 1.48243 1.49687 1.52536 1.57200 1.59420 1.88827 2.34161 2.56348 3.04163 3.41360 3.62332 3.67753 3.77164 3.78387 3.83458 3.96971 4.10366 4.11927 4.17818 4.23697 4.29759 4.31247 4.41284 4.48033 4.56228 4.57126 4.61553 4.67341 4.79310 4.92202 4.95436 4.98449 5.06083 5.13171 5.18790 5.21263 5.27152 5.28291 5.43714 5.50896 5.55450 5.58768 5.64934 5.72252 5.87784 5.91428 6.27657 6.29037 6.33430 6.56525 7.20188 7.34883 8.07895 8.32320 9.30852 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.003101 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.190759 B = 9026.125148 C =10863.582331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.966 3.034 4 H -0.295 1.295 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.731 5.731 10 C 0.174 3.826 11 H 0.062 0.938 12 C -0.130 4.130 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.113 4.113 16 C 0.151 3.849 17 H 0.047 0.953 18 N -0.699 5.699 19 C 0.493 3.507 20 O -0.575 6.575 21 C 0.093 3.907 22 N -0.472 5.472 23 C 0.047 3.953 24 C -0.218 4.218 25 C -0.138 4.138 26 C -0.085 4.085 27 C -0.153 4.153 28 C -0.105 4.105 29 C -0.142 4.142 30 C 0.084 3.916 31 H 0.248 0.752 32 H 0.368 0.632 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.412 0.588 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.182 0.818 45 H 0.163 0.837 46 H 0.137 0.863 47 H 0.148 0.852 48 H 0.149 0.851 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 -16.204 11.372 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.796 3.204 4 H -0.223 1.223 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.370 5.370 10 C 0.065 3.935 11 H 0.080 0.920 12 C -0.171 4.171 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.152 4.152 16 C 0.045 3.955 17 H 0.065 0.935 18 N -0.349 5.349 19 C 0.278 3.722 20 O -0.454 6.454 21 C -0.032 4.032 22 N -0.155 5.155 23 C -0.077 4.077 24 C -0.243 4.243 25 C -0.142 4.142 26 C -0.103 4.103 27 C -0.172 4.172 28 C -0.124 4.124 29 C -0.163 4.163 30 C -0.022 4.022 31 H 0.057 0.943 32 H 0.199 0.801 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.248 0.752 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.199 0.801 45 H 0.181 0.819 46 H 0.155 0.845 47 H 0.165 0.835 48 H 0.167 0.833 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.548 -16.400 10.852 19.727 hybrid contribution -0.134 1.826 -0.422 1.879 sum 1.413 -14.574 10.430 17.978 Atomic orbital electron populations 1.69827 1.06596 1.25712 1.59792 1.25451 0.96126 1.00734 1.04143 0.85248 0.77940 0.80146 0.77041 1.22287 1.22752 1.19031 1.19562 0.91374 0.84789 1.40396 0.90272 1.42579 1.05132 1.00713 1.88564 1.20650 0.93903 0.84210 0.94688 0.91989 1.22110 0.99403 0.97495 0.98049 1.21510 0.98400 0.93256 1.01548 1.21478 0.99698 0.99164 0.94591 1.21785 1.00063 0.94956 0.98396 1.21117 0.97398 0.94952 0.82017 0.93486 1.45823 1.24972 1.49036 1.15046 1.21352 0.80711 0.80243 0.89849 1.90723 1.51686 1.38012 1.64996 1.21756 0.87324 1.01075 0.93030 1.43532 1.06177 1.11414 1.54356 1.22233 0.82867 1.00312 1.02285 1.21944 0.99515 0.92696 1.10135 1.19620 0.92552 0.96334 1.05709 1.20572 1.00663 0.91147 0.97918 1.20967 0.92836 1.00230 1.03183 1.21147 0.96885 0.95884 0.98448 1.20276 0.98128 0.93170 1.04717 1.18588 0.96084 0.86327 1.01173 0.94344 0.80060 0.93053 0.94409 0.90694 0.91001 0.89509 0.93258 0.89910 0.92895 0.75198 0.83988 0.84331 0.80127 0.81919 0.84468 0.83461 0.83344 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.12 13.06 21.65 0.28 -56.84 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.97 44.07 29.55 68.60 2.03 46.10 16 4 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.23 -11.69 9.93 84.03 0.83 -10.85 16 8 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 9 N -0.73 -33.85 4.95 -322.93 -1.60 -35.45 16 10 C 0.17 6.16 2.29 44.99 0.10 6.27 16 11 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 12 C -0.13 -4.30 5.50 30.60 0.17 -4.13 16 13 C -0.11 -2.62 5.92 30.59 0.18 -2.44 16 14 C -0.11 -2.60 5.92 30.60 0.18 -2.42 16 15 C -0.11 -2.92 5.49 30.60 0.17 -2.75 16 16 C 0.15 4.88 1.97 44.99 0.09 4.97 16 17 H 0.05 1.88 7.58 -2.39 -0.02 1.87 16 18 N -0.70 -20.64 4.91 -442.54 -2.17 -22.82 16 19 C 0.49 15.47 7.86 87.66 0.69 16.16 16 20 O -0.57 -23.34 16.08 -3.03 -0.05 -23.39 16 21 C 0.09 2.22 6.48 85.63 0.56 2.78 16 22 N -0.47 -13.26 2.27 -519.98 -1.18 -14.44 16 23 C 0.05 1.30 11.27 83.00 0.94 2.23 16 24 C -0.22 -5.87 11.08 23.51 0.26 -5.61 16 25 C -0.14 -3.94 6.37 -20.20 -0.13 -4.07 16 26 C -0.08 -1.99 10.05 22.23 0.22 -1.77 16 27 C -0.15 -3.12 9.97 22.04 0.22 -2.90 16 28 C -0.10 -2.20 10.01 22.30 0.22 -1.98 16 29 C -0.14 -3.59 10.00 22.37 0.22 -3.36 16 30 C 0.08 2.45 6.80 39.03 0.27 2.71 16 31 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 32 H 0.37 19.37 7.80 -92.71 -0.72 18.65 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.41 10.76 8.60 -92.71 -0.80 9.96 16 42 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.14 2.84 8.11 -2.39 -0.02 2.82 16 44 H 0.18 4.18 8.06 -2.91 -0.02 4.15 16 45 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 46 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 47 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 48 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 49 H 0.12 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -71.96 402.53 2.40 -69.55 By element: Atomic # 1 Polarization: 48.46 SS G_CDS: -0.57 Total: 47.89 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 5.66 Total: -10.60 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -4.67 Total: -129.55 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.05 Total: -23.39 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -71.96 2.40 -69.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085427403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.377 kcal (2) G-P(sol) polarization free energy of solvation -71.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds