Wall clock time and date at job start Wed Apr 1 2020 00:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00333 * 2 1 4 4 H 1.48500 * 109.47136 * 89.99681 * 3 2 1 5 5 H 1.48502 * 109.47019 * 209.99884 * 3 2 1 6 6 H 1.48500 * 109.47063 * 329.99763 * 3 2 1 7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99355 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00343 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00094 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84992 * 23.80345 * 10 9 7 12 12 C 1.53775 * 113.61395 * 154.99772 * 10 9 7 13 13 C 1.53788 * 87.07896 * 139.98156 * 12 10 9 14 14 H 1.08993 * 113.61523 * 89.20067 * 13 12 10 15 15 C 1.53003 * 113.61343 * 220.02109 * 13 12 10 16 16 N 1.46498 * 109.46930 * 184.99824 * 15 13 12 17 17 C 1.34774 * 119.99785 * 179.97438 * 16 15 13 18 18 O 1.21557 * 120.00384 * 0.02562 * 17 16 15 19 19 C 1.47870 * 120.00099 * 180.02562 * 17 16 15 20 20 C 1.39616 * 120.10513 * 359.72675 * 19 17 16 21 21 C 1.37981 * 120.00248 * 179.77015 * 20 19 17 22 22 C 1.38242 * 120.22718 * 0.50356 * 21 20 19 23 23 C 1.38983 * 120.22104 * 359.75003 * 22 21 20 24 24 N 1.39709 * 120.00263 * 180.02562 * 23 22 21 25 25 C 1.48228 * 110.99746 * 119.85692 * 24 23 22 26 26 C 1.51115 * 105.36329 * 144.89791 * 25 24 23 27 27 C 1.30967 * 109.45524 * 343.02354 * 26 25 24 28 28 C 1.48223 * 110.99967 * 233.48964 * 24 23 22 29 29 C 1.38679 * 119.99073 * 359.97438 * 23 22 21 30 30 C 1.53775 * 113.61162 * 252.49772 * 10 9 7 31 31 H 0.97003 * 119.99346 * 0.02562 * 1 2 3 32 32 H 0.96997 * 119.99562 * 0.02562 * 9 7 2 33 33 H 1.08997 * 113.62131 * 254.52800 * 12 10 9 34 34 H 1.09003 * 113.61849 * 25.43614 * 12 10 9 35 35 H 1.09003 * 109.47165 * 304.99946 * 15 13 12 36 36 H 1.08999 * 109.47235 * 64.99600 * 15 13 12 37 37 H 0.96996 * 119.99913 * 0.02562 * 16 15 13 38 38 H 1.08001 * 119.99894 * 0.02562 * 20 19 17 39 39 H 1.08006 * 119.88651 * 180.25507 * 21 20 19 40 40 H 1.07998 * 119.88968 * 179.76698 * 22 21 20 41 41 H 1.09006 * 110.26930 * 263.86787 * 25 24 23 42 42 H 1.09004 * 110.27297 * 25.92584 * 25 24 23 43 43 H 1.07998 * 125.27749 * 163.04462 * 26 25 24 44 44 H 1.08001 * 125.26920 * 180.02562 * 27 26 25 45 45 H 1.08998 * 110.27174 * 334.07497 * 28 24 23 46 46 H 1.09003 * 110.26443 * 96.13310 * 28 24 23 47 47 H 1.07995 * 120.11187 * 180.02562 * 29 23 22 48 48 H 1.09000 * 113.61682 * 334.56803 * 30 10 9 49 49 H 1.09005 * 113.61318 * 105.46949 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6527 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5279 -3.2970 -0.4048 12 6 5.5262 -2.3659 -0.5939 13 6 5.9842 -3.3097 0.5307 14 1 5.9138 -4.3657 0.2702 15 6 7.3408 -2.9349 1.1308 16 7 7.7428 -3.9540 2.1034 17 6 8.9124 -3.8328 2.7620 18 8 9.6335 -2.8776 2.5493 19 6 9.3185 -4.8617 3.7433 20 6 8.4893 -5.9568 3.9935 21 6 8.8725 -6.9181 4.9061 22 6 10.0716 -6.7963 5.5831 23 6 10.9018 -5.7073 5.3452 24 7 12.1129 -5.5891 6.0316 25 6 13.2573 -5.5668 5.0896 26 6 14.2652 -4.6248 5.7063 27 6 13.6765 -3.8927 6.6189 28 6 12.2162 -4.2720 6.7036 29 6 10.5283 -4.7387 4.4257 30 6 4.7865 -2.7929 1.3450 31 1 -0.4849 0.8401 -0.0004 32 1 3.8646 -0.3622 0.0014 33 1 5.6141 -2.7990 -1.5902 34 1 5.9551 -1.3661 -0.5265 35 1 8.0856 -2.8764 0.3370 36 1 7.2635 -1.9682 1.6283 37 1 7.1675 -4.7164 2.2728 38 1 7.5498 -6.0536 3.4696 39 1 8.2315 -7.7666 5.0952 40 1 10.3645 -7.5500 6.2990 41 1 13.6845 -6.5648 4.9908 42 1 12.9381 -5.1938 4.1164 43 1 15.3091 -4.5643 5.4362 44 1 14.1599 -3.1350 7.2178 45 1 11.6039 -3.5343 6.1850 46 1 11.9074 -4.3547 7.7457 47 1 11.1721 -3.8920 4.2390 48 1 5.0130 -1.9098 1.9425 49 1 4.2771 -3.5707 1.9140 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086213220.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:04 Heat of formation + Delta-G solvation = 69.110050 kcal Electronic energy + Delta-G solvation = -28044.907335 eV Core-core repulsion = 24166.824922 eV Total energy + Delta-G solvation = -3878.082413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.13405 -39.96719 -38.75991 -37.93086 -34.92993 -33.58009 -33.15597 -31.64451 -30.75028 -29.12328 -28.88619 -27.62342 -25.24714 -24.38210 -23.85428 -23.31203 -21.57314 -21.04388 -20.48643 -19.86170 -19.38159 -18.39540 -17.45260 -16.89158 -16.58481 -16.31117 -15.83942 -15.50986 -15.05159 -14.94069 -14.59304 -14.50224 -14.20157 -14.12034 -13.72638 -13.54557 -13.32894 -13.16550 -12.73895 -12.70448 -12.37212 -12.34026 -12.21652 -12.01845 -11.78993 -11.75958 -11.65768 -11.59469 -10.92833 -10.52948 -10.48061 -10.23528 -10.16902 -9.98932 -9.84478 -9.57607 -9.44266 -9.22804 -9.08740 -8.91863 -8.86815 -7.29764 -5.80868 -3.16452 0.46568 0.78361 1.68641 2.56529 2.95184 3.34726 3.35713 3.38920 3.43606 3.43776 4.16384 4.34132 4.35253 4.43683 4.55996 4.60153 4.76572 4.81578 4.83860 4.86612 5.00178 5.03437 5.04868 5.08828 5.14608 5.18998 5.35122 5.37874 5.38665 5.45217 5.60941 5.68365 5.75716 5.79217 5.82999 5.87321 5.89294 5.91159 5.93652 6.11650 6.14121 6.18815 6.24130 6.32364 6.33104 6.46098 6.64126 6.82198 6.94102 7.31101 7.95351 8.00559 8.38924 9.16704 9.89503 10.09183 11.37270 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.001794 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.954006 B =15601.206705 C =16082.605170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.737 5.737 10 C 0.172 3.828 11 H 0.084 0.916 12 C -0.145 4.145 13 C -0.127 4.127 14 H 0.091 0.909 15 C 0.131 3.869 16 N -0.718 5.718 17 C 0.554 3.446 18 O -0.540 6.540 19 C -0.121 4.121 20 C -0.087 4.087 21 C -0.118 4.118 22 C -0.068 4.068 23 C 0.065 3.935 24 N -0.467 5.467 25 C 0.053 3.947 26 C -0.168 4.168 27 C -0.166 4.166 28 C 0.050 3.950 29 C -0.091 4.091 30 C -0.161 4.161 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.400 0.600 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.134 0.866 48 H 0.077 0.923 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.320 -16.154 11.895 33.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.377 5.377 10 C 0.060 3.940 11 H 0.102 0.898 12 C -0.185 4.185 13 C -0.147 4.147 14 H 0.110 0.890 15 C 0.008 3.992 16 N -0.369 5.369 17 C 0.341 3.659 18 O -0.418 6.418 19 C -0.125 4.125 20 C -0.106 4.106 21 C -0.137 4.137 22 C -0.087 4.087 23 C -0.029 4.029 24 N -0.188 5.188 25 C -0.073 4.073 26 C -0.187 4.187 27 C -0.184 4.184 28 C -0.076 4.076 29 C -0.112 4.112 30 C -0.202 4.202 31 H 0.070 0.930 32 H 0.196 0.804 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.236 0.764 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.157 0.843 44 H 0.157 0.843 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.152 0.848 48 H 0.096 0.904 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 27.539 -15.949 12.081 34.040 hybrid contribution 0.241 1.579 -0.421 1.652 sum 27.780 -14.370 11.661 33.379 Atomic orbital electron populations 1.69703 1.05120 1.25888 1.57260 1.24698 0.95265 0.97278 1.01857 0.86558 0.79241 0.84951 0.77838 1.21044 1.20278 1.21672 1.19137 0.80695 0.94762 1.43295 0.89130 1.42761 1.04090 1.02020 1.88780 1.21503 0.89520 0.90071 0.92864 0.89777 1.23471 0.98936 0.98961 0.97114 1.22652 0.93007 0.99947 0.99066 0.89035 1.21479 0.95780 0.91108 0.90792 1.45960 1.21036 1.27339 1.42596 1.18285 0.81378 0.85535 0.80743 1.90778 1.52895 1.32492 1.65683 1.19866 0.96452 0.96496 0.99689 1.21398 0.98802 0.93076 0.97283 1.21098 0.96654 0.99365 0.96575 1.21183 0.92813 0.96546 0.98160 1.18962 0.92777 0.95549 0.95632 1.63342 1.00282 1.31186 1.24000 1.22239 0.89835 1.00434 0.94773 1.23565 0.99529 0.97696 0.97888 1.23577 0.95296 1.00148 0.99428 1.22276 0.95251 0.89033 1.01019 1.21752 0.95904 0.98972 0.94593 1.23924 0.95895 1.00552 0.99817 0.93019 0.80445 0.91581 0.90313 0.91516 0.91123 0.76411 0.85223 0.84688 0.84725 0.89069 0.91634 0.84342 0.84320 0.91422 0.89001 0.84794 0.90416 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.10 13.97 55.49 0.78 -28.32 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 22.07 27.73 -169.99 -4.71 17.36 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.25 -6.93 10.45 -15.06 -0.16 -7.09 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 9 N -0.74 -17.07 5.20 -52.64 -0.27 -17.34 16 10 C 0.17 3.10 4.48 -67.12 -0.30 2.80 16 11 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 12 C -0.15 -2.10 7.39 -25.92 -0.19 -2.29 16 13 C -0.13 -1.54 3.76 -89.80 -0.34 -1.88 16 14 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 15 C 0.13 1.60 5.51 -4.04 -0.02 1.58 16 16 N -0.72 -7.76 5.51 -61.24 -0.34 -8.09 16 17 C 0.55 7.03 7.77 -12.32 -0.10 6.93 16 18 O -0.54 -8.86 16.35 5.32 0.09 -8.77 16 19 C -0.12 -1.25 5.87 -104.99 -0.62 -1.87 16 20 C -0.09 -0.67 9.54 -39.16 -0.37 -1.04 16 21 C -0.12 -0.78 10.02 -39.67 -0.40 -1.18 16 22 C -0.07 -0.51 9.96 -39.30 -0.39 -0.90 16 23 C 0.07 0.58 4.91 -83.83 -0.41 0.17 16 24 N -0.47 -3.96 5.58 -171.20 -0.96 -4.91 16 25 C 0.05 0.40 6.47 -4.04 -0.03 0.37 16 26 C -0.17 -1.11 10.95 -35.81 -0.39 -1.50 16 27 C -0.17 -1.12 10.95 -35.81 -0.39 -1.51 16 28 C 0.05 0.39 6.44 -4.04 -0.03 0.37 16 29 C -0.09 -0.94 7.23 -38.97 -0.28 -1.22 16 30 C -0.16 -2.45 7.43 -25.92 -0.19 -2.64 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 32 H 0.36 8.32 5.79 -40.82 -0.24 8.08 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 37 H 0.40 3.27 6.50 -40.82 -0.27 3.01 16 38 H 0.13 0.72 6.40 -52.49 -0.34 0.38 16 39 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.54 6.75 -51.93 -0.35 0.19 16 43 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.07 0.59 6.30 -51.93 -0.33 0.26 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.13 1.51 6.62 -52.49 -0.35 1.16 16 48 H 0.08 1.29 7.90 -51.93 -0.41 0.88 16 49 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 397.41 15.07 5.99 5.99 Total: -1.00 -33.94 397.41 -11.47 -45.41 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.34 Total: 9.53 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -4.70 Total: -10.85 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.79 Total: -58.67 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.94 -11.47 -45.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086213220.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.521 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds