Wall clock time and date at job start Wed Apr 1 2020 00:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00333 * 2 1 4 4 H 1.48500 * 109.47136 * 89.99681 * 3 2 1 5 5 H 1.48502 * 109.47019 * 209.99884 * 3 2 1 6 6 H 1.48500 * 109.47063 * 329.99763 * 3 2 1 7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99355 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00343 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00094 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84992 * 23.80345 * 10 9 7 12 12 C 1.53775 * 113.61395 * 154.99772 * 10 9 7 13 13 C 1.53788 * 87.07896 * 139.98156 * 12 10 9 14 14 H 1.08993 * 113.61523 * 89.20067 * 13 12 10 15 15 C 1.53003 * 113.61343 * 220.02109 * 13 12 10 16 16 N 1.46498 * 109.46930 * 184.99824 * 15 13 12 17 17 C 1.34774 * 119.99785 * 179.97438 * 16 15 13 18 18 O 1.21557 * 120.00384 * 0.02562 * 17 16 15 19 19 C 1.47870 * 120.00099 * 180.02562 * 17 16 15 20 20 C 1.39616 * 120.10513 * 359.72675 * 19 17 16 21 21 C 1.37981 * 120.00248 * 179.77015 * 20 19 17 22 22 C 1.38242 * 120.22718 * 0.50356 * 21 20 19 23 23 C 1.38983 * 120.22104 * 359.75003 * 22 21 20 24 24 N 1.39709 * 120.00263 * 180.02562 * 23 22 21 25 25 C 1.48228 * 110.99746 * 119.85692 * 24 23 22 26 26 C 1.51115 * 105.36329 * 144.89791 * 25 24 23 27 27 C 1.30967 * 109.45524 * 343.02354 * 26 25 24 28 28 C 1.48223 * 110.99967 * 233.48964 * 24 23 22 29 29 C 1.38679 * 119.99073 * 359.97438 * 23 22 21 30 30 C 1.53775 * 113.61162 * 252.49772 * 10 9 7 31 31 H 0.97003 * 119.99346 * 0.02562 * 1 2 3 32 32 H 0.96997 * 119.99562 * 0.02562 * 9 7 2 33 33 H 1.08997 * 113.62131 * 254.52800 * 12 10 9 34 34 H 1.09003 * 113.61849 * 25.43614 * 12 10 9 35 35 H 1.09003 * 109.47165 * 304.99946 * 15 13 12 36 36 H 1.08999 * 109.47235 * 64.99600 * 15 13 12 37 37 H 0.96996 * 119.99913 * 0.02562 * 16 15 13 38 38 H 1.08001 * 119.99894 * 0.02562 * 20 19 17 39 39 H 1.08006 * 119.88651 * 180.25507 * 21 20 19 40 40 H 1.07998 * 119.88968 * 179.76698 * 22 21 20 41 41 H 1.09006 * 110.26930 * 263.86787 * 25 24 23 42 42 H 1.09004 * 110.27297 * 25.92584 * 25 24 23 43 43 H 1.07998 * 125.27749 * 163.04462 * 26 25 24 44 44 H 1.08001 * 125.26920 * 180.02562 * 27 26 25 45 45 H 1.08998 * 110.27174 * 334.07497 * 28 24 23 46 46 H 1.09003 * 110.26443 * 96.13310 * 28 24 23 47 47 H 1.07995 * 120.11187 * 180.02562 * 29 23 22 48 48 H 1.09000 * 113.61682 * 334.56803 * 30 10 9 49 49 H 1.09005 * 113.61318 * 105.46949 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6527 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5279 -3.2970 -0.4048 12 6 5.5262 -2.3659 -0.5939 13 6 5.9842 -3.3097 0.5307 14 1 5.9138 -4.3657 0.2702 15 6 7.3408 -2.9349 1.1308 16 7 7.7428 -3.9540 2.1034 17 6 8.9124 -3.8328 2.7620 18 8 9.6335 -2.8776 2.5493 19 6 9.3185 -4.8617 3.7433 20 6 8.4893 -5.9568 3.9935 21 6 8.8725 -6.9181 4.9061 22 6 10.0716 -6.7963 5.5831 23 6 10.9018 -5.7073 5.3452 24 7 12.1129 -5.5891 6.0316 25 6 13.2573 -5.5668 5.0896 26 6 14.2652 -4.6248 5.7063 27 6 13.6765 -3.8927 6.6189 28 6 12.2162 -4.2720 6.7036 29 6 10.5283 -4.7387 4.4257 30 6 4.7865 -2.7929 1.3450 31 1 -0.4849 0.8401 -0.0004 32 1 3.8646 -0.3622 0.0014 33 1 5.6141 -2.7990 -1.5902 34 1 5.9551 -1.3661 -0.5265 35 1 8.0856 -2.8764 0.3370 36 1 7.2635 -1.9682 1.6283 37 1 7.1675 -4.7164 2.2728 38 1 7.5498 -6.0536 3.4696 39 1 8.2315 -7.7666 5.0952 40 1 10.3645 -7.5500 6.2990 41 1 13.6845 -6.5648 4.9908 42 1 12.9381 -5.1938 4.1164 43 1 15.3091 -4.5643 5.4362 44 1 14.1599 -3.1350 7.2178 45 1 11.6039 -3.5343 6.1850 46 1 11.9074 -4.3547 7.7457 47 1 11.1721 -3.8920 4.2390 48 1 5.0130 -1.9098 1.9425 49 1 4.2771 -3.5707 1.9140 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086213220.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:03 Heat of formation + Delta-G solvation = 46.441927 kcal Electronic energy + Delta-G solvation = -28045.890299 eV Core-core repulsion = 24166.824922 eV Total energy + Delta-G solvation = -3879.065377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81326 -40.87325 -39.92648 -38.66818 -36.21346 -35.14283 -33.92512 -32.80083 -32.23733 -29.83146 -29.46478 -28.71769 -26.47866 -25.82264 -24.56714 -24.45687 -22.42907 -22.21054 -21.42423 -20.70724 -20.38174 -19.41265 -19.12988 -17.62919 -17.39233 -17.10598 -16.72652 -16.51726 -16.44766 -16.03637 -15.80801 -15.53366 -15.09134 -14.84754 -14.79242 -14.64677 -14.51397 -14.01919 -13.93862 -13.89796 -13.26943 -13.26368 -13.22746 -13.08369 -12.95124 -12.88590 -12.69211 -12.38285 -12.30618 -12.16573 -11.93241 -11.73391 -11.61062 -11.24528 -11.07199 -10.86861 -10.68672 -10.28526 -9.97104 -9.78718 -9.47516 -9.26976 -8.03325 -5.35362 -0.23537 0.15930 1.17272 1.36639 1.38841 1.46080 1.74186 2.05109 2.46978 2.72031 2.76470 3.27138 3.53538 3.58474 3.61462 3.70495 3.81490 3.84676 3.86083 3.99500 4.08342 4.16138 4.26846 4.27551 4.36346 4.39709 4.46389 4.48154 4.53228 4.56988 4.65497 4.71678 4.80233 4.92436 4.94491 4.96052 5.01912 5.18408 5.20130 5.27329 5.29369 5.31932 5.33798 5.37741 5.39199 5.64503 5.68102 5.78044 5.82104 6.18780 6.22745 6.45162 7.07679 7.10006 7.86287 8.03487 9.18103 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.001794 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.954006 B =15601.206705 C =16082.605170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.066 4.066 3 Si 0.951 3.049 4 H -0.282 1.282 5 H -0.253 1.253 6 H -0.296 1.296 7 C -0.230 4.230 8 H 0.061 0.939 9 N -0.745 5.745 10 C 0.145 3.855 11 H 0.080 0.920 12 C -0.136 4.136 13 C -0.097 4.097 14 H 0.123 0.877 15 C 0.136 3.864 16 N -0.705 5.705 17 C 0.551 3.449 18 O -0.587 6.587 19 C -0.140 4.140 20 C -0.082 4.082 21 C -0.109 4.109 22 C -0.066 4.066 23 C 0.056 3.944 24 N -0.470 5.470 25 C 0.049 3.951 26 C -0.171 4.171 27 C -0.173 4.173 28 C 0.046 3.954 29 C -0.104 4.104 30 C -0.155 4.155 31 H 0.257 0.743 32 H 0.364 0.636 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.416 0.584 38 H 0.155 0.845 39 H 0.169 0.831 40 H 0.152 0.848 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.052 0.948 46 H 0.097 0.903 47 H 0.112 0.888 48 H 0.063 0.937 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.212 -18.110 12.474 36.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.257 4.257 3 Si 0.779 3.221 4 H -0.208 1.208 5 H -0.178 1.178 6 H -0.223 1.223 7 C -0.362 4.362 8 H 0.079 0.921 9 N -0.385 5.385 10 C 0.037 3.963 11 H 0.098 0.902 12 C -0.176 4.176 13 C -0.116 4.116 14 H 0.141 0.859 15 C 0.013 3.987 16 N -0.357 5.357 17 C 0.340 3.660 18 O -0.469 6.469 19 C -0.144 4.144 20 C -0.100 4.100 21 C -0.128 4.128 22 C -0.085 4.085 23 C -0.038 4.038 24 N -0.191 5.191 25 C -0.077 4.077 26 C -0.189 4.189 27 C -0.192 4.192 28 C -0.080 4.080 29 C -0.125 4.125 30 C -0.195 4.195 31 H 0.066 0.934 32 H 0.197 0.803 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.254 0.746 38 H 0.173 0.827 39 H 0.187 0.813 40 H 0.170 0.830 41 H 0.119 0.881 42 H 0.071 0.929 43 H 0.177 0.823 44 H 0.175 0.825 45 H 0.070 0.930 46 H 0.115 0.885 47 H 0.130 0.870 48 H 0.082 0.918 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 29.474 -17.975 12.662 36.772 hybrid contribution -0.348 2.025 -0.570 2.132 sum 29.126 -15.950 12.093 35.341 Atomic orbital electron populations 1.69877 1.07029 1.26540 1.59941 1.25488 0.96103 1.01119 1.03000 0.85459 0.78685 0.80027 0.77910 1.20820 1.17755 1.22311 1.19144 0.82840 0.93483 1.40697 0.92093 1.42807 1.02453 1.04069 1.89214 1.21944 0.90830 0.87994 0.95569 0.90166 1.23364 0.95817 0.99693 0.98712 1.22484 0.91437 1.01043 0.96606 0.85916 1.21315 0.95761 0.90729 0.90929 1.45807 1.20697 1.27391 1.41790 1.18689 0.81201 0.85371 0.80784 1.90750 1.54375 1.34510 1.67282 1.19782 0.97305 0.97223 1.00095 1.21682 0.99082 0.91989 0.97257 1.21483 0.96403 0.99706 0.95164 1.21493 0.92773 0.96074 0.98136 1.19115 0.93310 0.95835 0.95537 1.63416 1.00423 1.31225 1.24069 1.22302 0.89987 1.01210 0.94211 1.23787 1.00322 0.97237 0.97543 1.23767 0.94620 1.00755 1.00016 1.22316 0.96042 0.88666 1.01007 1.21653 0.96089 0.99015 0.95736 1.23749 0.96917 1.00500 0.98384 0.93440 0.80265 0.89884 0.90682 0.91364 0.93009 0.74595 0.82723 0.81308 0.82996 0.88138 0.92907 0.82331 0.82524 0.92975 0.88488 0.87032 0.91827 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.05 13.97 21.65 0.30 -62.75 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.95 45.92 27.73 68.60 1.90 47.82 16 4 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.25 -11.05 6.52 99.48 0.65 -10.40 16 6 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 7 C -0.23 -12.98 10.45 84.03 0.88 -12.10 16 8 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 9 N -0.74 -33.96 5.20 -320.46 -1.67 -35.63 16 10 C 0.15 5.04 4.48 45.51 0.20 5.24 16 11 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 12 C -0.14 -3.60 7.39 31.12 0.23 -3.37 16 13 C -0.10 -2.04 3.76 -10.26 -0.04 -2.08 16 14 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 15 C 0.14 3.05 5.51 86.38 0.48 3.53 16 16 N -0.71 -13.80 5.51 -465.94 -2.57 -16.37 16 17 C 0.55 13.74 7.77 86.79 0.67 14.42 16 18 O -0.59 -19.81 16.35 -3.89 -0.06 -19.88 16 19 C -0.14 -2.79 5.87 -20.10 -0.12 -2.91 16 20 C -0.08 -1.03 9.54 22.54 0.21 -0.81 16 21 C -0.11 -1.06 10.02 22.21 0.22 -0.84 16 22 C -0.07 -0.83 9.96 22.45 0.22 -0.60 16 23 C 0.06 0.97 4.91 38.17 0.19 1.16 16 24 N -0.47 -7.78 5.58 -695.55 -3.88 -11.66 16 25 C 0.05 0.72 6.47 85.43 0.55 1.28 16 26 C -0.17 -2.12 10.95 25.81 0.28 -1.84 16 27 C -0.17 -2.24 10.95 25.81 0.28 -1.96 16 28 C 0.05 0.73 6.44 85.43 0.55 1.28 16 29 C -0.10 -2.18 7.23 22.67 0.16 -2.02 16 30 C -0.16 -4.40 7.43 31.12 0.23 -4.17 16 31 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.36 16.20 5.79 -92.71 -0.54 15.67 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.39 7.84 -2.39 -0.02 1.37 16 37 H 0.42 5.40 6.50 -92.71 -0.60 4.79 16 38 H 0.16 1.08 6.40 -2.91 -0.02 1.06 16 39 H 0.17 0.54 8.06 -2.91 -0.02 0.51 16 40 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 41 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.05 0.92 6.75 -2.39 -0.02 0.90 16 43 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 44 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.05 0.98 6.30 -2.39 -0.02 0.97 16 46 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 47 H 0.11 2.77 6.62 -2.91 -0.02 2.75 16 48 H 0.06 2.02 7.90 -2.39 -0.02 2.00 16 49 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -76.80 397.41 -0.52 -77.32 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.23 Total: 30.36 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.68 Total: -9.22 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -7.81 Total: -126.40 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.06 Total: -19.88 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal Total: -76.80 -0.52 -77.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086213220.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.759 kcal (2) G-P(sol) polarization free energy of solvation -76.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds