Wall clock time and date at job start Wed Apr 1 2020 00:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00337 * 2 1 4 4 H 1.48507 * 109.47243 * 270.00195 * 3 2 1 5 5 H 1.48496 * 109.47033 * 29.99914 * 3 2 1 6 6 H 1.48503 * 109.47405 * 150.00356 * 3 2 1 7 7 C 1.38818 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99902 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00330 * 179.97438 * 7 2 1 10 10 C 1.46489 * 119.99968 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.91154 * 336.24829 * 10 9 7 12 12 C 1.54047 * 113.61402 * 107.62098 * 10 9 7 13 13 C 1.53780 * 87.08022 * 89.06859 * 12 10 9 14 14 H 1.08996 * 113.61673 * 270.88416 * 13 12 10 15 15 C 1.52996 * 113.68987 * 139.99102 * 13 12 10 16 16 N 1.46500 * 109.47171 * 87.46589 * 15 13 12 17 17 C 1.34781 * 119.99657 * 180.02562 * 16 15 13 18 18 O 1.21546 * 120.00433 * 359.97438 * 17 16 15 19 19 C 1.47870 * 119.99520 * 180.02562 * 17 16 15 20 20 C 1.39612 * 120.10859 * 359.97438 * 19 17 16 21 21 C 1.37984 * 120.00066 * 179.97438 * 20 19 17 22 22 C 1.38241 * 120.23240 * 359.97438 * 21 20 19 23 23 C 1.38980 * 120.21954 * 0.02587 * 22 21 20 24 24 N 1.39702 * 120.00804 * 179.97438 * 23 22 21 25 25 C 1.48226 * 111.00187 * 299.87773 * 24 23 22 26 26 C 1.51112 * 105.36626 * 144.89694 * 25 24 23 27 27 C 1.30967 * 109.45495 * 343.02679 * 26 25 24 28 28 C 1.48230 * 111.00258 * 53.51249 * 24 23 22 29 29 C 1.38687 * 119.99056 * 359.69622 * 23 22 21 30 30 C 1.53776 * 87.08144 * 25.43087 * 13 12 10 31 31 H 0.96993 * 120.00016 * 359.97438 * 1 2 3 32 32 H 0.97008 * 119.99271 * 359.97438 * 9 7 2 33 33 H 1.09008 * 113.61805 * 334.52204 * 12 10 9 34 34 H 1.09002 * 113.69048 * 203.63057 * 12 10 9 35 35 H 1.09001 * 109.47190 * 207.46880 * 15 13 12 36 36 H 1.09003 * 109.47476 * 327.46575 * 15 13 12 37 37 H 0.96999 * 120.00130 * 359.97438 * 16 15 13 38 38 H 1.07994 * 119.99900 * 359.95399 * 20 19 17 39 39 H 1.08007 * 119.88570 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.89658 * 179.97438 * 22 21 20 41 41 H 1.09005 * 110.26563 * 263.87282 * 25 24 23 42 42 H 1.08994 * 110.26596 * 25.92222 * 25 24 23 43 43 H 1.08001 * 125.27336 * 163.00399 * 26 25 24 44 44 H 1.07999 * 125.26771 * 179.97438 * 27 26 25 45 45 H 1.09005 * 110.26354 * 334.07632 * 28 24 23 46 46 H 1.08997 * 110.26590 * 96.12688 * 28 24 23 47 47 H 1.08003 * 120.11373 * 180.27596 * 29 23 22 48 48 H 1.09004 * 113.61474 * 89.11143 * 30 13 12 49 49 H 1.08994 * 113.61588 * 219.93499 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 1 3.5285 -3.2978 0.4037 12 6 4.7901 -2.7921 -1.3465 13 6 6.0145 -2.0226 -0.8234 14 1 5.9887 -0.9563 -1.0478 15 6 7.3507 -2.6738 -1.1859 16 7 7.7870 -2.1946 -2.4997 17 6 8.9458 -2.6366 -3.0274 18 8 9.6290 -3.4324 -2.4132 19 6 9.3865 -2.1525 -4.3533 20 6 8.6037 -1.2380 -5.0606 21 6 9.0173 -0.7873 -6.2975 22 6 10.2062 -1.2377 -6.8406 23 6 10.9927 -2.1479 -6.1446 24 7 12.1930 -2.6005 -6.6979 25 6 11.9569 -3.2868 -7.9902 26 6 13.1520 -2.9450 -8.8494 27 6 13.7767 -1.9141 -8.3374 28 6 13.0617 -1.4635 -7.0848 29 6 10.5886 -2.6026 -4.8983 30 6 5.5263 -2.3658 0.5938 31 1 -0.4850 0.8400 0.0004 32 1 3.8647 -0.3621 -0.0014 33 1 4.3092 -2.3178 -2.2021 34 1 4.9756 -3.8550 -1.5008 35 1 8.0978 -2.4114 -0.4369 36 1 7.2309 -3.7569 -1.2156 37 1 7.2416 -1.5599 -2.9901 38 1 7.6744 -0.8837 -4.6399 39 1 8.4106 -0.0796 -6.8429 40 1 10.5245 -0.8816 -7.8092 41 1 11.8959 -4.3647 -7.8397 42 1 11.0416 -2.9172 -8.4523 43 1 13.4458 -3.4698 -9.7465 44 1 14.6655 -1.4571 -8.7469 45 1 12.4575 -0.5802 -7.2919 46 1 13.7817 -1.2524 -6.2942 47 1 11.2005 -3.3066 -4.3538 48 1 5.9127 -3.3125 0.9714 49 1 5.6411 -1.5479 1.3051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086492262.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:08 Heat of formation + Delta-G solvation = 70.923063 kcal Electronic energy + Delta-G solvation = -28041.895815 eV Core-core repulsion = 24163.892020 eV Total energy + Delta-G solvation = -3878.003795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.10199 -39.99397 -38.80157 -37.87426 -34.87608 -33.53425 -33.11016 -31.58529 -30.69410 -29.19081 -28.92717 -27.54598 -25.20748 -24.55994 -23.62702 -22.93891 -21.98405 -21.72125 -20.28599 -19.90133 -18.82144 -18.21544 -17.68311 -16.79446 -16.54557 -16.50940 -15.71334 -15.47653 -15.10539 -14.84397 -14.49249 -14.29639 -14.22145 -14.00854 -13.68257 -13.59904 -13.36021 -13.30948 -12.83639 -12.77325 -12.56947 -12.29604 -12.25550 -12.06653 -11.88202 -11.82291 -11.58744 -11.38902 -10.96029 -10.55371 -10.39887 -10.20430 -10.15561 -9.95472 -9.69710 -9.56607 -9.41257 -9.18752 -9.05329 -8.94705 -8.87886 -7.34249 -5.83461 -3.19764 0.42946 0.89748 1.61882 2.58253 2.96325 3.31053 3.33447 3.39830 3.40460 3.48496 4.12884 4.30111 4.35757 4.45244 4.52109 4.63259 4.72001 4.83635 4.88771 4.91650 4.94038 4.99963 5.02044 5.06880 5.13410 5.15330 5.34922 5.36369 5.41395 5.47395 5.56689 5.71556 5.80969 5.82003 5.86230 5.90024 5.91114 5.92558 5.97516 6.09897 6.19855 6.21107 6.28995 6.30546 6.45660 6.58557 6.70196 6.85471 6.85554 7.37621 7.94557 8.06748 8.36234 9.13950 9.86119 10.05279 11.34623 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.001861 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.037981 B =15042.529796 C =15879.804359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.729 5.729 10 C 0.172 3.828 11 H 0.072 0.928 12 C -0.167 4.167 13 C -0.124 4.124 14 H 0.089 0.911 15 C 0.131 3.869 16 N -0.719 5.719 17 C 0.556 3.444 18 O -0.538 6.538 19 C -0.124 4.124 20 C -0.086 4.086 21 C -0.115 4.115 22 C -0.127 4.127 23 C 0.065 3.935 24 N -0.468 5.468 25 C 0.054 3.946 26 C -0.167 4.167 27 C -0.168 4.168 28 C 0.052 3.948 29 C -0.032 4.032 30 C -0.148 4.148 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.401 0.599 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.144 0.856 48 H 0.082 0.918 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.734 -3.043 -17.598 32.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.061 3.939 11 H 0.090 0.910 12 C -0.208 4.208 13 C -0.143 4.143 14 H 0.107 0.893 15 C 0.008 3.992 16 N -0.370 5.370 17 C 0.342 3.658 18 O -0.416 6.416 19 C -0.128 4.128 20 C -0.104 4.104 21 C -0.133 4.133 22 C -0.148 4.148 23 C -0.029 4.029 24 N -0.189 5.189 25 C -0.072 4.072 26 C -0.185 4.185 27 C -0.186 4.186 28 C -0.074 4.074 29 C -0.052 4.052 30 C -0.188 4.188 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.236 0.764 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.083 0.917 46 H 0.110 0.890 47 H 0.162 0.838 48 H 0.101 0.899 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 27.163 -4.027 -16.679 32.128 hybrid contribution -0.060 2.199 -1.000 2.416 sum 27.103 -1.829 -17.679 32.411 Atomic orbital electron populations 1.69695 1.05092 1.25901 1.57169 1.24682 0.95245 0.97196 1.01884 0.86569 0.79265 0.85052 0.77749 1.21080 1.21635 1.20324 1.19121 0.80414 0.94855 1.43323 0.89007 1.42510 1.03950 1.01607 1.88890 1.21050 0.90098 0.89899 0.92878 0.91010 1.23911 0.96432 0.98880 1.01536 1.22754 0.92636 1.00035 0.98864 0.89256 1.21511 0.95733 0.99020 0.82942 1.45988 1.22604 1.47230 1.21222 1.18210 0.81137 0.81187 0.85230 1.90777 1.54569 1.34198 1.62061 1.19944 0.96771 1.00473 0.95602 1.21420 0.99026 0.95335 0.94655 1.20988 0.96354 1.00357 0.95631 1.21809 0.95346 0.97551 1.00055 1.18892 0.91677 0.97351 0.94983 1.63251 1.11244 1.21251 1.23127 1.22231 0.96761 1.01032 0.87174 1.23588 0.96644 0.98294 1.00012 1.23580 1.00030 0.98116 0.96918 1.22255 0.96044 0.92750 0.96320 1.21074 0.94031 0.97072 0.93012 1.23462 0.98744 1.01633 0.94954 0.92972 0.80533 0.91336 0.90871 0.91554 0.91153 0.76353 0.85153 0.85067 0.85754 0.88984 0.91749 0.84353 0.84371 0.91678 0.89031 0.83829 0.89942 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.70 13.97 55.49 0.78 -27.93 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.46 27.73 -169.99 -4.71 16.75 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.32 6.52 56.52 0.37 -5.96 16 7 C -0.25 -6.79 10.45 -15.05 -0.16 -6.95 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 N -0.73 -16.51 5.11 -52.50 -0.27 -16.77 16 10 C 0.17 3.13 4.58 -66.98 -0.31 2.82 16 11 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 12 C -0.17 -2.54 7.44 -25.78 -0.19 -2.73 16 13 C -0.12 -1.66 3.63 -89.81 -0.33 -1.99 16 14 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.13 1.62 5.51 -4.04 -0.02 1.60 16 16 N -0.72 -8.31 5.51 -61.24 -0.34 -8.65 16 17 C 0.56 7.27 7.77 -12.32 -0.10 7.18 16 18 O -0.54 -8.86 16.34 5.33 0.09 -8.78 16 19 C -0.12 -1.36 5.87 -104.99 -0.62 -1.97 16 20 C -0.09 -0.75 9.54 -39.16 -0.37 -1.12 16 21 C -0.11 -0.87 10.02 -39.67 -0.40 -1.27 16 22 C -0.13 -0.99 7.69 -39.31 -0.30 -1.30 16 23 C 0.07 0.61 4.91 -83.83 -0.41 0.20 16 24 N -0.47 -4.09 5.58 -171.21 -0.96 -5.04 16 25 C 0.05 0.38 6.47 -4.04 -0.03 0.36 16 26 C -0.17 -0.96 10.95 -35.82 -0.39 -1.35 16 27 C -0.17 -0.96 10.95 -35.82 -0.39 -1.35 16 28 C 0.05 0.37 6.44 -4.04 -0.03 0.34 16 29 C -0.03 -0.35 9.52 -38.96 -0.37 -0.73 16 30 C -0.15 -2.16 7.38 -25.92 -0.19 -2.35 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.36 8.01 5.76 -40.82 -0.24 7.78 16 33 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 34 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 37 H 0.40 3.86 6.50 -40.82 -0.27 3.59 16 38 H 0.13 0.91 6.40 -52.49 -0.34 0.58 16 39 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 40 H 0.12 0.77 7.02 -52.49 -0.37 0.40 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.43 6.74 -51.93 -0.35 0.08 16 43 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.07 0.42 6.29 -51.93 -0.33 0.10 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.14 1.72 7.65 -52.48 -0.40 1.32 16 48 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 49 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 397.29 15.07 5.99 5.99 Total: -1.00 -33.09 397.29 -11.46 -44.55 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.34 Total: 10.41 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -4.69 Total: -10.52 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.79 Total: -58.40 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.71 Total: 16.75 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.09 -11.46 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086492262.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.473 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds