Wall clock time and date at job start Wed Apr 1 2020 00:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00337 * 2 1 4 4 H 1.48507 * 109.47243 * 270.00195 * 3 2 1 5 5 H 1.48496 * 109.47033 * 29.99914 * 3 2 1 6 6 H 1.48503 * 109.47405 * 150.00356 * 3 2 1 7 7 C 1.38818 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99902 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00330 * 179.97438 * 7 2 1 10 10 C 1.46489 * 119.99968 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.91154 * 336.24829 * 10 9 7 12 12 C 1.54047 * 113.61402 * 107.62098 * 10 9 7 13 13 C 1.53780 * 87.08022 * 89.06859 * 12 10 9 14 14 H 1.08996 * 113.61673 * 270.88416 * 13 12 10 15 15 C 1.52996 * 113.68987 * 139.99102 * 13 12 10 16 16 N 1.46500 * 109.47171 * 87.46589 * 15 13 12 17 17 C 1.34781 * 119.99657 * 180.02562 * 16 15 13 18 18 O 1.21546 * 120.00433 * 359.97438 * 17 16 15 19 19 C 1.47870 * 119.99520 * 180.02562 * 17 16 15 20 20 C 1.39612 * 120.10859 * 359.97438 * 19 17 16 21 21 C 1.37984 * 120.00066 * 179.97438 * 20 19 17 22 22 C 1.38241 * 120.23240 * 359.97438 * 21 20 19 23 23 C 1.38980 * 120.21954 * 0.02587 * 22 21 20 24 24 N 1.39702 * 120.00804 * 179.97438 * 23 22 21 25 25 C 1.48226 * 111.00187 * 299.87773 * 24 23 22 26 26 C 1.51112 * 105.36626 * 144.89694 * 25 24 23 27 27 C 1.30967 * 109.45495 * 343.02679 * 26 25 24 28 28 C 1.48230 * 111.00258 * 53.51249 * 24 23 22 29 29 C 1.38687 * 119.99056 * 359.69622 * 23 22 21 30 30 C 1.53776 * 87.08144 * 25.43087 * 13 12 10 31 31 H 0.96993 * 120.00016 * 359.97438 * 1 2 3 32 32 H 0.97008 * 119.99271 * 359.97438 * 9 7 2 33 33 H 1.09008 * 113.61805 * 334.52204 * 12 10 9 34 34 H 1.09002 * 113.69048 * 203.63057 * 12 10 9 35 35 H 1.09001 * 109.47190 * 207.46880 * 15 13 12 36 36 H 1.09003 * 109.47476 * 327.46575 * 15 13 12 37 37 H 0.96999 * 120.00130 * 359.97438 * 16 15 13 38 38 H 1.07994 * 119.99900 * 359.95399 * 20 19 17 39 39 H 1.08007 * 119.88570 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.89658 * 179.97438 * 22 21 20 41 41 H 1.09005 * 110.26563 * 263.87282 * 25 24 23 42 42 H 1.08994 * 110.26596 * 25.92222 * 25 24 23 43 43 H 1.08001 * 125.27336 * 163.00399 * 26 25 24 44 44 H 1.07999 * 125.26771 * 179.97438 * 27 26 25 45 45 H 1.09005 * 110.26354 * 334.07632 * 28 24 23 46 46 H 1.08997 * 110.26590 * 96.12688 * 28 24 23 47 47 H 1.08003 * 120.11373 * 180.27596 * 29 23 22 48 48 H 1.09004 * 113.61474 * 89.11143 * 30 13 12 49 49 H 1.08994 * 113.61588 * 219.93499 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 1 3.5285 -3.2978 0.4037 12 6 4.7901 -2.7921 -1.3465 13 6 6.0145 -2.0226 -0.8234 14 1 5.9887 -0.9563 -1.0478 15 6 7.3507 -2.6738 -1.1859 16 7 7.7870 -2.1946 -2.4997 17 6 8.9458 -2.6366 -3.0274 18 8 9.6290 -3.4324 -2.4132 19 6 9.3865 -2.1525 -4.3533 20 6 8.6037 -1.2380 -5.0606 21 6 9.0173 -0.7873 -6.2975 22 6 10.2062 -1.2377 -6.8406 23 6 10.9927 -2.1479 -6.1446 24 7 12.1930 -2.6005 -6.6979 25 6 11.9569 -3.2868 -7.9902 26 6 13.1520 -2.9450 -8.8494 27 6 13.7767 -1.9141 -8.3374 28 6 13.0617 -1.4635 -7.0848 29 6 10.5886 -2.6026 -4.8983 30 6 5.5263 -2.3658 0.5938 31 1 -0.4850 0.8400 0.0004 32 1 3.8647 -0.3621 -0.0014 33 1 4.3092 -2.3178 -2.2021 34 1 4.9756 -3.8550 -1.5008 35 1 8.0978 -2.4114 -0.4369 36 1 7.2309 -3.7569 -1.2156 37 1 7.2416 -1.5599 -2.9901 38 1 7.6744 -0.8837 -4.6399 39 1 8.4106 -0.0796 -6.8429 40 1 10.5245 -0.8816 -7.8092 41 1 11.8959 -4.3647 -7.8397 42 1 11.0416 -2.9172 -8.4523 43 1 13.4458 -3.4698 -9.7465 44 1 14.6655 -1.4571 -8.7469 45 1 12.4575 -0.5802 -7.2919 46 1 13.7817 -1.2524 -6.2942 47 1 11.2005 -3.3066 -4.3538 48 1 5.9127 -3.3125 0.9714 49 1 5.6411 -1.5479 1.3051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086492262.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:07 Heat of formation + Delta-G solvation = 49.253099 kcal Electronic energy + Delta-G solvation = -28042.835495 eV Core-core repulsion = 24163.892020 eV Total energy + Delta-G solvation = -3878.943475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.77429 -40.91835 -40.00329 -38.63162 -36.14933 -35.06315 -33.92022 -32.70157 -32.21894 -29.93901 -29.42927 -28.64935 -26.45026 -25.70201 -24.93421 -23.88626 -22.97732 -22.66602 -21.19128 -20.33565 -20.14954 -19.55592 -19.10033 -17.49159 -17.38765 -17.27161 -16.68472 -16.49893 -16.38275 -16.05346 -15.66168 -15.42031 -15.06428 -14.85413 -14.74245 -14.67605 -14.62237 -14.17032 -13.96078 -13.85113 -13.36075 -13.22153 -13.13266 -13.02602 -12.92865 -12.90938 -12.65432 -12.56034 -12.26601 -12.24146 -11.89281 -11.65931 -11.53101 -11.16946 -10.93261 -10.82748 -10.65729 -10.26675 -9.97966 -9.80379 -9.40221 -9.28708 -8.01864 -5.35606 -0.30063 0.21197 1.20622 1.38179 1.42029 1.49579 1.72865 2.05708 2.48887 2.71124 2.79687 3.28482 3.51720 3.57095 3.64356 3.73641 3.82125 3.85334 3.87820 3.96872 4.02726 4.10860 4.23918 4.27360 4.36708 4.42822 4.44213 4.49994 4.52106 4.65287 4.70320 4.76389 4.85365 4.93967 4.96211 4.97802 5.08630 5.18668 5.21980 5.26825 5.30584 5.32156 5.39788 5.41850 5.46100 5.54280 5.59124 5.81673 5.87399 6.22807 6.23332 6.45956 7.08700 7.11209 7.85431 8.04288 9.19600 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.001861 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.037981 B =15042.529796 C =15879.804359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.251 1.251 7 C -0.233 4.233 8 H 0.056 0.944 9 N -0.733 5.733 10 C 0.145 3.855 11 H 0.057 0.943 12 C -0.154 4.154 13 C -0.105 4.105 14 H 0.093 0.907 15 C 0.138 3.862 16 N -0.710 5.710 17 C 0.554 3.446 18 O -0.581 6.581 19 C -0.139 4.139 20 C -0.084 4.084 21 C -0.109 4.109 22 C -0.120 4.120 23 C 0.063 3.937 24 N -0.489 5.489 25 C 0.050 3.950 26 C -0.169 4.169 27 C -0.169 4.169 28 C 0.048 3.952 29 C -0.052 4.052 30 C -0.134 4.134 31 H 0.258 0.742 32 H 0.367 0.633 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.412 0.588 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.145 0.855 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.121 0.879 48 H 0.105 0.895 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.985 -1.502 -19.386 34.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.175 1.175 7 C -0.364 4.364 8 H 0.074 0.926 9 N -0.374 5.374 10 C 0.036 3.964 11 H 0.075 0.925 12 C -0.195 4.195 13 C -0.123 4.123 14 H 0.111 0.889 15 C 0.014 3.986 16 N -0.361 5.361 17 C 0.343 3.657 18 O -0.462 6.462 19 C -0.143 4.143 20 C -0.102 4.102 21 C -0.127 4.127 22 C -0.140 4.140 23 C -0.031 4.031 24 N -0.211 5.211 25 C -0.076 4.076 26 C -0.188 4.188 27 C -0.187 4.187 28 C -0.078 4.078 29 C -0.072 4.072 30 C -0.173 4.173 31 H 0.066 0.934 32 H 0.201 0.799 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.250 0.750 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.162 0.838 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.176 0.824 44 H 0.177 0.823 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.139 0.861 48 H 0.124 0.876 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 29.462 -2.509 -18.481 34.869 hybrid contribution -0.768 1.575 -0.461 1.812 sum 28.694 -0.934 -18.942 34.395 Atomic orbital electron populations 1.69889 1.07230 1.26692 1.59640 1.25526 0.96113 1.01339 1.02642 0.85398 0.78627 0.79437 0.78241 1.20042 1.22583 1.17522 1.19070 0.82634 0.93447 1.41273 0.92633 1.42414 1.02211 1.03485 1.89316 1.21384 0.91539 0.87830 0.95693 0.92479 1.23757 0.96498 1.00180 0.99044 1.22580 0.92217 0.99978 0.97574 0.88879 1.21370 0.95024 0.98753 0.83414 1.45889 1.22278 1.47035 1.20929 1.18554 0.80914 0.80491 0.85762 1.90750 1.55871 1.36221 1.63344 1.19814 0.97427 1.01976 0.95035 1.21636 0.99254 0.94418 0.94931 1.21339 0.96244 1.00067 0.95099 1.22041 0.95021 0.96444 1.00525 1.18941 0.92167 0.97548 0.94493 1.63198 1.11404 1.22282 1.24194 1.22281 0.97838 1.00594 0.86870 1.23742 0.96016 0.98500 1.00498 1.23746 1.00571 0.98200 0.96159 1.22318 0.95967 0.92545 0.96947 1.21002 0.94422 0.97722 0.94027 1.23362 0.95443 1.02936 0.95543 0.93368 0.79923 0.92604 0.89199 0.91442 0.91419 0.75029 0.83294 0.82166 0.83754 0.89634 0.91303 0.82385 0.82330 0.91015 0.89544 0.86103 0.87634 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.33 13.97 21.65 0.30 -62.03 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.96 43.96 27.73 68.60 1.90 45.86 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.25 -10.30 6.52 99.48 0.65 -9.65 16 7 C -0.23 -12.99 10.45 84.03 0.88 -12.11 16 8 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 9 N -0.73 -32.46 5.11 -320.02 -1.64 -34.09 16 10 C 0.14 5.11 4.58 45.61 0.21 5.32 16 11 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 12 C -0.15 -4.42 7.44 31.21 0.23 -4.18 16 13 C -0.10 -2.52 3.63 -10.27 -0.04 -2.56 16 14 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 15 C 0.14 3.11 5.51 86.38 0.48 3.58 16 16 N -0.71 -15.09 5.51 -465.95 -2.57 -17.65 16 17 C 0.55 14.23 7.77 86.79 0.67 14.90 16 18 O -0.58 -19.44 16.34 -3.86 -0.06 -19.50 16 19 C -0.14 -2.95 5.87 -20.10 -0.12 -3.06 16 20 C -0.08 -1.26 9.54 22.54 0.21 -1.04 16 21 C -0.11 -1.31 10.02 22.21 0.22 -1.08 16 22 C -0.12 -1.59 7.69 22.45 0.17 -1.41 16 23 C 0.06 1.13 4.91 38.17 0.19 1.31 16 24 N -0.49 -8.31 5.58 -695.58 -3.88 -12.19 16 25 C 0.05 0.66 6.47 85.43 0.55 1.21 16 26 C -0.17 -1.62 10.95 25.81 0.28 -1.34 16 27 C -0.17 -1.58 10.95 25.81 0.28 -1.30 16 28 C 0.05 0.61 6.44 85.43 0.55 1.16 16 29 C -0.05 -1.16 9.52 22.67 0.22 -0.94 16 30 C -0.13 -3.55 7.38 31.12 0.23 -3.32 16 31 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 32 H 0.37 15.40 5.76 -92.70 -0.53 14.86 16 33 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.09 2.29 7.90 -2.39 -0.02 2.27 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.61 7.85 -2.39 -0.02 1.59 16 37 H 0.41 6.83 6.50 -92.71 -0.60 6.23 16 38 H 0.15 1.60 6.40 -2.91 -0.02 1.58 16 39 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 40 H 0.14 1.32 7.02 -2.91 -0.02 1.30 16 41 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.07 0.82 6.74 -2.39 -0.02 0.80 16 43 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 44 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 45 H 0.07 0.79 6.29 -2.38 -0.02 0.78 16 46 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.12 3.16 7.65 -2.91 -0.02 3.14 16 48 H 0.11 2.35 8.10 -2.38 -0.02 2.33 16 49 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -74.36 397.29 -0.47 -74.83 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.22 Total: 32.92 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 5.69 Total: -8.15 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -7.78 Total: -125.96 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.06 Total: -19.50 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.90 Total: 45.86 kcal Total: -74.36 -0.47 -74.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086492262.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.086 kcal (2) G-P(sol) polarization free energy of solvation -74.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds