Wall clock time and date at job start Wed Apr 1 2020 00:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99947 * 2 1 4 4 H 1.48504 * 109.47077 * 239.99618 * 3 2 1 5 5 H 1.48506 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47259 * 119.99543 * 3 2 1 7 7 C 1.38806 * 120.00359 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00519 * 190.11027 * 7 2 1 9 9 N 1.36942 * 120.00048 * 10.10203 * 7 2 1 10 10 C 1.47200 * 121.32835 * 211.32479 * 9 7 2 11 11 C 1.52779 * 107.80358 * 237.93792 * 10 9 7 12 12 C 1.53062 * 110.81072 * 302.26737 * 11 10 9 13 13 H 1.09002 * 112.49888 * 288.17967 * 12 11 10 14 14 C 1.55910 * 106.17591 * 163.41932 * 12 11 10 15 15 N 1.47641 * 104.42249 * 283.24834 * 14 12 11 16 16 C 1.34777 * 125.73239 * 155.02942 * 15 14 12 17 17 O 1.21279 * 119.99919 * 5.04624 * 16 15 14 18 18 C 1.50703 * 119.99865 * 185.04153 * 16 15 14 19 19 C 1.50697 * 115.54803 * 270.87804 * 18 16 15 20 20 C 1.38674 * 120.41996 * 330.31587 * 19 18 16 21 21 C 1.38636 * 118.42069 * 180.02562 * 20 19 18 22 22 C 1.38224 * 119.16137 * 0.02562 * 21 20 19 23 23 N 1.31857 * 120.76321 * 0.02562 * 22 21 20 24 24 C 1.31885 * 121.72356 * 359.70259 * 23 22 21 25 25 C 1.52988 * 117.49879 * 125.16770 * 18 16 15 26 26 C 1.52995 * 60.00171 * 252.50833 * 25 18 16 27 27 C 1.47461 * 108.53376 * 335.03987 * 15 14 12 28 28 C 1.53324 * 106.45164 * 0.54604 * 27 15 14 29 29 H 1.08998 * 108.90822 * 268.41654 * 28 27 15 30 30 C 1.44659 * 121.74663 * 31.39223 * 9 7 2 31 31 H 0.97007 * 120.00444 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.79403 * 118.36171 * 10 9 7 33 33 H 1.09006 * 109.78859 * 357.51396 * 10 9 7 34 34 H 1.09008 * 109.20595 * 181.92607 * 11 10 9 35 35 H 1.09000 * 109.21239 * 62.61820 * 11 10 9 36 36 H 1.08997 * 110.44651 * 41.98680 * 14 12 11 37 37 H 1.09010 * 110.44158 * 164.39192 * 14 12 11 38 38 H 1.07994 * 120.79180 * 0.03352 * 20 19 18 39 39 H 1.08001 * 120.41480 * 180.02562 * 21 20 19 40 40 H 1.07996 * 119.61995 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.61462 * 180.30999 * 24 23 22 42 42 H 1.09005 * 117.49759 * 0.02562 * 25 18 16 43 43 H 1.09002 * 117.50152 * 145.01843 * 25 18 16 44 44 H 1.08999 * 117.50025 * 252.50456 * 26 25 18 45 45 H 1.09004 * 117.49592 * 107.48833 * 26 25 18 46 46 H 1.09001 * 110.05765 * 241.29829 * 27 15 14 47 47 H 1.09002 * 110.05979 * 119.79379 * 27 15 14 48 48 H 1.08999 * 107.92716 * 6.92700 * 30 9 7 49 49 H 1.08995 * 109.20649 * 248.43170 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0777 -1.2093 0.1647 9 7 1.3415 -2.3790 -0.2070 10 6 1.7915 -3.6349 0.4151 11 6 2.0600 -4.6403 -0.7035 12 6 0.8062 -4.8538 -1.5551 13 1 0.0374 -5.4214 -1.0307 14 6 1.2876 -5.5298 -2.8750 15 7 1.8884 -4.4289 -3.6540 16 6 2.8313 -4.5628 -4.6078 17 8 3.1915 -5.6681 -4.9534 18 6 3.4378 -3.3391 -5.2448 19 6 2.7194 -2.8163 -6.4620 20 6 2.0189 -3.6811 -7.2893 21 6 1.3737 -3.1557 -8.3982 22 6 1.4500 -1.7971 -8.6410 23 7 2.1265 -1.0046 -7.8329 24 6 2.7479 -1.4687 -6.7662 25 6 4.9617 -3.2076 -5.2124 26 6 4.0977 -2.3146 -4.3197 27 6 1.2838 -3.1583 -3.2131 28 6 0.2825 -3.5143 -2.1079 29 1 -0.6970 -3.6766 -2.5576 30 6 0.1648 -2.4482 -1.0455 31 1 -0.4851 0.8401 -0.0004 32 1 1.0149 -4.0178 1.0771 33 1 2.7065 -3.4593 0.9810 34 1 2.3624 -5.5916 -0.2656 35 1 2.8643 -4.2660 -1.3368 36 1 2.0330 -6.2956 -2.6607 37 1 0.4428 -5.9616 -3.4117 38 1 1.9768 -4.7387 -7.0748 39 1 0.8184 -3.7999 -9.0639 40 1 0.9499 -1.3799 -9.5024 41 1 3.2879 -0.7880 -6.1248 42 1 5.5256 -4.0064 -4.7308 43 1 5.4451 -2.7430 -6.0718 44 1 4.0128 -1.2625 -4.5917 45 1 4.0933 -2.5257 -3.2503 46 1 0.7673 -2.6812 -4.0461 47 1 2.0538 -2.4943 -2.8203 48 1 0.0371 -1.4778 -1.5252 49 1 -0.7063 -2.6566 -0.4244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088077551.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:49 Heat of formation + Delta-G solvation = 58.421984 kcal Electronic energy + Delta-G solvation = -31346.190736 eV Core-core repulsion = 27467.644853 eV Total energy + Delta-G solvation = -3878.545883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.97382 -39.92097 -38.50251 -36.61857 -35.33713 -32.65044 -32.53207 -30.95238 -30.84369 -30.57365 -27.60171 -25.91404 -25.11994 -23.82280 -23.70062 -22.40253 -22.18929 -21.56165 -20.91610 -18.90527 -18.47713 -17.58206 -17.03784 -16.68052 -16.10814 -15.82495 -15.50870 -15.15472 -14.77821 -14.53469 -14.13892 -13.98041 -13.67726 -13.62777 -13.45607 -13.15973 -13.03111 -12.89011 -12.44032 -12.29450 -12.12362 -11.84658 -11.77780 -11.51572 -11.18281 -11.11631 -11.01213 -10.78887 -10.75251 -10.59186 -10.57794 -10.28226 -10.00497 -9.89239 -9.80221 -9.54487 -9.42817 -9.36495 -8.93318 -8.55620 -8.38307 -6.68177 -5.86212 -3.35118 0.93859 1.15998 2.65424 3.03244 3.32722 3.39064 3.39718 3.48866 3.90925 4.19448 4.41589 4.46791 4.48313 4.66505 4.78059 4.84281 4.91140 4.94226 5.01824 5.10367 5.21519 5.32508 5.34870 5.44145 5.50567 5.58777 5.62390 5.70764 5.74085 5.85817 5.87864 5.88391 6.00444 6.02987 6.04005 6.13859 6.15368 6.29307 6.38427 6.42860 6.51456 6.55243 6.66388 6.69021 6.79695 6.96050 7.23026 7.57874 7.71087 7.71738 7.84811 8.26124 8.41191 9.17710 9.77094 10.37852 11.21595 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.004577 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.518165 B = 6115.769881 C = 7473.016172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.009 3.991 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.583 5.583 10 C 0.139 3.861 11 C -0.126 4.126 12 C -0.088 4.088 13 H 0.091 0.909 14 C 0.107 3.893 15 N -0.602 5.602 16 C 0.569 3.431 17 O -0.548 6.548 18 C -0.116 4.116 19 C -0.083 4.083 20 C -0.066 4.066 21 C -0.169 4.169 22 C 0.091 3.909 23 N -0.479 5.479 24 C 0.105 3.895 25 C -0.135 4.135 26 C -0.153 4.153 27 C 0.113 3.887 28 C -0.114 4.114 29 H 0.063 0.937 30 C 0.177 3.823 31 H 0.256 0.744 32 H 0.021 0.979 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.056 0.944 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.955 -7.281 -11.823 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.731 3.269 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.304 5.304 10 C 0.013 3.987 11 C -0.165 4.165 12 C -0.107 4.107 13 H 0.110 0.890 14 C -0.015 4.015 15 N -0.335 5.335 16 C 0.356 3.644 17 O -0.427 6.427 18 C -0.120 4.120 19 C -0.086 4.086 20 C -0.092 4.092 21 C -0.189 4.189 22 C -0.065 4.065 23 N -0.187 5.187 24 C -0.052 4.052 25 C -0.172 4.172 26 C -0.190 4.190 27 C -0.009 4.009 28 C -0.135 4.135 29 H 0.081 0.919 30 C 0.049 3.951 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.173 0.827 41 H 0.176 0.824 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.128 0.872 45 H 0.132 0.868 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 3.120 -6.783 -12.238 14.336 hybrid contribution 0.142 -0.115 0.132 0.225 sum 3.262 -6.898 -12.107 14.310 Atomic orbital electron populations 1.69939 1.05260 1.25737 1.53719 1.25156 0.95357 0.98324 1.00173 0.86397 0.78931 0.83350 0.78231 1.20819 1.21577 1.20839 1.19043 0.90649 0.83461 1.45060 0.91827 1.43421 1.31551 1.03684 1.51785 1.20940 0.97713 0.87473 0.92609 1.21966 0.96585 0.99120 0.98868 1.22328 0.98076 0.96222 0.94072 0.89040 1.22588 0.97260 0.89737 0.91922 1.48620 1.38382 1.09966 1.36491 1.18854 0.78293 0.88673 0.78542 1.90670 1.62347 1.26845 1.62797 1.19888 0.96274 0.98342 0.97452 1.19712 0.98982 0.94702 0.95184 1.21514 0.94030 1.00485 0.93182 1.22121 1.01175 0.97022 0.98554 1.22783 0.95483 0.90341 0.97941 1.67751 1.07573 1.39462 1.03928 1.22702 0.96056 0.92684 0.93761 1.23094 0.89326 1.02367 1.02429 1.23326 1.00877 0.96536 0.98223 1.22086 0.97151 0.85330 0.96315 1.22155 0.96914 0.97408 0.97023 0.91877 1.19768 0.88992 0.96621 0.89705 0.93430 0.96081 0.92752 0.93333 0.92265 0.90898 0.92163 0.84800 0.84719 0.82734 0.82425 0.87736 0.87761 0.87225 0.86819 0.92548 0.89244 0.89091 0.96083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 11.10 55.49 0.62 -24.01 16 2 C 0.01 0.23 5.06 -17.43 -0.09 0.15 16 3 Si 0.90 20.53 29.57 -169.99 -5.03 15.50 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.37 9.65 -15.06 -0.15 -6.51 16 8 H 0.06 1.59 7.85 -52.49 -0.41 1.18 16 9 N -0.58 -13.24 2.84 -175.48 -0.50 -13.74 16 10 C 0.14 2.70 6.50 -3.77 -0.02 2.67 16 11 C -0.13 -2.06 4.97 -26.81 -0.13 -2.19 16 12 C -0.09 -1.34 3.71 -88.47 -0.33 -1.67 16 13 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 14 C 0.11 1.57 6.16 -1.86 -0.01 1.56 16 15 N -0.60 -9.44 2.85 -169.96 -0.48 -9.93 16 16 C 0.57 9.14 5.95 -10.98 -0.07 9.07 16 17 O -0.55 -10.15 17.15 5.56 0.10 -10.06 16 18 C -0.12 -1.59 1.79 -156.82 -0.28 -1.87 16 19 C -0.08 -1.11 5.50 -104.48 -0.57 -1.68 16 20 C -0.07 -0.84 9.44 -39.27 -0.37 -1.22 16 21 C -0.17 -1.81 10.11 -39.44 -0.40 -2.21 16 22 C 0.09 1.02 11.18 -17.55 -0.20 0.82 16 23 N -0.48 -6.44 10.36 -13.25 -0.14 -6.58 16 24 C 0.10 1.37 10.53 -17.55 -0.18 1.19 16 25 C -0.13 -1.60 9.91 -26.74 -0.26 -1.86 16 26 C -0.15 -1.94 8.22 -26.74 -0.22 -2.16 16 27 C 0.11 1.87 5.28 -3.35 -0.02 1.85 16 28 C -0.11 -1.95 2.76 -90.91 -0.25 -2.20 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 C 0.18 3.80 4.51 -6.04 -0.03 3.77 16 31 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 1.05 7.96 -51.93 -0.41 0.64 16 34 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.06 1.05 7.13 -51.93 -0.37 0.68 16 36 H 0.07 1.08 7.92 -51.93 -0.41 0.67 16 37 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 38 H 0.13 1.79 7.24 -52.49 -0.38 1.40 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.16 1.84 5.97 -52.49 -0.31 1.53 16 42 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.11 1.26 6.13 -51.93 -0.32 0.94 16 45 H 0.11 1.61 7.41 -51.93 -0.38 1.23 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.09 1.64 6.15 -51.93 -0.32 1.32 16 48 H 0.09 2.23 6.02 -51.93 -0.31 1.92 16 49 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -29.47 383.91 -10.65 -40.12 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.42 Total: 5.38 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -3.58 Total: -2.48 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.51 Total: -54.25 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.10 Total: -10.06 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.47 -10.65 -40.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088077551.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.547 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds