Wall clock time and date at job start Wed Apr 1 2020 00:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00290 * 2 1 4 4 H 1.48501 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47004 * 299.99879 * 3 2 1 6 6 H 1.48504 * 109.46878 * 60.00087 * 3 2 1 7 7 C 1.38819 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99823 * 153.63815 * 7 2 1 9 9 N 1.36932 * 119.99944 * 333.63851 * 7 2 1 10 10 C 1.44347 * 116.42886 * 335.55506 * 9 7 2 11 11 C 1.51579 * 113.01637 * 188.02556 * 10 9 7 12 12 C 1.52909 * 111.66252 * 320.12650 * 11 10 9 13 13 H 1.08995 * 112.47249 * 293.92824 * 12 11 10 14 14 C 1.55414 * 106.56456 * 169.88286 * 12 11 10 15 15 N 1.47379 * 106.74220 * 270.27923 * 14 12 11 16 16 C 1.34774 * 125.74240 * 179.02651 * 15 14 12 17 17 O 1.21280 * 120.00194 * 5.21984 * 16 15 14 18 18 C 1.50699 * 120.00037 * 185.21210 * 16 15 14 19 19 H 1.08997 * 110.34104 * 330.39080 * 18 16 15 20 20 C 1.54334 * 110.29202 * 92.49279 * 18 16 15 21 21 C 1.54371 * 102.39394 * 145.27097 * 20 18 16 22 22 C 1.51226 * 105.20387 * 333.65550 * 21 20 18 23 23 C 1.38540 * 130.86431 * 197.11003 * 22 21 20 24 24 C 1.38580 * 118.62962 * 180.02562 * 23 22 21 25 25 C 1.38230 * 118.98964 * 0.02648 * 24 23 22 26 26 N 1.31689 * 120.79793 * 0.02562 * 25 24 23 27 27 C 1.32298 * 122.03363 * 0.02562 * 26 25 24 28 28 C 1.47937 * 108.51334 * 359.29585 * 15 14 12 29 29 C 1.54097 * 110.27051 * 60.57433 * 12 11 10 30 30 H 1.08995 * 109.18887 * 187.76338 * 29 12 11 31 31 C 1.43979 * 116.42186 * 155.53623 * 9 7 2 32 32 H 0.97003 * 119.99263 * 0.02562 * 1 2 3 33 33 H 1.09001 * 108.77586 * 67.12002 * 10 9 7 34 34 H 1.08998 * 108.77672 * 308.94096 * 10 9 7 35 35 H 1.08998 * 109.03887 * 199.56070 * 11 10 9 36 36 H 1.08997 * 109.03469 * 80.68825 * 11 10 9 37 37 H 1.08996 * 110.00321 * 150.96006 * 14 12 11 38 38 H 1.08997 * 110.04534 * 29.62497 * 14 12 11 39 39 H 1.08993 * 110.82526 * 27.04397 * 20 18 16 40 40 H 1.09006 * 110.82371 * 263.48993 * 20 18 16 41 41 H 1.08992 * 110.31468 * 92.61808 * 21 20 18 42 42 H 1.08996 * 110.31537 * 214.70256 * 21 20 18 43 43 H 1.07998 * 120.65200 * 0.05412 * 23 22 21 44 44 H 1.08001 * 120.50849 * 179.97438 * 24 23 22 45 45 H 1.07991 * 119.60275 * 180.02562 * 25 24 23 46 46 H 1.09006 * 110.56668 * 93.91864 * 28 15 14 47 47 H 1.08998 * 110.56163 * 216.76811 * 28 15 14 48 48 H 1.09002 * 108.11675 * 304.64303 * 31 9 7 49 49 H 1.08996 * 108.11626 * 61.31726 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0060 -1.2508 -0.4159 9 7 1.4323 -2.3266 0.5255 10 6 0.4008 -2.1167 1.5132 11 6 -0.0489 -3.4002 2.1826 12 6 -0.1441 -4.5543 1.1839 13 1 -0.9276 -4.3999 0.4422 14 6 -0.3539 -5.8475 2.0200 15 7 0.9869 -6.3762 2.3279 16 6 1.2499 -7.4809 3.0537 17 8 0.3403 -8.1856 3.4369 18 6 2.6744 -7.8407 3.3891 19 1 3.3486 -7.4840 2.6104 20 6 3.0702 -7.2418 4.7553 21 6 4.0139 -8.3205 5.3290 22 6 3.5828 -9.6135 4.6739 23 6 3.8382 -10.9317 5.0154 24 6 3.3086 -11.9375 4.2227 25 6 2.5469 -11.5921 3.1221 26 7 2.3247 -10.3284 2.8257 27 6 2.8132 -9.3397 3.5565 28 6 1.9955 -5.4865 1.7118 29 6 1.2325 -4.8227 0.5455 30 1 1.1189 -5.5498 -0.2585 31 6 1.9200 -3.5883 0.0323 32 1 -0.4849 0.8401 -0.0004 33 1 -0.4592 -1.6536 1.0294 34 1 0.7791 -1.4369 2.2766 35 1 -1.0271 -3.2409 2.6363 36 1 0.6651 -3.6632 2.9630 37 1 -0.9189 -6.5781 1.4411 38 1 -0.8837 -5.6135 2.9434 39 1 2.1942 -7.1154 5.3914 40 1 3.5963 -6.2959 4.6261 41 1 5.0486 -8.0930 5.0728 42 1 3.8985 -8.3876 6.4108 43 1 4.4373 -11.1699 5.8818 44 1 3.4889 -12.9754 4.4606 45 1 2.1291 -12.3679 2.4978 46 1 2.3331 -4.7368 2.4275 47 1 2.8389 -6.0661 1.3365 48 1 1.8234 -3.5881 -1.0534 49 1 2.9799 -3.6606 0.2760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088084072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:32 Heat of formation + Delta-G solvation = 33.493476 kcal Electronic energy + Delta-G solvation = -30133.135023 eV Core-core repulsion = 26253.508159 eV Total energy + Delta-G solvation = -3879.626864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.23872 -40.06009 -38.33250 -36.26048 -35.60423 -32.92731 -32.57471 -31.55403 -30.37398 -29.60121 -28.79601 -27.57760 -25.49640 -23.81450 -23.71425 -22.43533 -22.08006 -21.69027 -21.14855 -19.11698 -17.93365 -17.38418 -17.05622 -16.74474 -16.48888 -15.69699 -15.62576 -15.08090 -14.89344 -14.47071 -14.27058 -13.89238 -13.75846 -13.70534 -13.48273 -13.28071 -13.09598 -13.01134 -12.84986 -12.45168 -12.30561 -12.17747 -11.96098 -11.84481 -11.72211 -11.40889 -11.23308 -11.12164 -10.77818 -10.47662 -10.27819 -10.21517 -9.97518 -9.88824 -9.71173 -9.62293 -9.56922 -9.43127 -8.93904 -8.48784 -8.47289 -6.65866 -5.65006 -3.25190 0.85472 1.08517 2.67786 3.01075 3.36725 3.45754 3.48212 3.56720 3.68796 4.11923 4.36248 4.48305 4.52080 4.63973 4.67447 4.76456 4.80689 4.89780 4.97851 5.06943 5.15551 5.20880 5.31350 5.32152 5.41025 5.46614 5.51483 5.55145 5.58680 5.62941 5.70100 5.77734 5.86204 5.88417 5.93374 5.95884 6.07244 6.13797 6.23006 6.40586 6.46545 6.52722 6.58854 6.65787 6.79047 6.85204 7.30003 7.62184 7.81688 7.84475 7.91121 8.25540 8.50269 9.27191 9.98027 10.26521 11.22262 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.023441 B = 0.002477 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.186725 B =11300.373786 C =11756.101870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.004 3.996 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.267 4.267 8 H 0.067 0.933 9 N -0.586 5.586 10 C 0.157 3.843 11 C -0.122 4.122 12 C -0.081 4.081 13 H 0.098 0.902 14 C 0.110 3.890 15 N -0.616 5.616 16 C 0.542 3.458 17 O -0.534 6.534 18 C -0.059 4.059 19 H 0.114 0.886 20 C -0.105 4.105 21 C -0.076 4.076 22 C -0.147 4.147 23 C -0.066 4.066 24 C -0.174 4.174 25 C 0.103 3.897 26 N -0.464 5.464 27 C 0.145 3.855 28 C 0.104 3.896 29 C -0.098 4.098 30 H 0.076 0.924 31 C 0.177 3.823 32 H 0.252 0.748 33 H 0.080 0.920 34 H 0.019 0.981 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.157 0.843 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.023 0.977 49 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.453 -19.442 9.885 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.195 4.195 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.397 4.397 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.032 3.968 11 C -0.160 4.160 12 C -0.100 4.100 13 H 0.116 0.884 14 C -0.012 4.012 15 N -0.350 5.350 16 C 0.329 3.671 17 O -0.411 6.411 18 C -0.081 4.081 19 H 0.131 0.869 20 C -0.143 4.143 21 C -0.113 4.113 22 C -0.149 4.149 23 C -0.092 4.092 24 C -0.194 4.194 25 C -0.054 4.054 26 N -0.171 5.171 27 C 0.006 3.994 28 C -0.018 4.018 29 C -0.117 4.117 30 H 0.094 0.906 31 C 0.050 3.950 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.174 0.826 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.041 0.959 49 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 6.323 -19.651 9.432 22.695 hybrid contribution 0.913 0.572 0.659 1.263 sum 7.235 -19.079 10.091 22.764 Atomic orbital electron populations 1.70047 1.05486 1.25275 1.52380 1.24902 0.94939 0.98483 1.01206 0.86325 0.79711 0.84132 0.77245 1.20244 1.21873 1.21572 1.19159 0.97079 0.86839 1.36634 0.91501 1.42713 1.43678 1.00677 1.43958 1.20244 0.94373 0.91792 0.90379 1.21667 1.00519 0.96410 0.97356 1.22062 0.97541 0.93144 0.97229 0.88409 1.22407 0.83948 0.95396 0.99461 1.48717 1.08774 1.25462 1.52003 1.19708 0.90255 0.79386 0.77715 1.90699 1.47039 1.49864 1.53459 1.20836 0.95942 0.90484 1.00817 0.86859 1.22296 1.00152 0.98658 0.93209 1.20956 0.99820 0.90058 1.00476 1.21412 1.00062 0.95476 0.97942 1.20961 0.98000 0.91113 0.99130 1.22078 1.00073 1.00296 0.96937 1.22646 0.95108 0.92440 0.95228 1.66800 1.19202 0.99917 1.31208 1.21203 0.92981 0.93827 0.91362 1.22625 0.91309 0.92469 0.95403 1.21758 0.95345 0.98173 0.96451 0.90567 1.19320 0.95131 0.84342 0.96192 0.93757 0.90284 0.96297 0.92348 0.93408 0.91891 0.91488 0.89944 0.88741 0.89343 0.89877 0.84980 0.84563 0.82618 0.90441 0.90879 0.95936 0.96685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 10.89 55.49 0.60 -24.41 16 2 C 0.00 0.12 4.89 -17.43 -0.09 0.03 16 3 Si 0.90 21.22 29.63 -169.99 -5.04 16.18 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.27 -7.11 9.28 -15.06 -0.14 -7.25 16 8 H 0.07 1.76 7.95 -52.49 -0.42 1.34 16 9 N -0.59 -13.92 3.24 -179.38 -0.58 -14.50 16 10 C 0.16 3.58 5.05 -5.91 -0.03 3.55 16 11 C -0.12 -2.16 4.79 -27.50 -0.13 -2.29 16 12 C -0.08 -1.30 3.60 -88.81 -0.32 -1.62 16 13 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 14 C 0.11 1.66 6.25 -2.28 -0.01 1.65 16 15 N -0.62 -9.08 3.34 -169.47 -0.57 -9.65 16 16 C 0.54 8.41 6.85 -10.99 -0.08 8.33 16 17 O -0.53 -10.26 16.64 5.56 0.09 -10.17 16 18 C -0.06 -0.72 2.88 -91.84 -0.26 -0.98 16 19 H 0.11 1.20 6.58 -51.93 -0.34 0.86 16 20 C -0.10 -0.99 6.58 -25.31 -0.17 -1.15 16 21 C -0.08 -0.60 6.76 -26.91 -0.18 -0.78 16 22 C -0.15 -1.54 6.17 -104.19 -0.64 -2.18 16 23 C -0.07 -0.58 10.16 -39.34 -0.40 -0.98 16 24 C -0.17 -1.50 10.12 -39.46 -0.40 -1.90 16 25 C 0.10 1.12 11.18 -17.62 -0.20 0.93 16 26 N -0.46 -6.66 10.24 -9.13 -0.09 -6.76 16 27 C 0.14 1.91 6.14 -81.94 -0.50 1.41 16 28 C 0.10 1.43 5.35 -2.54 -0.01 1.41 16 29 C -0.10 -1.55 2.92 -90.66 -0.26 -1.82 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 C 0.18 3.46 5.74 -6.72 -0.04 3.42 16 32 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.08 2.07 5.83 -51.93 -0.30 1.77 16 34 H 0.02 0.47 8.06 -51.93 -0.42 0.05 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.82 6.69 -51.93 -0.35 0.47 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.02 7.78 -51.93 -0.40 0.61 16 39 H 0.08 0.87 7.91 -51.93 -0.41 0.45 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.08 1.09 7.22 -51.93 -0.37 0.72 16 47 H 0.07 0.85 6.92 -51.93 -0.36 0.49 16 48 H 0.02 0.47 8.13 -51.93 -0.42 0.05 16 49 H 0.02 0.29 7.80 -51.93 -0.40 -0.11 16 LS Contribution 380.32 15.07 5.73 5.73 Total: -1.00 -33.31 380.32 -11.28 -44.59 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.57 Total: -0.81 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -3.87 Total: -0.22 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.64 Total: -55.31 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.04 Total: 16.18 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.31 -11.28 -44.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088084072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.088 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds