Wall clock time and date at job start Wed Apr 1 2020 00:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00290 * 2 1 4 4 H 1.48501 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47004 * 299.99879 * 3 2 1 6 6 H 1.48504 * 109.46878 * 60.00087 * 3 2 1 7 7 C 1.38819 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99823 * 153.63815 * 7 2 1 9 9 N 1.36932 * 119.99944 * 333.63851 * 7 2 1 10 10 C 1.44347 * 116.42886 * 335.55506 * 9 7 2 11 11 C 1.51579 * 113.01637 * 188.02556 * 10 9 7 12 12 C 1.52909 * 111.66252 * 320.12650 * 11 10 9 13 13 H 1.08995 * 112.47249 * 293.92824 * 12 11 10 14 14 C 1.55414 * 106.56456 * 169.88286 * 12 11 10 15 15 N 1.47379 * 106.74220 * 270.27923 * 14 12 11 16 16 C 1.34774 * 125.74240 * 179.02651 * 15 14 12 17 17 O 1.21280 * 120.00194 * 5.21984 * 16 15 14 18 18 C 1.50699 * 120.00037 * 185.21210 * 16 15 14 19 19 H 1.08997 * 110.34104 * 330.39080 * 18 16 15 20 20 C 1.54334 * 110.29202 * 92.49279 * 18 16 15 21 21 C 1.54371 * 102.39394 * 145.27097 * 20 18 16 22 22 C 1.51226 * 105.20387 * 333.65550 * 21 20 18 23 23 C 1.38540 * 130.86431 * 197.11003 * 22 21 20 24 24 C 1.38580 * 118.62962 * 180.02562 * 23 22 21 25 25 C 1.38230 * 118.98964 * 0.02648 * 24 23 22 26 26 N 1.31689 * 120.79793 * 0.02562 * 25 24 23 27 27 C 1.32298 * 122.03363 * 0.02562 * 26 25 24 28 28 C 1.47937 * 108.51334 * 359.29585 * 15 14 12 29 29 C 1.54097 * 110.27051 * 60.57433 * 12 11 10 30 30 H 1.08995 * 109.18887 * 187.76338 * 29 12 11 31 31 C 1.43979 * 116.42186 * 155.53623 * 9 7 2 32 32 H 0.97003 * 119.99263 * 0.02562 * 1 2 3 33 33 H 1.09001 * 108.77586 * 67.12002 * 10 9 7 34 34 H 1.08998 * 108.77672 * 308.94096 * 10 9 7 35 35 H 1.08998 * 109.03887 * 199.56070 * 11 10 9 36 36 H 1.08997 * 109.03469 * 80.68825 * 11 10 9 37 37 H 1.08996 * 110.00321 * 150.96006 * 14 12 11 38 38 H 1.08997 * 110.04534 * 29.62497 * 14 12 11 39 39 H 1.08993 * 110.82526 * 27.04397 * 20 18 16 40 40 H 1.09006 * 110.82371 * 263.48993 * 20 18 16 41 41 H 1.08992 * 110.31468 * 92.61808 * 21 20 18 42 42 H 1.08996 * 110.31537 * 214.70256 * 21 20 18 43 43 H 1.07998 * 120.65200 * 0.05412 * 23 22 21 44 44 H 1.08001 * 120.50849 * 179.97438 * 24 23 22 45 45 H 1.07991 * 119.60275 * 180.02562 * 25 24 23 46 46 H 1.09006 * 110.56668 * 93.91864 * 28 15 14 47 47 H 1.08998 * 110.56163 * 216.76811 * 28 15 14 48 48 H 1.09002 * 108.11675 * 304.64303 * 31 9 7 49 49 H 1.08996 * 108.11626 * 61.31726 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0060 -1.2508 -0.4159 9 7 1.4323 -2.3266 0.5255 10 6 0.4008 -2.1167 1.5132 11 6 -0.0489 -3.4002 2.1826 12 6 -0.1441 -4.5543 1.1839 13 1 -0.9276 -4.3999 0.4422 14 6 -0.3539 -5.8475 2.0200 15 7 0.9869 -6.3762 2.3279 16 6 1.2499 -7.4809 3.0537 17 8 0.3403 -8.1856 3.4369 18 6 2.6744 -7.8407 3.3891 19 1 3.3486 -7.4840 2.6104 20 6 3.0702 -7.2418 4.7553 21 6 4.0139 -8.3205 5.3290 22 6 3.5828 -9.6135 4.6739 23 6 3.8382 -10.9317 5.0154 24 6 3.3086 -11.9375 4.2227 25 6 2.5469 -11.5921 3.1221 26 7 2.3247 -10.3284 2.8257 27 6 2.8132 -9.3397 3.5565 28 6 1.9955 -5.4865 1.7118 29 6 1.2325 -4.8227 0.5455 30 1 1.1189 -5.5498 -0.2585 31 6 1.9200 -3.5883 0.0323 32 1 -0.4849 0.8401 -0.0004 33 1 -0.4592 -1.6536 1.0294 34 1 0.7791 -1.4369 2.2766 35 1 -1.0271 -3.2409 2.6363 36 1 0.6651 -3.6632 2.9630 37 1 -0.9189 -6.5781 1.4411 38 1 -0.8837 -5.6135 2.9434 39 1 2.1942 -7.1154 5.3914 40 1 3.5963 -6.2959 4.6261 41 1 5.0486 -8.0930 5.0728 42 1 3.8985 -8.3876 6.4108 43 1 4.4373 -11.1699 5.8818 44 1 3.4889 -12.9754 4.4606 45 1 2.1291 -12.3679 2.4978 46 1 2.3331 -4.7368 2.4275 47 1 2.8389 -6.0661 1.3365 48 1 1.8234 -3.5881 -1.0534 49 1 2.9799 -3.6606 0.2760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088084072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:31 Heat of formation + Delta-G solvation = 13.721652 kcal Electronic energy + Delta-G solvation = -30133.992394 eV Core-core repulsion = 26253.508159 eV Total energy + Delta-G solvation = -3880.484234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.13021 -41.22114 -39.61489 -37.31667 -37.00649 -34.26162 -33.62387 -33.11006 -31.99817 -30.47606 -29.77562 -28.76148 -27.09814 -25.30825 -24.48422 -23.77469 -23.42883 -22.65877 -22.16364 -20.19721 -19.40889 -18.95830 -18.34565 -17.61200 -17.24831 -16.98980 -16.89679 -16.54683 -15.88616 -15.72281 -15.71302 -15.29964 -15.19177 -14.69228 -14.61247 -14.52589 -14.21045 -14.19156 -13.84185 -13.71847 -13.50675 -13.36536 -13.03634 -12.93330 -12.84512 -12.69727 -12.60950 -12.52586 -12.16565 -12.08606 -12.00021 -11.78903 -11.48991 -11.26306 -11.21874 -10.91657 -10.67038 -10.48368 -10.22080 -9.71497 -9.67495 -8.65604 -7.67023 -5.32191 0.11934 0.38247 1.47316 1.51034 1.53524 1.60910 1.88752 2.54406 2.80137 2.92066 3.24619 3.32930 3.40550 3.47530 3.69220 3.77985 3.82008 3.85908 3.97460 4.05150 4.09131 4.15236 4.25023 4.32922 4.44477 4.45633 4.50405 4.54888 4.62419 4.64486 4.68588 4.74021 4.81274 4.92726 4.96095 5.00198 5.00876 5.05380 5.08964 5.12719 5.21844 5.22090 5.28474 5.31312 5.34434 5.45708 5.74103 5.79324 5.97759 6.45005 6.46820 7.06202 7.10058 7.24800 8.08966 8.26796 9.15786 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.023441 B = 0.002477 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.186725 B =11300.373786 C =11756.101870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.047 4.047 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.278 4.278 8 H 0.067 0.933 9 N -0.597 5.597 10 C 0.166 3.834 11 C -0.109 4.109 12 C -0.077 4.077 13 H 0.091 0.909 14 C 0.117 3.883 15 N -0.615 5.615 16 C 0.540 3.460 17 O -0.578 6.578 18 C -0.057 4.057 19 H 0.127 0.873 20 C -0.102 4.102 21 C -0.069 4.069 22 C -0.151 4.151 23 C -0.070 4.070 24 C -0.164 4.164 25 C 0.079 3.921 26 N -0.510 5.510 27 C 0.105 3.895 28 C 0.113 3.887 29 C -0.095 4.095 30 H 0.090 0.910 31 C 0.176 3.824 32 H 0.248 0.752 33 H 0.044 0.956 34 H -0.007 1.007 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.166 0.834 44 H 0.171 0.829 45 H 0.171 0.829 46 H 0.079 0.921 47 H 0.100 0.900 48 H 0.008 0.992 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.968 -21.014 11.386 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.244 4.244 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.409 4.409 8 H 0.085 0.915 9 N -0.321 5.321 10 C 0.041 3.959 11 C -0.147 4.147 12 C -0.096 4.096 13 H 0.109 0.891 14 C -0.005 4.005 15 N -0.348 5.348 16 C 0.329 3.671 17 O -0.458 6.458 18 C -0.079 4.079 19 H 0.145 0.855 20 C -0.140 4.140 21 C -0.106 4.106 22 C -0.153 4.153 23 C -0.096 4.096 24 C -0.184 4.184 25 C -0.078 4.078 26 N -0.218 5.218 27 C -0.032 4.032 28 C -0.008 4.008 29 C -0.114 4.114 30 H 0.108 0.892 31 C 0.050 3.950 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.011 0.989 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.118 0.882 43 H 0.184 0.816 44 H 0.188 0.812 45 H 0.188 0.812 46 H 0.098 0.902 47 H 0.119 0.881 48 H 0.026 0.974 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.872 -21.230 10.922 25.470 hybrid contribution 0.120 0.983 0.152 1.002 sum 8.992 -20.247 11.075 24.768 Atomic orbital electron populations 1.70208 1.06736 1.25537 1.53844 1.25624 0.95648 1.01353 1.01725 0.85373 0.79044 0.80387 0.76651 1.19067 1.22146 1.21870 1.19481 0.97223 0.88142 1.36019 0.91480 1.42950 1.43518 1.01600 1.44020 1.19973 0.92737 0.93742 0.89461 1.21504 1.01162 0.94503 0.97495 1.21961 0.97769 0.92971 0.96876 0.89103 1.22250 0.84560 0.94568 0.99143 1.48766 1.08689 1.25478 1.51849 1.20376 0.91436 0.78572 0.76701 1.90669 1.48729 1.51195 1.55185 1.20959 0.93466 0.90792 1.02663 0.85504 1.22358 1.00140 1.00130 0.91390 1.21017 1.00412 0.88028 1.01115 1.21785 0.99286 0.97193 0.97069 1.21434 0.97778 0.90439 0.99927 1.22466 0.98248 1.02134 0.95515 1.23064 0.96107 0.91916 0.96722 1.66713 1.20780 1.01401 1.32944 1.21474 0.94833 0.93972 0.92968 1.22595 0.91362 0.92519 0.94354 1.21659 0.95076 0.96867 0.97823 0.89216 1.19403 0.96105 0.84144 0.95357 0.94208 0.93825 0.98924 0.91328 0.92237 0.92024 0.91513 0.91548 0.86543 0.87020 0.88196 0.81622 0.81162 0.81200 0.90238 0.88140 0.97400 0.95186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.16 10.89 21.65 0.24 -52.92 16 2 C -0.05 -2.56 4.89 84.86 0.42 -2.15 16 3 Si 0.96 44.10 29.63 68.60 2.03 46.13 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.28 -14.89 9.28 84.04 0.78 -14.11 16 8 H 0.07 3.52 7.95 -2.91 -0.02 3.49 16 9 N -0.60 -28.52 3.24 -721.43 -2.34 -30.86 16 10 C 0.17 7.75 5.05 86.31 0.44 8.18 16 11 C -0.11 -3.83 4.79 30.10 0.14 -3.68 16 12 C -0.08 -2.43 3.60 -9.62 -0.03 -2.46 16 13 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 14 C 0.12 3.46 6.25 87.04 0.54 4.00 16 15 N -0.61 -17.30 3.34 -808.47 -2.70 -20.00 16 16 C 0.54 16.35 6.85 87.66 0.60 16.95 16 17 O -0.58 -22.46 16.64 -3.03 -0.05 -22.51 16 18 C -0.06 -1.30 2.88 -11.59 -0.03 -1.33 16 19 H 0.13 2.40 6.58 -2.39 -0.02 2.38 16 20 C -0.10 -1.68 6.58 31.51 0.21 -1.47 16 21 C -0.07 -0.86 6.76 30.48 0.21 -0.65 16 22 C -0.15 -2.82 6.17 -19.58 -0.12 -2.94 16 23 C -0.07 -1.02 10.16 22.42 0.23 -0.79 16 24 C -0.16 -2.41 10.12 22.35 0.23 -2.18 16 25 C 0.08 1.65 11.18 84.71 0.95 2.60 16 26 N -0.51 -14.58 10.24 -182.80 -1.87 -16.45 16 27 C 0.11 2.68 6.14 42.78 0.26 2.94 16 28 C 0.11 2.84 5.35 86.57 0.46 3.30 16 29 C -0.09 -2.88 2.92 -10.82 -0.03 -2.91 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 C 0.18 6.73 5.74 85.98 0.49 7.22 16 32 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.04 2.40 5.83 -2.39 -0.01 2.38 16 34 H -0.01 -0.37 8.06 -2.39 -0.02 -0.39 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 36 H 0.06 1.96 6.69 -2.39 -0.02 1.95 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 1.98 7.78 -2.39 -0.02 1.96 16 39 H 0.07 1.30 7.91 -2.39 -0.02 1.28 16 40 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 44 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 45 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 46 H 0.08 2.01 7.22 -2.38 -0.02 2.00 16 47 H 0.10 2.01 6.92 -2.39 -0.02 2.00 16 48 H 0.01 0.33 8.13 -2.39 -0.02 0.31 16 49 H 0.03 1.08 7.80 -2.39 -0.02 1.07 16 Total: -1.00 -75.35 380.32 1.99 -73.36 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.95 Total: 12.73 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 5.73 Total: 10.53 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -6.67 Total: -120.23 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.05 Total: -22.51 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -75.35 1.99 -73.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088084072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.082 kcal (2) G-P(sol) polarization free energy of solvation -75.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds