Wall clock time and date at job start Wed Apr 1 2020 00:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99862 * 2 1 4 4 H 1.48503 * 109.46978 * 239.99507 * 3 2 1 5 5 H 1.48496 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47107 * 119.99714 * 3 2 1 7 7 C 1.38816 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99347 * 155.11022 * 7 2 1 9 9 N 1.36932 * 120.00279 * 335.11092 * 7 2 1 10 10 C 1.44329 * 116.35220 * 332.51007 * 9 7 2 11 11 C 1.51609 * 113.10945 * 187.24020 * 10 9 7 12 12 C 1.52886 * 111.55387 * 320.92482 * 11 10 9 13 13 H 1.08999 * 112.87943 * 294.20686 * 12 11 10 14 14 C 1.56217 * 106.67630 * 168.35670 * 12 11 10 15 15 N 1.47754 * 103.99410 * 286.50704 * 14 12 11 16 16 C 1.34781 * 125.82019 * 154.03678 * 15 14 12 17 17 O 1.21275 * 119.99641 * 359.71723 * 16 15 14 18 18 C 1.50703 * 119.99948 * 179.97438 * 16 15 14 19 19 H 1.08995 * 110.72870 * 297.77304 * 18 16 15 20 20 C 1.54373 * 110.82036 * 174.14586 * 18 16 15 21 21 C 1.51215 * 105.11847 * 215.48930 * 20 18 16 22 22 C 1.38745 * 130.69405 * 197.10015 * 21 20 18 23 23 C 1.38570 * 118.56021 * 180.02562 * 22 21 20 24 24 C 1.38224 * 118.98980 * 359.97438 * 23 22 21 25 25 N 1.31683 * 120.80256 * 0.04010 * 24 23 22 26 26 C 1.32302 * 122.02965 * 359.97438 * 25 24 23 27 27 C 1.51480 * 130.14077 * 179.97438 * 26 25 24 28 28 C 1.47621 * 108.36166 * 333.77379 * 15 14 12 29 29 C 1.53569 * 106.34303 * 0.87792 * 28 15 14 30 30 H 1.09003 * 108.70610 * 269.69108 * 29 28 15 31 31 C 1.42918 * 116.57118 * 152.57181 * 9 7 2 32 32 H 0.96999 * 119.99810 * 0.02562 * 1 2 3 33 33 H 1.08994 * 108.75517 * 66.30752 * 10 9 7 34 34 H 1.08997 * 108.66077 * 308.10772 * 10 9 7 35 35 H 1.09005 * 109.06073 * 200.38963 * 11 10 9 36 36 H 1.09005 * 109.01099 * 81.42259 * 11 10 9 37 37 H 1.09001 * 110.63272 * 167.85078 * 14 12 11 38 38 H 1.08998 * 110.48479 * 45.09087 * 14 12 11 39 39 H 1.09004 * 110.31335 * 334.40605 * 20 18 16 40 40 H 1.09002 * 110.30821 * 96.57483 * 20 18 16 41 41 H 1.08009 * 120.71713 * 0.02651 * 22 21 20 42 42 H 1.07996 * 120.50621 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.60392 * 180.02562 * 24 23 22 44 44 H 1.09004 * 110.29404 * 43.87794 * 27 26 25 45 45 H 1.08994 * 110.38013 * 281.78970 * 27 26 25 46 46 H 1.08993 * 110.08216 * 120.09940 * 28 15 14 47 47 H 1.09006 * 110.07753 * 241.59963 * 28 15 14 48 48 H 1.09000 * 107.73113 * 60.74670 * 31 9 7 49 49 H 1.08999 * 107.87609 * 304.55547 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0151 -1.2457 -0.3931 9 7 1.4210 -2.3328 0.5001 10 6 0.4155 -2.1355 1.5165 11 6 -0.0622 -3.4320 2.1406 12 6 -0.1931 -4.5425 1.0979 13 1 -0.9726 -4.3435 0.3624 14 6 -0.3920 -5.8764 1.8862 15 7 0.9450 -6.1634 2.4458 16 6 1.1972 -6.8849 3.5560 17 8 0.2800 -7.3593 4.1921 18 6 2.6184 -7.0971 4.0101 19 1 3.1854 -7.6469 3.2589 20 6 2.6567 -7.8224 5.3723 21 6 3.8388 -7.2267 6.1032 22 6 4.5437 -7.6839 7.2074 23 6 5.6031 -6.9247 7.6779 24 6 5.9194 -5.7437 7.0330 25 7 5.2281 -5.3403 5.9873 26 6 4.2101 -6.0363 5.5082 27 6 3.2987 -5.7502 4.3326 28 6 1.9580 -5.5307 1.5782 29 6 1.1841 -4.8154 0.4611 30 1 1.0537 -5.5066 -0.3717 31 6 1.8682 -3.5785 -0.0392 32 1 -0.4850 0.8401 -0.0004 33 1 -0.4385 -1.6259 1.0704 34 1 0.8311 -1.5018 2.2999 35 1 -1.0330 -3.2658 2.6075 36 1 0.6513 -3.7427 2.9039 37 1 -0.7046 -6.6763 1.2149 38 1 -1.1199 -5.7418 2.6862 39 1 1.7364 -7.6364 5.9261 40 1 2.8018 -8.8929 5.2270 41 1 4.2725 -8.6115 7.6897 42 1 6.1735 -7.2511 8.5349 43 1 6.7435 -5.1444 7.3910 44 1 3.8809 -5.4058 3.4779 45 1 2.5508 -5.0054 4.6046 46 1 2.5423 -4.8096 2.1495 47 1 2.6138 -6.2905 1.1530 48 1 2.9332 -3.6695 0.1743 49 1 1.7467 -3.5373 -1.1216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088182736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:04 Heat of formation + Delta-G solvation = 32.685463 kcal Electronic energy + Delta-G solvation = -30410.816795 eV Core-core repulsion = 26531.154893 eV Total energy + Delta-G solvation = -3879.661902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.21503 -40.22131 -38.55714 -36.11030 -35.67211 -32.92459 -32.56352 -31.58490 -30.50967 -29.72330 -28.17524 -27.68755 -25.74047 -24.55868 -23.31860 -22.26977 -22.03317 -21.62521 -21.09432 -19.12920 -17.93412 -17.37430 -17.00081 -16.78331 -16.62765 -15.81327 -15.67601 -15.07546 -14.87740 -14.43672 -14.37746 -13.94830 -13.80011 -13.55243 -13.34271 -13.15750 -13.09203 -12.96997 -12.87322 -12.64547 -12.34588 -12.27613 -11.94955 -11.74818 -11.59319 -11.43617 -11.26231 -11.12341 -10.74066 -10.56343 -10.29093 -10.20619 -9.98130 -9.91117 -9.73741 -9.61275 -9.57014 -9.47174 -8.91858 -8.58889 -8.44811 -6.60979 -5.63099 -3.28330 0.87251 1.06675 2.55653 2.94098 3.39427 3.45706 3.48711 3.55324 3.71324 4.10791 4.40972 4.47468 4.53159 4.65291 4.68679 4.74330 4.83160 4.92721 4.98486 5.04884 5.13284 5.31734 5.33757 5.38135 5.45953 5.49609 5.54360 5.57319 5.58983 5.69900 5.77471 5.81440 5.83951 5.91667 5.93237 5.98782 6.00128 6.16295 6.24529 6.31672 6.48076 6.54388 6.59796 6.67944 6.78550 6.85672 7.31155 7.54448 7.81403 7.81488 7.93095 8.12180 8.53779 9.28864 10.00208 10.28029 11.22744 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012008 B = 0.003251 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.190180 B = 8610.055214 C =10325.388194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.008 3.992 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.271 4.271 8 H 0.065 0.935 9 N -0.583 5.583 10 C 0.154 3.846 11 C -0.120 4.120 12 C -0.082 4.082 13 H 0.102 0.898 14 C 0.106 3.894 15 N -0.610 5.610 16 C 0.540 3.460 17 O -0.544 6.544 18 C -0.104 4.104 19 H 0.110 0.890 20 C -0.061 4.061 21 C -0.147 4.147 22 C -0.065 4.065 23 C -0.176 4.176 24 C 0.102 3.898 25 N -0.476 5.476 26 C 0.125 3.875 27 C -0.063 4.063 28 C 0.103 3.897 29 C -0.098 4.098 30 H 0.074 0.926 31 C 0.177 3.823 32 H 0.254 0.746 33 H 0.081 0.919 34 H 0.017 0.983 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.158 0.842 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.011 0.989 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.573 -17.167 10.246 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.192 4.192 3 Si 0.728 3.272 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.401 4.401 8 H 0.083 0.917 9 N -0.307 5.307 10 C 0.029 3.971 11 C -0.158 4.158 12 C -0.101 4.101 13 H 0.120 0.880 14 C -0.016 4.016 15 N -0.344 5.344 16 C 0.328 3.672 17 O -0.422 6.422 18 C -0.126 4.126 19 H 0.128 0.872 20 C -0.099 4.099 21 C -0.149 4.149 22 C -0.090 4.090 23 C -0.196 4.196 24 C -0.056 4.056 25 N -0.184 5.184 26 C -0.013 4.013 27 C -0.101 4.101 28 C -0.019 4.019 29 C -0.118 4.118 30 H 0.092 0.908 31 C 0.051 3.949 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.102 0.898 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.175 0.825 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.029 0.971 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 6.192 -16.611 10.268 20.486 hybrid contribution 0.426 0.142 0.473 0.653 sum 6.619 -16.469 10.741 20.746 Atomic orbital electron populations 1.69986 1.05513 1.25538 1.52104 1.24958 0.94939 0.98530 1.00776 0.86434 0.79196 0.83373 0.78230 1.20817 1.21699 1.21038 1.19067 0.96240 0.86642 1.38103 0.91707 1.42393 1.45422 1.01037 1.41852 1.20262 0.94805 0.92097 0.89937 1.21586 1.00442 0.96617 0.97155 1.22293 0.97127 0.93304 0.97419 0.88022 1.22721 0.84458 0.96969 0.97442 1.48671 1.09055 1.51358 1.25266 1.19792 0.90487 0.77718 0.79229 1.90685 1.46489 1.50339 1.54722 1.21922 0.93993 0.97767 0.98906 0.87154 1.20832 0.96311 0.99672 0.93090 1.21475 0.98413 0.97858 0.97165 1.21049 0.93992 0.99570 0.94431 1.22068 0.98868 0.96805 1.01853 1.22665 0.97772 0.94204 0.90909 1.66873 1.05830 1.33649 1.12046 1.21740 0.92350 0.90979 0.96198 1.20975 0.96740 0.96655 0.95688 1.22360 0.91226 0.96407 0.91926 1.21505 0.95635 0.98091 0.96538 0.90765 1.19120 0.95323 0.84614 0.95878 0.93623 0.90145 0.96522 0.92548 0.93419 0.91675 0.90389 0.88016 0.89839 0.84958 0.84572 0.82528 0.88411 0.88581 0.90272 0.91440 0.97128 0.96020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 10.93 55.49 0.61 -24.53 16 2 C 0.01 0.22 4.94 -17.43 -0.09 0.13 16 3 Si 0.90 21.51 29.62 -169.99 -5.04 16.47 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.27 -7.28 9.25 -15.06 -0.14 -7.42 16 8 H 0.07 1.72 7.94 -52.49 -0.42 1.31 16 9 N -0.58 -13.97 3.19 -180.40 -0.58 -14.55 16 10 C 0.15 3.57 5.14 -5.90 -0.03 3.54 16 11 C -0.12 -2.18 4.98 -27.49 -0.14 -2.31 16 12 C -0.08 -1.28 3.77 -88.34 -0.33 -1.62 16 13 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 14 C 0.11 1.46 6.25 -1.63 -0.01 1.45 16 15 N -0.61 -8.25 2.80 -169.40 -0.47 -8.73 16 16 C 0.54 7.42 7.13 -10.98 -0.08 7.34 16 17 O -0.54 -9.09 15.82 5.56 0.09 -9.00 16 18 C -0.10 -1.14 2.97 -90.37 -0.27 -1.41 16 19 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 20 C -0.06 -0.64 6.06 -26.91 -0.16 -0.80 16 21 C -0.15 -1.61 6.16 -104.21 -0.64 -2.25 16 22 C -0.06 -0.59 10.17 -39.27 -0.40 -0.99 16 23 C -0.18 -1.49 10.12 -39.46 -0.40 -1.89 16 24 C 0.10 1.04 11.18 -17.62 -0.20 0.85 16 25 N -0.48 -6.37 10.35 -9.19 -0.10 -6.46 16 26 C 0.12 1.58 7.32 -82.03 -0.60 0.98 16 27 C -0.06 -0.75 4.93 -26.82 -0.13 -0.88 16 28 C 0.10 1.34 4.73 -3.13 -0.01 1.33 16 29 C -0.10 -1.49 2.71 -91.23 -0.25 -1.74 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 C 0.18 3.47 5.59 -7.44 -0.04 3.42 16 32 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.08 2.13 5.74 -51.93 -0.30 1.83 16 34 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.86 6.77 -51.93 -0.35 0.51 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 39 H 0.10 1.21 7.07 -51.93 -0.37 0.84 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 44 H 0.10 1.13 7.02 -51.93 -0.36 0.76 16 45 H 0.10 1.28 7.88 -51.93 -0.41 0.88 16 46 H 0.08 1.11 5.87 -51.93 -0.31 0.81 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.01 0.21 7.77 -51.93 -0.40 -0.19 16 49 H 0.02 0.45 8.13 -51.93 -0.42 0.03 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -31.88 377.17 -11.26 -43.14 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.53 Total: 0.23 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -3.92 Total: -2.26 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.54 Total: -54.26 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.04 Total: 16.47 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.88 -11.26 -43.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088182736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.825 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds