Wall clock time and date at job start Wed Apr 1 2020 01:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99942 * 2 1 4 4 H 1.48494 * 109.47069 * 274.87000 * 3 2 1 5 5 H 1.48493 * 109.47158 * 34.87106 * 3 2 1 6 6 H 1.48500 * 109.47028 * 154.87203 * 3 2 1 7 7 C 1.38810 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00013 * 155.33059 * 7 2 1 9 9 N 1.36942 * 120.00340 * 335.33315 * 7 2 1 10 10 C 1.44323 * 116.34991 * 332.34526 * 9 7 2 11 11 C 1.51604 * 113.11056 * 187.25637 * 10 9 7 12 12 C 1.52872 * 111.55826 * 320.91761 * 11 10 9 13 13 H 1.09002 * 112.86050 * 294.18857 * 12 11 10 14 14 C 1.56203 * 106.67517 * 168.35235 * 12 11 10 15 15 N 1.47761 * 104.00596 * 286.46446 * 14 12 11 16 16 C 1.34770 * 125.82169 * 154.06303 * 15 14 12 17 17 O 1.21510 * 120.00081 * 359.70788 * 16 15 14 18 18 C 1.48170 * 120.00346 * 179.71710 * 16 15 14 19 19 C 1.39302 * 119.72904 * 179.97438 * 18 16 15 20 20 C 1.38585 * 119.06294 * 179.97438 * 19 18 16 21 21 C 1.38624 * 118.48735 * 0.02562 * 20 19 18 22 22 C 1.50705 * 120.32348 * 179.97438 * 21 20 19 23 23 C 1.53000 * 117.49781 * 171.25274 * 22 21 20 24 24 C 1.53005 * 117.49841 * 239.91403 * 22 21 20 25 25 C 1.38559 * 119.35542 * 0.25129 * 21 20 19 26 26 N 1.31525 * 120.89907 * 359.49887 * 25 21 20 27 27 C 1.47626 * 108.35756 * 333.79919 * 15 14 12 28 28 C 1.53562 * 106.34237 * 0.86083 * 27 15 14 29 29 H 1.08998 * 108.71479 * 270.18901 * 28 27 15 30 30 C 1.43993 * 116.35686 * 152.32744 * 9 7 2 31 31 H 0.96995 * 120.00479 * 0.02562 * 1 2 3 32 32 H 1.08998 * 108.76243 * 308.19675 * 10 9 7 33 33 H 1.09005 * 108.75535 * 66.32480 * 10 9 7 34 34 H 1.09002 * 109.06630 * 81.46063 * 11 10 9 35 35 H 1.09005 * 109.06280 * 200.45775 * 11 10 9 36 36 H 1.08994 * 110.63009 * 167.80640 * 14 12 11 37 37 H 1.09007 * 110.48458 * 45.04411 * 14 12 11 38 38 H 1.08001 * 120.46942 * 359.97438 * 19 18 16 39 39 H 1.08007 * 120.75859 * 179.97438 * 20 19 18 40 40 H 1.08994 * 115.55235 * 25.58121 * 22 21 20 41 41 H 1.08997 * 117.49911 * 215.00022 * 23 22 21 42 42 H 1.09005 * 117.50148 * 0.02562 * 23 22 21 43 43 H 1.09007 * 117.49658 * 359.97283 * 24 22 21 44 44 H 1.08992 * 117.50205 * 144.97365 * 24 22 21 45 45 H 1.07993 * 119.55382 * 179.74632 * 25 21 20 46 46 H 1.09001 * 110.07921 * 120.08835 * 27 15 14 47 47 H 1.09001 * 110.07534 * 241.64507 * 27 15 14 48 48 H 1.09005 * 108.15371 * 60.78233 * 30 9 7 49 49 H 1.08991 * 107.99595 * 304.10205 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3947 2.1058 -1.3950 5 1 1.5029 2.6207 0.8004 6 1 3.5954 1.4126 0.5945 7 6 2.0102 -1.2021 0.0005 8 1 3.0163 -1.2450 -0.3898 9 7 1.4193 -2.3338 0.4960 10 6 0.4130 -2.1387 1.5120 11 6 -0.0664 -3.4366 2.1317 12 6 -0.1974 -4.5438 1.0858 13 1 -0.9765 -4.3417 0.3506 14 6 -0.3980 -5.8797 1.8700 15 7 0.9385 -6.1703 2.4291 16 6 1.1894 -6.8958 3.5368 17 8 0.2698 -7.3721 4.1723 18 6 2.5866 -7.1126 3.9798 19 6 2.8393 -7.8630 5.1259 20 6 4.1514 -8.0575 5.5274 21 6 5.1655 -7.4941 4.7686 22 6 6.6069 -7.6790 5.1677 23 6 7.6787 -7.2093 4.1820 24 6 7.4236 -6.4207 5.4690 25 6 4.8407 -6.7543 3.6430 26 7 3.5869 -6.5893 3.2818 27 6 1.9524 -5.5358 1.5639 28 6 1.1797 -4.8162 0.4489 29 1 1.0411 -5.5071 -0.3827 30 6 1.8713 -3.5848 -0.0554 31 1 -0.4850 0.8400 -0.0004 32 1 0.8263 -1.5067 2.2980 33 1 -0.4402 -1.6270 1.0665 34 1 0.6452 -3.7506 2.8954 35 1 -1.0381 -3.2713 2.5972 36 1 -0.7116 -6.6771 1.1963 37 1 -1.1259 -5.7466 2.6705 38 1 2.0243 -8.2872 5.6935 39 1 4.3787 -8.6343 6.4118 40 1 6.8210 -8.5709 5.7566 41 1 8.5978 -7.7921 4.1224 42 1 7.3413 -6.7661 3.2450 43 1 6.9184 -5.4591 5.3782 44 1 8.1746 -6.4847 6.2563 45 1 5.6280 -6.3105 3.0518 46 1 2.5374 -4.8172 2.1379 47 1 2.6069 -6.2950 1.1357 48 1 2.9364 -3.6834 0.1544 49 1 1.7430 -3.5420 -1.1369 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088186717.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:19 Heat of formation + Delta-G solvation = 67.296758 kcal Electronic energy + Delta-G solvation = -30104.431946 eV Core-core repulsion = 26226.270902 eV Total energy + Delta-G solvation = -3878.161043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.99730 -39.90753 -38.29828 -37.26403 -35.58028 -33.04021 -32.30652 -31.52449 -31.12842 -30.16904 -27.86182 -25.87292 -25.00098 -24.16345 -23.39831 -22.68183 -21.98204 -21.54410 -21.00508 -19.90105 -17.88119 -17.48109 -17.21760 -16.97508 -15.95370 -15.83526 -15.54715 -15.06230 -14.92544 -14.79728 -14.47403 -14.00896 -13.88564 -13.67634 -13.44737 -13.16086 -12.99522 -12.89927 -12.56030 -12.31775 -12.20763 -12.11429 -11.85551 -11.67962 -11.39460 -11.15882 -11.08305 -10.82203 -10.70517 -10.48779 -10.30160 -10.20718 -10.14333 -10.00418 -9.69456 -9.59349 -9.48469 -9.44119 -9.08933 -8.47907 -8.36767 -6.55804 -5.58259 -3.23253 0.43863 1.01045 2.65728 3.00519 3.39486 3.41686 3.47379 3.51173 3.79404 3.91736 4.18023 4.40898 4.47715 4.52656 4.55474 4.61190 4.68250 4.90240 4.94310 4.99837 5.10261 5.22429 5.24846 5.37786 5.44594 5.49183 5.52882 5.59255 5.65554 5.71824 5.73922 5.77172 5.87837 5.92540 5.99275 6.08592 6.13278 6.25865 6.34354 6.42888 6.49461 6.63020 6.67193 6.75843 6.89217 6.94449 7.36278 7.54096 7.64857 7.85404 7.97885 8.19433 8.57720 9.33403 10.04158 10.33676 11.27297 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010937 B = 0.003277 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.401231 B = 8541.956111 C =10416.968657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.006 3.994 3 Si 0.896 3.104 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.267 4.267 8 H 0.064 0.936 9 N -0.585 5.585 10 C 0.157 3.843 11 C -0.120 4.120 12 C -0.082 4.082 13 H 0.101 0.899 14 C 0.105 3.895 15 N -0.593 5.593 16 C 0.581 3.419 17 O -0.546 6.546 18 C 0.079 3.921 19 C -0.108 4.108 20 C -0.079 4.079 21 C -0.084 4.084 22 C -0.121 4.121 23 C -0.173 4.173 24 C -0.166 4.166 25 C 0.096 3.904 26 N -0.441 5.441 27 C 0.129 3.871 28 C -0.106 4.106 29 H 0.070 0.930 30 C 0.178 3.822 31 H 0.252 0.748 32 H 0.015 0.985 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.161 0.839 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.015 0.985 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.446 -17.486 9.302 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.194 4.194 3 Si 0.726 3.274 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.397 4.397 8 H 0.082 0.918 9 N -0.309 5.309 10 C 0.032 3.968 11 C -0.158 4.158 12 C -0.101 4.101 13 H 0.120 0.880 14 C -0.017 4.017 15 N -0.324 5.324 16 C 0.368 3.632 17 O -0.424 6.424 18 C -0.059 4.059 19 C -0.129 4.129 20 C -0.105 4.105 21 C -0.087 4.087 22 C -0.139 4.139 23 C -0.210 4.210 24 C -0.203 4.203 25 C -0.064 4.064 26 N -0.152 5.152 27 C 0.007 3.993 28 C -0.125 4.125 29 H 0.089 0.911 30 C 0.052 3.948 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.135 0.865 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.178 0.822 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.033 0.967 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 9.584 -17.228 8.973 21.660 hybrid contribution 0.749 0.407 0.800 1.169 sum 10.333 -16.821 9.773 22.028 Atomic orbital electron populations 1.69991 1.05493 1.25277 1.52498 1.24954 0.94936 0.98464 1.01054 0.86379 0.79542 0.83920 0.77570 1.21511 1.21587 1.20475 1.19114 0.96059 0.86656 1.37826 0.91785 1.42671 1.45359 1.01057 1.41860 1.20226 0.94699 0.92026 0.89861 1.21579 1.00346 0.96682 0.97197 1.22283 0.97316 0.93125 0.97405 0.88048 1.22775 0.84283 0.97137 0.97504 1.48523 1.09445 1.49698 1.24737 1.17479 0.87009 0.78763 0.79912 1.90760 1.44923 1.51357 1.55360 1.21124 0.93269 0.97503 0.93988 1.22083 0.97813 0.96978 0.96032 1.21379 0.91544 0.98369 0.99230 1.20370 0.94691 0.97701 0.95903 1.20974 0.88261 0.99839 1.04874 1.23116 0.99599 1.03718 0.94581 1.23091 1.02191 0.95387 0.99613 1.22771 0.93326 0.95853 0.94421 1.67925 0.99872 1.17461 1.29927 1.22230 0.89939 0.96320 0.90787 1.21624 0.95704 0.98163 0.97015 0.91121 1.19321 0.95416 0.84486 0.95627 0.93764 0.96700 0.90199 0.93439 0.92627 0.91499 0.90309 0.83429 0.84161 0.86544 0.88057 0.87969 0.88217 0.88122 0.82158 0.90055 0.91057 0.96717 0.95954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 10.92 55.49 0.61 -24.98 16 2 C 0.01 0.15 4.94 -17.43 -0.09 0.07 16 3 Si 0.90 21.70 29.62 -169.99 -5.04 16.67 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.27 -7.33 9.25 -15.06 -0.14 -7.47 16 8 H 0.06 1.74 7.94 -52.49 -0.42 1.32 16 9 N -0.59 -14.59 3.23 -179.58 -0.58 -15.16 16 10 C 0.16 3.78 5.14 -5.91 -0.03 3.75 16 11 C -0.12 -2.33 4.98 -27.50 -0.14 -2.47 16 12 C -0.08 -1.39 3.77 -88.36 -0.33 -1.73 16 13 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 14 C 0.10 1.61 6.25 -1.63 -0.01 1.60 16 15 N -0.59 -9.58 2.80 -170.39 -0.48 -10.06 16 16 C 0.58 9.66 7.85 -12.18 -0.10 9.57 16 17 O -0.55 -10.13 16.58 5.36 0.09 -10.04 16 18 C 0.08 1.14 6.72 -83.01 -0.56 0.58 16 19 C -0.11 -1.27 9.63 -39.06 -0.38 -1.65 16 20 C -0.08 -0.73 9.88 -39.31 -0.39 -1.12 16 21 C -0.08 -0.78 5.63 -104.36 -0.59 -1.37 16 22 C -0.12 -0.82 6.06 -91.77 -0.56 -1.37 16 23 C -0.17 -1.04 9.87 -26.69 -0.26 -1.30 16 24 C -0.17 -1.06 10.17 -26.69 -0.27 -1.33 16 25 C 0.10 1.05 10.46 -17.56 -0.18 0.86 16 26 N -0.44 -6.04 6.90 -9.80 -0.07 -6.11 16 27 C 0.13 2.06 4.06 -3.13 -0.01 2.04 16 28 C -0.11 -1.79 2.68 -91.23 -0.24 -2.03 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 C 0.18 3.69 5.67 -6.88 -0.04 3.65 16 31 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.01 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.08 2.18 5.74 -51.93 -0.30 1.88 16 34 H 0.05 0.94 6.77 -51.93 -0.35 0.59 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.23 7.93 -51.92 -0.41 0.82 16 38 H 0.15 1.63 7.64 -52.49 -0.40 1.23 16 39 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.62 6.20 -51.93 -0.32 0.30 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.16 1.44 6.04 -52.49 -0.32 1.12 16 46 H 0.08 1.45 7.16 -51.93 -0.37 1.08 16 47 H 0.07 1.06 7.54 -51.93 -0.39 0.67 16 48 H 0.02 0.31 7.78 -51.93 -0.40 -0.09 16 49 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -31.86 382.91 -11.48 -43.33 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.47 Total: 0.28 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -4.31 Total: 0.30 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.52 Total: -56.31 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.04 Total: 16.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.86 -11.48 -43.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088186717.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.631 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds