Wall clock time and date at job start Wed Apr 1 2020 01:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00134 * 2 1 4 4 H 1.48501 * 109.47134 * 269.99982 * 3 2 1 5 5 H 1.48494 * 109.46943 * 29.99992 * 3 2 1 6 6 H 1.48503 * 109.47140 * 150.00043 * 3 2 1 7 7 C 1.38817 * 119.99530 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00392 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99549 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.57295 * 324.84214 * 10 9 7 12 12 C 1.53797 * 109.52755 * 204.68566 * 10 9 7 13 13 C 1.52444 * 109.42592 * 162.21949 * 12 10 9 14 14 C 1.53971 * 110.73292 * 113.73064 * 13 12 10 15 15 C 1.52885 * 109.71408 * 315.64851 * 14 13 12 16 16 C 1.53045 * 109.24555 * 287.12478 * 15 14 13 17 17 N 1.45340 * 108.63185 * 77.97275 * 16 15 14 18 18 C 1.34774 * 120.36022 * 223.25550 * 17 16 15 19 19 O 1.21776 * 120.00207 * 183.90184 * 18 17 16 20 20 C 1.46212 * 119.99586 * 3.90082 * 18 17 16 21 21 C 1.41739 * 126.80124 * 315.93685 * 20 18 17 22 22 C 1.34516 * 107.77664 * 179.80668 * 21 20 18 23 23 N 1.36961 * 109.60235 * 0.37492 * 22 21 20 24 24 C 1.36705 * 131.34682 * 179.90151 * 23 22 21 25 25 C 1.35006 * 120.74699 * 179.68788 * 24 23 22 26 26 C 1.40306 * 120.38441 * 0.02562 * 25 24 23 27 27 C 1.36332 * 119.45776 * 359.97438 * 26 25 24 28 28 C 1.36939 * 108.74055 * 359.61732 * 23 22 21 29 29 C 1.46963 * 119.28540 * 42.97860 * 17 16 15 30 30 H 0.96994 * 120.00016 * 359.97438 * 1 2 3 31 31 H 0.97004 * 120.00466 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.48204 * 282.20882 * 12 10 9 33 33 H 1.09011 * 109.47851 * 42.23364 * 12 10 9 34 34 H 1.09001 * 109.22530 * 234.05398 * 13 12 10 35 35 H 1.08997 * 109.22080 * 353.45172 * 13 12 10 36 36 H 1.09000 * 109.43088 * 75.72591 * 14 13 12 37 37 H 1.08997 * 109.42677 * 195.62904 * 14 13 12 38 38 H 1.09005 * 109.47934 * 47.08857 * 15 14 13 39 39 H 1.08996 * 109.48048 * 167.11370 * 15 14 13 40 40 H 1.09005 * 109.64611 * 318.13403 * 16 15 14 41 41 H 1.09005 * 109.49652 * 197.72589 * 16 15 14 42 42 H 1.08005 * 126.10633 * 0.05318 * 21 20 18 43 43 H 1.08003 * 125.19815 * 179.97438 * 22 21 20 44 44 H 1.07991 * 119.62615 * 359.66904 * 24 23 22 45 45 H 1.07999 * 119.80341 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.26776 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.34145 * 180.02562 * 27 26 25 48 48 H 1.09001 * 109.53779 * 8.53484 * 29 17 16 49 49 H 1.09002 * 109.53504 * 128.69375 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5673 -3.2072 0.5921 12 6 5.5095 -2.2578 0.6070 13 6 6.0964 -3.6045 1.0143 14 6 7.3241 -3.9476 0.1509 15 6 7.0254 -3.6386 -1.3163 16 6 6.0568 -4.6884 -1.8658 17 7 4.7162 -4.3705 -1.4031 18 6 3.9031 -5.3451 -0.9496 19 8 2.7576 -5.0829 -0.6303 20 6 4.3966 -6.7171 -0.8409 21 6 5.1713 -7.4191 -1.7981 22 6 5.4155 -8.6476 -1.3076 23 7 4.8265 -8.7768 -0.0779 24 6 4.7916 -9.8231 0.8013 25 6 4.1406 -9.7137 1.9789 26 6 3.4867 -8.5201 2.3201 27 6 3.5138 -7.4690 1.4523 28 6 4.1959 -7.6018 0.2336 29 6 4.2588 -2.9741 -1.4293 30 1 -0.4850 0.8400 0.0004 31 1 3.8647 -0.3622 0.0007 32 1 6.1582 -1.7870 -0.1318 33 1 5.4312 -1.6152 1.4841 34 1 6.3944 -3.5640 2.0620 35 1 5.3403 -4.3790 0.8859 36 1 8.1766 -3.3535 0.4803 37 1 7.5576 -5.0069 0.2573 38 1 6.5743 -2.6494 -1.3949 39 1 7.9527 -3.6618 -1.8888 40 1 6.3445 -5.6764 -1.5062 41 1 6.0824 -4.6721 -2.9554 42 1 5.5088 -7.0347 -2.7493 43 1 5.9834 -9.4168 -1.8098 44 1 5.2901 -10.7477 0.5508 45 1 4.1224 -10.5500 2.6620 46 1 2.9668 -8.4345 3.2629 47 1 3.0157 -6.5435 1.7006 48 1 4.9889 -2.3613 -1.9581 49 1 3.2966 -2.9152 -1.9381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088345400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:12 Heat of formation + Delta-G solvation = 74.375735 kcal Electronic energy + Delta-G solvation = -31134.270359 eV Core-core repulsion = 27256.416283 eV Total energy + Delta-G solvation = -3877.854076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.41316 -39.97865 -37.31310 -36.68390 -35.03116 -33.73068 -33.08615 -31.97288 -30.23308 -29.97898 -28.61855 -27.18260 -26.14799 -24.04213 -23.77660 -22.79988 -22.16384 -21.45164 -20.63192 -19.71025 -18.74015 -17.61928 -17.44246 -16.62654 -16.32790 -15.86510 -15.73510 -15.54957 -15.26747 -14.64910 -14.44939 -14.39345 -13.95020 -13.85184 -13.55520 -13.22723 -13.01538 -12.75057 -12.55078 -12.47639 -12.27913 -12.00600 -11.77308 -11.72075 -11.56290 -11.40127 -11.28846 -10.91826 -10.77917 -10.67925 -10.45977 -10.31801 -10.18087 -10.12905 -9.81233 -9.42345 -9.28380 -8.93544 -8.77403 -8.10097 -7.44272 -7.11400 -5.62208 -2.98249 0.62839 1.12921 2.41425 2.48182 3.18667 3.39350 3.45707 3.47113 3.52884 3.71936 4.27400 4.58479 4.66195 4.69918 4.72478 4.82770 4.91301 5.01984 5.06642 5.11724 5.27610 5.30378 5.40528 5.48915 5.52196 5.57418 5.63211 5.68193 5.71429 5.75808 5.87028 5.91773 5.99362 6.03285 6.07502 6.11809 6.13767 6.15528 6.22437 6.33394 6.47449 6.53583 6.56588 6.70176 6.72527 6.83574 6.90659 7.07594 7.23175 7.91215 8.20274 8.57391 8.73702 9.35886 10.06695 10.25641 11.56363 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.003605 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.958993 B = 7764.807376 C = 8631.483245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.881 3.119 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.235 4.235 8 H 0.096 0.904 9 N -0.744 5.744 10 C 0.170 3.830 11 H 0.068 0.932 12 C -0.133 4.133 13 C -0.115 4.115 14 C -0.111 4.111 15 C -0.151 4.151 16 C 0.103 3.897 17 N -0.598 5.598 18 C 0.583 3.417 19 O -0.525 6.525 20 C -0.220 4.220 21 C -0.111 4.111 22 C -0.066 4.066 23 N -0.339 5.339 24 C 0.042 3.958 25 C -0.141 4.141 26 C -0.123 4.123 27 C -0.075 4.075 28 C 0.100 3.900 29 C 0.100 3.900 30 H 0.257 0.743 31 H 0.359 0.641 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.153 0.847 43 H 0.171 0.829 44 H 0.161 0.839 45 H 0.146 0.854 46 H 0.137 0.863 47 H 0.150 0.850 48 H 0.070 0.930 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.937 -21.083 -0.210 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.712 3.288 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.365 4.365 8 H 0.114 0.886 9 N -0.386 5.386 10 C 0.060 3.940 11 H 0.086 0.914 12 C -0.171 4.171 13 C -0.153 4.153 14 C -0.149 4.149 15 C -0.189 4.189 16 C -0.021 4.021 17 N -0.332 5.332 18 C 0.371 3.629 19 O -0.402 6.402 20 C -0.230 4.230 21 C -0.133 4.133 22 C -0.192 4.192 23 N -0.003 5.003 24 C -0.078 4.078 25 C -0.161 4.161 26 C -0.144 4.144 27 C -0.094 4.094 28 C -0.008 4.008 29 C -0.024 4.024 30 H 0.067 0.933 31 H 0.192 0.808 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.170 0.830 43 H 0.188 0.812 44 H 0.178 0.822 45 H 0.163 0.837 46 H 0.155 0.845 47 H 0.168 0.832 48 H 0.089 0.911 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.127 -21.221 0.010 27.909 hybrid contribution 0.697 1.140 -0.158 1.346 sum 18.824 -20.081 -0.148 27.525 Atomic orbital electron populations 1.69714 1.05052 1.25463 1.58088 1.24671 0.95180 0.96919 1.02505 0.86596 0.79223 0.85391 0.77619 1.21262 1.21917 1.20405 1.19214 0.80451 0.94957 1.41887 0.88645 1.42763 1.04134 1.01767 1.89981 1.20665 0.90485 0.89397 0.93446 0.91425 1.22127 0.97281 0.96838 1.00856 1.21635 0.97367 0.98052 0.98271 1.21692 0.97782 1.00556 0.94826 1.22275 0.99101 1.01039 0.96448 1.21694 0.82540 0.99868 0.98012 1.47685 1.13876 1.07827 1.63777 1.17067 0.84948 0.83267 0.77595 1.90922 1.17435 1.83043 1.48784 1.19460 1.10859 0.95684 0.96960 1.21032 0.99392 0.93205 0.99689 1.21618 1.09764 1.00910 0.86899 1.41449 1.34574 1.10285 1.14017 1.21616 1.03335 0.91862 0.91013 1.20758 0.99642 0.99557 0.96142 1.21082 1.00273 0.92659 1.00404 1.20809 0.97109 1.00763 0.90706 1.18552 0.99985 0.85786 0.96520 1.22474 1.00134 0.78911 1.00852 0.93265 0.80804 0.91880 0.92000 0.93011 0.91667 0.92555 0.92494 0.89510 0.91510 0.89174 0.92574 0.82974 0.81214 0.82178 0.83670 0.84494 0.83215 0.91131 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.57 13.97 55.49 0.78 -29.80 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.88 22.68 27.74 -169.99 -4.71 17.96 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 7 C -0.24 -6.97 10.39 -15.06 -0.16 -7.12 16 8 H 0.10 3.16 8.06 -52.49 -0.42 2.74 16 9 N -0.74 -18.28 4.93 -53.35 -0.26 -18.55 16 10 C 0.17 3.49 2.40 -67.85 -0.16 3.33 16 11 H 0.07 1.60 6.28 -51.93 -0.33 1.27 16 12 C -0.13 -2.18 4.97 -26.60 -0.13 -2.31 16 13 C -0.12 -1.62 5.40 -26.51 -0.14 -1.77 16 14 C -0.11 -1.24 5.75 -26.28 -0.15 -1.39 16 15 C -0.15 -1.63 5.45 -26.77 -0.15 -1.77 16 16 C 0.10 1.18 4.97 -4.64 -0.02 1.16 16 17 N -0.60 -9.42 1.69 -176.30 -0.30 -9.72 16 18 C 0.58 10.48 5.93 -13.06 -0.08 10.40 16 19 O -0.53 -12.05 16.02 5.12 0.08 -11.97 16 20 C -0.22 -3.24 5.26 -104.46 -0.55 -3.79 16 21 C -0.11 -1.24 8.38 -39.56 -0.33 -1.57 16 22 C -0.07 -0.62 11.53 -16.58 -0.19 -0.82 16 23 N -0.34 -3.66 2.92 -60.81 -0.18 -3.84 16 24 C 0.04 0.34 10.89 -16.53 -0.18 0.16 16 25 C -0.14 -1.09 9.98 -39.95 -0.40 -1.48 16 26 C -0.12 -1.22 10.09 -39.49 -0.40 -1.62 16 27 C -0.08 -1.00 10.06 -39.50 -0.40 -1.39 16 28 C 0.10 1.39 6.72 -83.91 -0.56 0.82 16 29 C 0.10 1.86 4.75 -4.13 -0.02 1.84 16 30 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 31 H 0.36 8.53 5.66 -40.82 -0.23 8.30 16 32 H 0.06 0.93 5.47 -51.93 -0.28 0.65 16 33 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.04 5.38 -51.93 -0.28 0.77 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.60 7.85 -51.93 -0.41 0.20 16 38 H 0.09 1.07 3.35 -51.93 -0.17 0.89 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.96 4.51 -51.93 -0.23 0.73 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.15 1.36 7.30 -52.48 -0.38 0.97 16 43 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.15 0.65 8.06 -52.49 -0.42 0.22 16 46 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 47 H 0.15 2.21 8.06 -52.49 -0.42 1.79 16 48 H 0.07 1.15 6.07 -51.93 -0.32 0.83 16 49 H 0.08 1.78 8.02 -51.93 -0.42 1.37 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -36.95 373.67 -9.95 -46.90 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.87 Total: 10.74 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -4.12 Total: -7.36 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: 0.04 Total: -61.91 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.71 Total: 17.96 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.95 -9.95 -46.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088345400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.281 kcal (2) G-P(sol) polarization free energy of solvation -36.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds