Wall clock time and date at job start Wed Apr 1 2020 01:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00134 * 2 1 4 4 H 1.48501 * 109.47134 * 269.99982 * 3 2 1 5 5 H 1.48494 * 109.46943 * 29.99992 * 3 2 1 6 6 H 1.48503 * 109.47140 * 150.00043 * 3 2 1 7 7 C 1.38817 * 119.99530 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00392 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99549 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.57295 * 324.84214 * 10 9 7 12 12 C 1.53797 * 109.52755 * 204.68566 * 10 9 7 13 13 C 1.52444 * 109.42592 * 162.21949 * 12 10 9 14 14 C 1.53971 * 110.73292 * 113.73064 * 13 12 10 15 15 C 1.52885 * 109.71408 * 315.64851 * 14 13 12 16 16 C 1.53045 * 109.24555 * 287.12478 * 15 14 13 17 17 N 1.45340 * 108.63185 * 77.97275 * 16 15 14 18 18 C 1.34774 * 120.36022 * 223.25550 * 17 16 15 19 19 O 1.21776 * 120.00207 * 183.90184 * 18 17 16 20 20 C 1.46212 * 119.99586 * 3.90082 * 18 17 16 21 21 C 1.41739 * 126.80124 * 315.93685 * 20 18 17 22 22 C 1.34516 * 107.77664 * 179.80668 * 21 20 18 23 23 N 1.36961 * 109.60235 * 0.37492 * 22 21 20 24 24 C 1.36705 * 131.34682 * 179.90151 * 23 22 21 25 25 C 1.35006 * 120.74699 * 179.68788 * 24 23 22 26 26 C 1.40306 * 120.38441 * 0.02562 * 25 24 23 27 27 C 1.36332 * 119.45776 * 359.97438 * 26 25 24 28 28 C 1.36939 * 108.74055 * 359.61732 * 23 22 21 29 29 C 1.46963 * 119.28540 * 42.97860 * 17 16 15 30 30 H 0.96994 * 120.00016 * 359.97438 * 1 2 3 31 31 H 0.97004 * 120.00466 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.48204 * 282.20882 * 12 10 9 33 33 H 1.09011 * 109.47851 * 42.23364 * 12 10 9 34 34 H 1.09001 * 109.22530 * 234.05398 * 13 12 10 35 35 H 1.08997 * 109.22080 * 353.45172 * 13 12 10 36 36 H 1.09000 * 109.43088 * 75.72591 * 14 13 12 37 37 H 1.08997 * 109.42677 * 195.62904 * 14 13 12 38 38 H 1.09005 * 109.47934 * 47.08857 * 15 14 13 39 39 H 1.08996 * 109.48048 * 167.11370 * 15 14 13 40 40 H 1.09005 * 109.64611 * 318.13403 * 16 15 14 41 41 H 1.09005 * 109.49652 * 197.72589 * 16 15 14 42 42 H 1.08005 * 126.10633 * 0.05318 * 21 20 18 43 43 H 1.08003 * 125.19815 * 179.97438 * 22 21 20 44 44 H 1.07991 * 119.62615 * 359.66904 * 24 23 22 45 45 H 1.07999 * 119.80341 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.26776 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.34145 * 180.02562 * 27 26 25 48 48 H 1.09001 * 109.53779 * 8.53484 * 29 17 16 49 49 H 1.09002 * 109.53504 * 128.69375 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5673 -3.2072 0.5921 12 6 5.5095 -2.2578 0.6070 13 6 6.0964 -3.6045 1.0143 14 6 7.3241 -3.9476 0.1509 15 6 7.0254 -3.6386 -1.3163 16 6 6.0568 -4.6884 -1.8658 17 7 4.7162 -4.3705 -1.4031 18 6 3.9031 -5.3451 -0.9496 19 8 2.7576 -5.0829 -0.6303 20 6 4.3966 -6.7171 -0.8409 21 6 5.1713 -7.4191 -1.7981 22 6 5.4155 -8.6476 -1.3076 23 7 4.8265 -8.7768 -0.0779 24 6 4.7916 -9.8231 0.8013 25 6 4.1406 -9.7137 1.9789 26 6 3.4867 -8.5201 2.3201 27 6 3.5138 -7.4690 1.4523 28 6 4.1959 -7.6018 0.2336 29 6 4.2588 -2.9741 -1.4293 30 1 -0.4850 0.8400 0.0004 31 1 3.8647 -0.3622 0.0007 32 1 6.1582 -1.7870 -0.1318 33 1 5.4312 -1.6152 1.4841 34 1 6.3944 -3.5640 2.0620 35 1 5.3403 -4.3790 0.8859 36 1 8.1766 -3.3535 0.4803 37 1 7.5576 -5.0069 0.2573 38 1 6.5743 -2.6494 -1.3949 39 1 7.9527 -3.6618 -1.8888 40 1 6.3445 -5.6764 -1.5062 41 1 6.0824 -4.6721 -2.9554 42 1 5.5088 -7.0347 -2.7493 43 1 5.9834 -9.4168 -1.8098 44 1 5.2901 -10.7477 0.5508 45 1 4.1224 -10.5500 2.6620 46 1 2.9668 -8.4345 3.2629 47 1 3.0157 -6.5435 1.7006 48 1 4.9889 -2.3613 -1.9581 49 1 3.2966 -2.9152 -1.9381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088345400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:11 Heat of formation + Delta-G solvation = 50.235097 kcal Electronic energy + Delta-G solvation = -31135.317175 eV Core-core repulsion = 27256.416283 eV Total energy + Delta-G solvation = -3878.900893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.25576 -41.27862 -38.68656 -37.55523 -36.73785 -35.05469 -34.13297 -33.81779 -31.79009 -31.00229 -29.75980 -28.39106 -27.34864 -25.66152 -24.60336 -24.33787 -23.21610 -22.33421 -22.25077 -20.85872 -19.97574 -19.52963 -18.61212 -17.61520 -17.23204 -17.16121 -16.99959 -16.55427 -16.33808 -16.22425 -15.70789 -15.53644 -15.28172 -15.03312 -14.96681 -14.61411 -14.30794 -14.07386 -13.89436 -13.80329 -13.64086 -13.24484 -13.13647 -12.85671 -12.74989 -12.63134 -12.53759 -12.20853 -12.16394 -12.00198 -11.86840 -11.76511 -11.53631 -11.44468 -11.37678 -11.26720 -11.04844 -10.70626 -9.70353 -9.56337 -9.13978 -8.30412 -8.02198 -5.38191 -0.19624 0.30864 1.34433 1.41161 1.45049 1.48601 1.68775 2.11395 2.34011 2.47839 2.62279 3.27383 3.51827 3.61686 3.80672 3.85476 3.96725 3.97571 3.99973 4.08485 4.10251 4.18049 4.24062 4.25347 4.40026 4.46808 4.53379 4.65292 4.75293 4.75465 4.81776 4.84337 4.90656 4.90870 4.95915 5.04850 5.14052 5.21250 5.23586 5.27829 5.32359 5.39514 5.43963 5.44311 5.57389 5.66219 5.75431 5.82246 5.87846 6.21910 6.37391 6.65415 7.06741 7.40069 7.78952 8.04240 9.20699 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.003605 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.958993 B = 7764.807376 C = 8631.483245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.990 5.990 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.247 1.247 7 C -0.229 4.229 8 H 0.034 0.966 9 N -0.744 5.744 10 C 0.170 3.830 11 H 0.018 0.982 12 C -0.121 4.121 13 C -0.113 4.113 14 C -0.103 4.103 15 C -0.147 4.147 16 C 0.095 3.905 17 N -0.591 5.591 18 C 0.578 3.422 19 O -0.602 6.602 20 C -0.266 4.266 21 C -0.115 4.115 22 C -0.047 4.047 23 N -0.341 5.341 24 C 0.056 3.944 25 C -0.149 4.149 26 C -0.099 4.099 27 C -0.134 4.134 28 C 0.084 3.916 29 C 0.114 3.886 30 H 0.258 0.742 31 H 0.370 0.630 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.173 0.827 43 H 0.220 0.780 44 H 0.213 0.787 45 H 0.189 0.811 46 H 0.152 0.848 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.840 -23.354 -0.944 34.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.259 4.259 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.171 1.171 7 C -0.360 4.360 8 H 0.052 0.948 9 N -0.388 5.388 10 C 0.061 3.939 11 H 0.037 0.963 12 C -0.158 4.158 13 C -0.151 4.151 14 C -0.140 4.140 15 C -0.184 4.184 16 C -0.026 4.026 17 N -0.322 5.322 18 C 0.369 3.631 19 O -0.484 6.484 20 C -0.276 4.276 21 C -0.136 4.136 22 C -0.172 4.172 23 N -0.005 5.005 24 C -0.064 4.064 25 C -0.168 4.168 26 C -0.120 4.120 27 C -0.153 4.153 28 C -0.026 4.026 29 C -0.011 4.011 30 H 0.067 0.933 31 H 0.204 0.796 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.191 0.809 43 H 0.237 0.763 44 H 0.230 0.770 45 H 0.206 0.794 46 H 0.170 0.830 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 24.143 -23.537 -0.754 33.726 hybrid contribution -1.213 1.564 0.169 1.987 sum 22.929 -21.973 -0.585 31.763 Atomic orbital electron populations 1.69949 1.07546 1.26759 1.59763 1.25661 0.96251 1.01687 1.02347 0.85229 0.78567 0.78411 0.78421 1.19790 1.22089 1.17089 1.18916 0.82822 0.92851 1.41429 0.94821 1.42617 1.02239 1.03685 1.90227 1.20745 0.92079 0.86630 0.94430 0.96349 1.22025 0.94527 0.98420 1.00873 1.21595 0.98227 0.95680 0.99643 1.21667 0.96317 1.01666 0.94355 1.22274 1.00183 0.99411 0.96572 1.22082 0.79928 1.01216 0.99394 1.47669 1.15498 1.05994 1.63057 1.17753 0.84102 0.85163 0.76086 1.90872 1.20888 1.84486 1.52189 1.19272 1.14311 0.94376 0.99616 1.21286 0.98833 0.93693 0.99765 1.22344 1.08094 1.00986 0.85745 1.41751 1.34036 1.09750 1.14961 1.22587 1.01624 0.92207 0.89961 1.21251 0.98964 0.99397 0.97221 1.21455 0.98328 0.92484 0.99747 1.20595 1.00735 1.00935 0.93057 1.18556 1.00409 0.87221 0.96375 1.22001 0.98642 0.81566 0.98898 0.93309 0.79644 0.88958 0.92834 0.92392 0.94604 0.90342 0.91397 0.90982 0.87608 0.87687 0.90296 0.80925 0.76312 0.77015 0.79383 0.83012 0.87619 0.87714 0.95729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -68.94 13.97 21.65 0.30 -68.64 16 2 C -0.07 -4.42 5.50 84.86 0.47 -3.96 16 3 Si 0.97 48.16 27.74 68.60 1.90 50.07 16 4 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 6 H -0.25 -10.90 6.52 99.48 0.65 -10.25 16 7 C -0.23 -14.80 10.39 84.03 0.87 -13.93 16 8 H 0.03 2.54 8.06 -2.92 -0.02 2.52 16 9 N -0.74 -38.73 4.93 -322.70 -1.59 -40.32 16 10 C 0.17 7.58 2.40 45.04 0.11 7.68 16 11 H 0.02 1.00 6.28 -2.39 -0.01 0.99 16 12 C -0.12 -3.98 4.97 30.68 0.15 -3.83 16 13 C -0.11 -3.21 5.40 30.74 0.17 -3.05 16 14 C -0.10 -1.98 5.75 30.88 0.18 -1.80 16 15 C -0.15 -2.64 5.45 30.57 0.17 -2.47 16 16 C 0.10 2.03 4.97 86.61 0.43 2.46 16 17 N -0.59 -19.87 1.69 -829.89 -1.40 -21.28 16 18 C 0.58 23.34 5.93 86.31 0.51 23.86 16 19 O -0.60 -32.43 16.02 -4.59 -0.07 -32.51 16 20 C -0.27 -8.36 5.26 -19.76 -0.10 -8.47 16 21 C -0.11 -2.36 8.38 22.28 0.19 -2.17 16 22 C -0.05 -0.71 11.53 83.04 0.96 0.25 16 23 N -0.34 -6.54 2.92 -346.29 -1.01 -7.55 16 24 C 0.06 0.65 10.89 83.19 0.91 1.55 16 25 C -0.15 -1.81 9.98 22.03 0.22 -1.59 16 26 C -0.10 -2.00 10.09 22.33 0.23 -1.77 16 27 C -0.13 -4.05 10.06 22.32 0.22 -3.82 16 28 C 0.08 2.47 6.72 39.43 0.26 2.73 16 29 C 0.11 4.57 4.75 86.07 0.41 4.98 16 30 H 0.26 16.89 8.31 -92.71 -0.77 16.12 16 31 H 0.37 17.59 5.66 -92.71 -0.53 17.07 16 32 H 0.09 2.52 5.47 -2.39 -0.01 2.51 16 33 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.24 5.38 -2.39 -0.01 1.23 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.21 7.85 -2.39 -0.02 1.19 16 38 H 0.07 1.53 3.35 -2.38 -0.01 1.53 16 39 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.11 2.00 4.51 -2.38 -0.01 1.99 16 41 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.17 2.63 7.30 -2.91 -0.02 2.60 16 43 H 0.22 1.03 8.06 -2.91 -0.02 1.01 16 44 H 0.21 0.25 8.06 -2.92 -0.02 0.23 16 45 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 46 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.11 3.96 8.06 -2.91 -0.02 3.94 16 48 H 0.10 3.42 6.07 -2.39 -0.01 3.40 16 49 H 0.02 1.23 8.02 -2.39 -0.02 1.21 16 Total: -1.00 -97.23 373.67 4.86 -92.37 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.40 Total: 31.21 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 6.34 Total: -3.35 kcal Atomic # 7 Polarization: -134.08 SS G_CDS: -3.71 Total: -137.79 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.07 Total: -32.51 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 1.90 Total: 50.07 kcal Total: -97.23 4.86 -92.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088345400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.600 kcal (2) G-P(sol) polarization free energy of solvation -97.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds