Wall clock time and date at job start Wed Apr 1 2020 00:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00234 * 2 1 4 4 H 1.48496 * 109.46802 * 175.60036 * 3 2 1 5 5 H 1.48502 * 109.46748 * 295.59950 * 3 2 1 6 6 H 1.48497 * 109.47023 * 55.59973 * 3 2 1 7 7 C 1.38813 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00001 * 170.95972 * 7 2 1 9 9 N 1.36932 * 120.00048 * 350.95220 * 7 2 1 10 10 C 1.48145 * 127.83977 * 345.26604 * 9 7 2 11 11 C 1.54399 * 104.58459 * 219.56709 * 10 9 7 12 12 H 1.09005 * 111.29562 * 216.07171 * 11 10 9 13 13 C 1.54150 * 104.98741 * 336.02677 * 11 10 9 14 14 H 1.09010 * 111.51441 * 239.87925 * 13 11 10 15 15 C 1.48151 * 127.83619 * 165.23364 * 9 7 2 16 16 C 1.53318 * 109.35492 * 116.83330 * 13 11 10 17 17 H 1.08993 * 110.52894 * 182.22471 * 16 13 11 18 18 C 1.53049 * 108.63250 * 60.20174 * 16 13 11 19 19 C 1.52914 * 109.75990 * 298.91555 * 18 16 13 20 20 C 1.53009 * 109.00244 * 93.61649 * 11 10 9 21 21 H 1.09003 * 110.17031 * 65.59642 * 20 11 10 22 22 C 1.53636 * 109.05602 * 305.21155 * 20 11 10 23 23 N 1.47574 * 106.70378 * 300.06284 * 22 20 11 24 24 C 1.34771 * 122.01382 * 180.30031 * 23 22 20 25 25 O 1.21280 * 120.00235 * 174.96472 * 24 23 22 26 26 C 1.50706 * 119.99944 * 354.97041 * 24 23 22 27 27 C 1.50693 * 109.47118 * 180.99413 * 26 24 23 28 28 C 1.38674 * 120.41481 * 267.69590 * 27 26 24 29 29 C 1.38627 * 118.42084 * 179.78412 * 28 27 26 30 30 C 1.38230 * 119.16034 * 0.51479 * 29 28 27 31 31 N 1.31847 * 120.76281 * 359.72236 * 30 29 28 32 32 C 1.31896 * 121.73001 * 0.02562 * 31 30 29 33 33 H 0.97004 * 119.99451 * 0.02562 * 1 2 3 34 34 H 1.09003 * 110.41529 * 338.34122 * 10 9 7 35 35 H 1.09000 * 110.41940 * 100.66763 * 10 9 7 36 36 H 1.08998 * 110.40528 * 21.73749 * 15 9 7 37 37 H 1.08998 * 110.50943 * 259.36239 * 15 9 7 38 38 H 1.08998 * 109.40714 * 178.81155 * 18 16 13 39 39 H 1.08996 * 109.35461 * 58.98491 * 18 16 13 40 40 H 1.09007 * 109.38094 * 241.27527 * 19 18 16 41 41 H 1.08999 * 109.38238 * 121.49973 * 19 18 16 42 42 H 1.08998 * 110.00405 * 59.36673 * 22 20 11 43 43 H 1.09005 * 110.00059 * 180.76462 * 22 20 11 44 44 H 1.09005 * 109.46434 * 300.99191 * 26 24 23 45 45 H 1.08993 * 109.46907 * 60.98511 * 26 24 23 46 46 H 1.08003 * 120.79425 * 0.02562 * 28 27 26 47 47 H 1.08001 * 120.42520 * 180.21942 * 29 28 27 48 48 H 1.08001 * 119.62174 * 179.70610 * 30 29 28 49 49 H 1.07991 * 119.62146 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7067 1.3483 0.1074 5 1 1.9739 2.3488 -1.2627 6 1 1.8128 2.4419 1.1552 7 6 2.0102 -1.2022 0.0005 8 1 3.0801 -1.2081 -0.1464 9 7 1.3383 -2.3806 0.1876 10 6 -0.0409 -2.5698 0.6942 11 6 0.0481 -3.8094 1.6104 12 1 -0.8539 -4.4176 1.5423 13 6 1.2761 -4.5918 1.1043 14 1 1.0035 -5.5949 0.7762 15 6 1.8254 -3.7555 -0.0715 16 6 2.3352 -4.6467 2.2115 17 1 3.2288 -5.1626 1.8603 18 6 1.7348 -5.3555 3.4279 19 6 0.5259 -4.5707 3.9389 20 6 0.2842 -3.3487 3.0503 21 1 -0.5816 -2.7960 3.4149 22 6 1.5273 -2.4468 3.0909 23 7 2.6575 -3.2599 2.6016 24 6 3.9085 -2.7660 2.5156 25 8 4.8262 -3.4914 2.1956 26 6 4.1670 -1.3122 2.8171 27 6 5.6312 -1.0120 2.6251 28 6 6.5119 -1.1005 3.6926 29 6 7.8508 -0.8197 3.4684 30 6 8.2588 -0.4531 2.1996 31 7 7.3924 -0.3746 1.2090 32 6 6.1122 -0.6393 1.3845 33 1 -0.4849 0.8401 -0.0004 34 1 -0.3594 -1.6974 1.2649 35 1 -0.7277 -2.7539 -0.1320 36 1 2.9151 -3.7778 -0.0773 37 1 1.4335 -4.1275 -1.0182 38 1 2.4848 -5.4203 4.2161 39 1 1.4212 -6.3596 3.1425 40 1 0.7134 -4.2430 4.9615 41 1 -0.3555 -5.2116 3.9204 42 1 1.3820 -1.5822 2.4433 43 1 1.7178 -2.1204 4.1133 44 1 3.5773 -0.6910 2.1429 45 1 3.8845 -1.0991 3.8479 46 1 6.1636 -1.3851 4.6745 47 1 8.5653 -0.8820 4.2759 48 1 9.2994 -0.2281 2.0177 49 1 5.4321 -0.5637 0.5490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089798530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:47 Heat of formation + Delta-G solvation = 33.355494 kcal Electronic energy + Delta-G solvation = -32444.926883 eV Core-core repulsion = 28565.294035 eV Total energy + Delta-G solvation = -3879.632847 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.98544 -39.93905 -38.02646 -35.40696 -33.39954 -32.77345 -32.24608 -31.72536 -31.43920 -29.11719 -27.71307 -26.56054 -25.21411 -24.46502 -23.33306 -22.68944 -21.69233 -20.46089 -20.31789 -19.44066 -17.24174 -16.87695 -16.66558 -16.30701 -16.14051 -15.78999 -15.59311 -15.03369 -14.55416 -14.33045 -13.98694 -13.81068 -13.57172 -13.42695 -13.01214 -12.88223 -12.85310 -12.48440 -12.23175 -12.03595 -11.91821 -11.71127 -11.50295 -11.42531 -11.22704 -11.19635 -11.08103 -10.84406 -10.78631 -10.44246 -10.08634 -9.85723 -9.70286 -9.63607 -9.60368 -9.49933 -9.24936 -9.19137 -8.71535 -8.65411 -7.87900 -6.84892 -5.85051 -3.16786 1.33482 1.50341 3.20689 3.30003 3.39056 3.41434 3.53195 4.08313 4.39640 4.65314 4.86363 4.94279 4.97430 5.01922 5.02680 5.17540 5.24436 5.31994 5.32760 5.42124 5.47975 5.53286 5.57908 5.60200 5.66125 5.72918 5.81312 5.84440 5.96419 6.03333 6.06892 6.14026 6.14710 6.18626 6.25757 6.33906 6.38834 6.46648 6.51095 6.54498 6.61661 6.79100 6.86622 6.88857 6.93691 7.09707 7.30176 7.51893 7.66725 8.06429 8.16688 8.21534 8.76409 9.07619 9.69183 10.50367 11.28033 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.006073 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.889207 B = 4609.593373 C = 6461.335399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.005 4.005 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.212 4.212 8 H 0.072 0.928 9 N -0.587 5.587 10 C 0.160 3.840 11 C -0.103 4.103 12 H 0.065 0.935 13 C -0.111 4.111 14 H 0.073 0.927 15 C 0.133 3.867 16 C 0.155 3.845 17 H 0.093 0.907 18 C -0.125 4.125 19 C -0.111 4.111 20 C -0.084 4.084 21 H 0.080 0.920 22 C 0.114 3.886 23 N -0.580 5.580 24 C 0.538 3.462 25 O -0.560 6.560 26 C -0.104 4.104 27 C -0.102 4.102 28 C -0.068 4.068 29 C -0.177 4.177 30 C 0.087 3.913 31 N -0.485 5.485 32 C 0.119 3.881 33 H 0.253 0.747 34 H 0.090 0.910 35 H 0.016 0.984 36 H 0.045 0.955 37 H 0.018 0.982 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.048 0.952 44 H 0.123 0.877 45 H 0.094 0.906 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.150 0.850 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 -5.791 10.789 12.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.202 4.202 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.340 4.340 8 H 0.090 0.910 9 N -0.310 5.310 10 C 0.034 3.966 11 C -0.124 4.124 12 H 0.084 0.916 13 C -0.132 4.132 14 H 0.092 0.908 15 C 0.006 3.994 16 C 0.051 3.949 17 H 0.111 0.889 18 C -0.163 4.163 19 C -0.149 4.149 20 C -0.102 4.102 21 H 0.098 0.902 22 C -0.008 4.008 23 N -0.312 5.312 24 C 0.326 3.674 25 O -0.439 6.439 26 C -0.145 4.145 27 C -0.105 4.105 28 C -0.094 4.094 29 C -0.197 4.197 30 C -0.070 4.070 31 N -0.193 5.193 32 C -0.038 4.038 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.034 0.966 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.127 0.873 43 H 0.066 0.934 44 H 0.141 0.859 45 H 0.112 0.888 46 H 0.146 0.854 47 H 0.148 0.852 48 H 0.167 0.833 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.626 -5.639 9.763 12.187 hybrid contribution -0.102 0.612 0.753 0.976 sum 4.524 -5.027 10.516 12.503 Atomic orbital electron populations 1.69892 1.04811 1.25057 1.56148 1.24789 0.95492 0.97378 1.02514 0.86395 0.79423 0.84539 0.77708 1.19844 1.21635 1.21540 1.18895 0.90493 0.82237 1.42413 0.91030 1.44852 1.12336 0.99621 1.74224 1.21613 0.86883 0.94114 0.93976 1.22279 0.96281 0.99043 0.94752 0.91642 1.22589 0.95413 0.98680 0.96519 0.90836 1.21626 0.97221 0.86983 0.93568 1.21186 0.97622 0.82479 0.93586 0.88868 1.21831 0.97677 0.98894 0.97914 1.21515 0.97722 0.97123 0.98553 1.21343 0.97571 0.95454 0.95857 0.90195 1.22111 0.84860 0.95909 0.97908 1.48037 1.07261 1.12356 1.63510 1.19964 0.81859 0.88847 0.76703 1.90643 1.43181 1.60456 1.49669 1.20716 0.93292 0.95794 1.04651 1.20408 0.95831 0.99411 0.94828 1.21396 0.93124 0.96039 0.98841 1.22013 0.96423 1.02474 0.98785 1.22684 0.99208 0.96202 0.88909 1.67698 1.03238 1.14140 1.34273 1.22761 0.91773 0.93114 0.96149 0.93680 0.89151 0.96570 0.93614 0.96438 0.92330 0.91452 0.92572 0.92153 0.87317 0.93424 0.85882 0.88816 0.85366 0.85232 0.83254 0.82630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.25 10.82 55.49 0.60 -23.65 16 2 C 0.00 -0.12 5.40 -17.43 -0.09 -0.21 16 3 Si 0.89 20.30 29.56 -169.99 -5.03 15.27 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.21 -5.19 8.40 -15.06 -0.13 -5.31 16 8 H 0.07 1.79 7.84 -52.49 -0.41 1.38 16 9 N -0.59 -13.18 2.02 -168.85 -0.34 -13.52 16 10 C 0.16 3.37 4.67 -2.40 -0.01 3.36 16 11 C -0.10 -1.70 3.17 -89.28 -0.28 -1.98 16 12 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 13 C -0.11 -1.83 3.20 -89.12 -0.29 -2.12 16 14 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 15 C 0.13 2.68 6.34 -2.40 -0.02 2.67 16 16 C 0.15 2.46 2.80 -67.12 -0.19 2.27 16 17 H 0.09 1.63 7.20 -51.93 -0.37 1.25 16 18 C -0.12 -1.61 5.82 -26.75 -0.16 -1.77 16 19 C -0.11 -1.36 5.66 -26.77 -0.15 -1.52 16 20 C -0.08 -1.22 2.71 -90.28 -0.24 -1.46 16 21 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 22 C 0.11 1.85 4.56 -3.12 -0.01 1.83 16 23 N -0.58 -9.83 1.95 -163.80 -0.32 -10.15 16 24 C 0.54 9.89 7.73 -10.98 -0.08 9.81 16 25 O -0.56 -11.91 15.63 5.56 0.09 -11.83 16 26 C -0.10 -1.72 4.80 -29.04 -0.14 -1.86 16 27 C -0.10 -1.71 4.39 -104.49 -0.46 -2.17 16 28 C -0.07 -0.96 9.85 -39.28 -0.39 -1.35 16 29 C -0.18 -2.27 10.11 -39.44 -0.40 -2.67 16 30 C 0.09 1.24 11.18 -17.55 -0.20 1.04 16 31 N -0.49 -8.55 10.36 -13.25 -0.14 -8.69 16 32 C 0.12 2.18 10.87 -17.55 -0.19 1.98 16 33 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.09 2.09 5.60 -51.93 -0.29 1.80 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.99 7.82 -51.93 -0.41 0.58 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.11 2.13 5.18 -51.93 -0.27 1.86 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.12 2.25 7.18 -51.93 -0.37 1.88 16 45 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 46 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 47 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 48 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 49 H 0.16 2.99 8.06 -52.49 -0.42 2.56 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -29.44 374.21 -10.52 -39.97 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.60 Total: 6.42 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -3.43 Total: 0.54 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.20 Total: -56.01 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.44 -10.52 -39.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089798530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.322 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds