Wall clock time and date at job start Wed Apr 1 2020 00:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99995 * 2 1 4 4 H 1.48496 * 109.47391 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47030 * 299.99922 * 3 2 1 6 6 H 1.48502 * 109.47324 * 59.99977 * 3 2 1 7 7 C 1.38815 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00336 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99799 * 359.97438 * 7 2 1 10 10 C 1.49851 * 125.86849 * 180.02562 * 9 7 2 11 11 C 1.49349 * 101.88474 * 203.30803 * 10 9 7 12 12 H 1.09003 * 105.21035 * 63.80180 * 11 10 9 13 13 C 1.56570 * 101.27360 * 315.76653 * 11 10 9 14 14 H 1.08993 * 111.62169 * 291.39271 * 13 11 10 15 15 C 1.49033 * 125.86986 * 359.97029 * 9 7 2 16 16 C 1.52517 * 102.60678 * 171.48730 * 13 11 10 17 17 H 1.08994 * 113.69597 * 209.62379 * 16 13 11 18 18 C 1.56096 * 102.51869 * 85.22727 * 16 13 11 19 19 C 1.53902 * 106.97654 * 322.09690 * 18 16 13 20 20 C 1.49179 * 130.23504 * 191.12380 * 11 10 9 21 21 H 1.08992 * 113.27741 * 330.94048 * 20 11 10 22 22 C 1.56723 * 102.43364 * 208.26684 * 20 11 10 23 23 N 1.49067 * 107.93857 * 337.03110 * 16 13 11 24 24 C 1.34780 * 122.60154 * 254.15621 * 23 16 13 25 25 O 1.21280 * 120.00423 * 359.70652 * 24 23 16 26 26 C 1.50701 * 119.99795 * 179.71328 * 24 23 16 27 27 C 1.50703 * 109.47064 * 179.97438 * 26 24 23 28 28 C 1.38672 * 120.41759 * 269.71910 * 27 26 24 29 29 C 1.38625 * 118.42259 * 179.78105 * 28 27 26 30 30 C 1.38227 * 119.15599 * 0.47430 * 29 28 27 31 31 N 1.31851 * 120.76511 * 359.76701 * 30 29 28 32 32 C 1.31881 * 121.72912 * 0.02562 * 31 30 29 33 33 H 0.96992 * 120.00172 * 359.97438 * 1 2 3 34 34 H 1.09003 * 110.95004 * 85.16162 * 10 9 7 35 35 H 1.08997 * 110.94815 * 321.45817 * 10 9 7 36 36 H 1.08999 * 110.30867 * 68.78719 * 15 9 7 37 37 H 1.08999 * 110.40097 * 306.65230 * 15 9 7 38 38 H 1.09002 * 109.95049 * 81.45451 * 18 16 13 39 39 H 1.08996 * 109.95047 * 202.71806 * 18 16 13 40 40 H 1.08994 * 109.75884 * 205.76419 * 19 18 16 41 41 H 1.08997 * 109.35814 * 85.45989 * 19 18 16 42 42 H 1.09002 * 110.69825 * 205.73054 * 22 20 11 43 43 H 1.09001 * 110.73490 * 82.67439 * 22 20 11 44 44 H 1.09002 * 109.47060 * 299.99722 * 26 24 23 45 45 H 1.09001 * 109.47380 * 59.99809 * 26 24 23 46 46 H 1.08010 * 120.79118 * 0.02562 * 28 27 26 47 47 H 1.08005 * 120.42346 * 180.21973 * 29 28 27 48 48 H 1.08009 * 119.61555 * 179.74340 * 30 29 28 49 49 H 1.08001 * 119.61772 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.9383 -3.7556 -0.0005 11 6 0.8391 -4.5851 -0.5788 12 1 0.7035 -4.2124 -1.5941 13 6 -0.4030 -4.0309 0.1968 14 1 -0.3699 -4.2996 1.2525 15 6 -0.1569 -2.5405 0.0006 16 6 -1.5700 -4.6996 -0.5224 17 1 -2.4873 -4.1112 -0.5098 18 6 -1.6692 -6.0782 0.2030 19 6 -0.2294 -6.5383 0.4926 20 6 0.6905 -6.0673 -0.6591 21 1 1.6437 -6.5936 -0.7088 22 6 -0.1921 -6.2490 -1.9413 23 7 -1.1117 -5.0755 -1.8902 24 6 -1.4941 -4.4037 -2.9943 25 8 -2.2441 -3.4555 -2.8980 26 6 -0.9897 -4.8309 -4.3486 27 6 -1.5620 -3.9234 -5.4070 28 6 -2.7646 -4.2346 -6.0233 29 6 -3.2552 -3.3684 -6.9879 30 6 -2.5296 -2.2364 -7.3082 31 7 -1.3867 -1.9747 -6.7049 32 6 -0.8919 -2.7739 -5.7799 33 1 -0.4850 0.8400 0.0004 34 1 2.1760 -4.0762 1.0138 35 1 2.8242 -3.7858 -0.6348 36 1 -0.5718 -2.2108 -0.9518 37 1 -0.5965 -1.9731 0.8209 38 1 -2.2194 -5.9680 1.1376 39 1 -2.1689 -6.8020 -0.4407 40 1 -0.1973 -7.6254 0.5637 41 1 0.1081 -6.0998 1.4316 42 1 -0.7544 -7.1816 -1.8930 43 1 0.4228 -6.2178 -2.8407 44 1 0.0985 -4.7699 -4.3669 45 1 -1.2993 -5.8574 -4.5445 46 1 -3.3081 -5.1287 -5.7552 47 1 -4.1905 -3.5775 -7.4859 48 1 -2.9029 -1.5585 -8.0617 49 1 0.0471 -2.5263 -5.3073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089798531.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:50 Heat of formation + Delta-G solvation = 78.605113 kcal Electronic energy + Delta-G solvation = -31324.722346 eV Core-core repulsion = 27447.051670 eV Total energy + Delta-G solvation = -3877.670676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.60625 -40.15971 -38.27787 -35.86718 -33.59794 -32.75276 -32.00950 -31.82261 -31.38936 -28.92661 -27.98667 -26.81016 -25.11931 -24.64819 -23.52855 -22.65939 -21.71376 -20.89746 -19.94017 -19.58757 -17.33222 -17.09045 -17.03906 -16.66431 -16.41246 -15.94782 -15.54071 -15.18494 -14.82278 -14.25067 -14.10843 -13.86546 -13.63580 -13.30513 -13.26168 -13.04977 -12.97476 -12.79237 -12.48748 -12.29528 -12.06179 -12.01739 -11.55020 -11.48964 -11.43583 -11.16022 -10.85546 -10.78439 -10.66948 -10.50283 -10.12691 -9.94848 -9.84651 -9.68808 -9.56826 -9.41519 -9.35389 -9.19848 -8.86514 -8.56064 -8.24885 -6.75251 -5.59219 -2.93879 1.14012 1.33656 2.90552 3.07951 3.46581 3.50939 3.54522 3.87649 4.43779 4.48529 4.54331 4.66880 4.72872 4.75206 4.81011 4.93570 4.97347 5.02600 5.08157 5.14619 5.27465 5.32800 5.35155 5.35811 5.49882 5.53851 5.54832 5.66976 5.68563 5.81402 5.85556 5.95184 5.98033 6.02945 6.09462 6.19255 6.24901 6.25527 6.37880 6.44263 6.49243 6.65640 6.68799 6.75029 6.84224 7.13210 7.62737 7.68014 7.75627 7.93981 8.05807 8.30323 8.46522 9.27697 9.88943 10.57090 11.51561 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008215 B = 0.004984 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3407.410481 B = 5616.212715 C = 8187.313682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.610 5.610 10 C 0.154 3.846 11 C -0.124 4.124 12 H 0.070 0.930 13 C -0.137 4.137 14 H 0.081 0.919 15 C 0.190 3.810 16 C 0.163 3.837 17 H 0.109 0.891 18 C -0.130 4.130 19 C -0.115 4.115 20 C -0.076 4.076 21 H 0.094 0.906 22 C 0.108 3.892 23 N -0.612 5.612 24 C 0.518 3.482 25 O -0.523 6.523 26 C -0.096 4.096 27 C -0.113 4.113 28 C -0.064 4.064 29 C -0.176 4.176 30 C 0.093 3.907 31 N -0.482 5.482 32 C 0.120 3.880 33 H 0.251 0.749 34 H 0.018 0.982 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.129 0.871 47 H 0.132 0.868 48 H 0.153 0.847 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 -18.927 -8.235 21.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.338 5.338 10 C 0.029 3.971 11 C -0.144 4.144 12 H 0.088 0.912 13 C -0.157 4.157 14 H 0.099 0.901 15 C 0.067 3.933 16 C 0.060 3.940 17 H 0.127 0.873 18 C -0.168 4.168 19 C -0.152 4.152 20 C -0.096 4.096 21 H 0.113 0.887 22 C -0.015 4.015 23 N -0.347 5.347 24 C 0.305 3.695 25 O -0.398 6.398 26 C -0.137 4.137 27 C -0.115 4.115 28 C -0.090 4.090 29 C -0.195 4.195 30 C -0.064 4.064 31 N -0.190 5.190 32 C -0.037 4.037 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.147 0.853 47 H 0.150 0.850 48 H 0.170 0.830 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.490 -17.366 -8.473 19.838 hybrid contribution -0.026 0.200 0.277 0.342 sum -4.516 -17.166 -8.196 19.552 Atomic orbital electron populations 1.69967 1.04780 1.24772 1.56927 1.24781 0.95653 0.97478 1.02530 0.86106 0.78642 0.84164 0.77230 1.20593 1.21797 1.21839 1.19070 0.90307 0.82457 1.43732 0.90585 1.45603 1.01183 0.99270 1.87738 1.20498 0.93657 0.86267 0.96710 1.21308 0.97767 0.92867 1.02429 0.91199 1.23190 0.94202 0.99968 0.98361 0.90103 1.20907 0.83926 0.87646 1.00865 1.22071 0.97896 0.94819 0.79170 0.87319 1.22765 0.96980 0.96552 1.00520 1.22119 0.94385 0.99691 0.99009 1.21573 0.97594 0.96264 0.94167 0.88737 1.23115 0.91266 0.88132 0.98955 1.49462 1.47916 1.30957 1.06400 1.20250 0.81334 0.82756 0.85178 1.90775 1.35787 1.26922 1.86342 1.20618 1.02509 0.99512 0.91030 1.20302 0.96367 0.97429 0.97452 1.21371 0.94171 0.99145 0.94322 1.22054 1.01371 0.96476 0.99637 1.22749 0.90736 0.95210 0.97664 1.67703 1.12972 1.30327 1.08047 1.22684 0.99410 0.89185 0.92426 0.93870 0.96416 0.94380 0.94538 0.92544 0.90838 0.91657 0.92117 0.91158 0.90930 0.90295 0.87786 0.88236 0.85261 0.85001 0.83011 0.82831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.49 10.38 55.49 0.58 -27.91 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 23.13 29.55 -169.99 -5.02 18.11 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.23 -6.56 10.32 -15.06 -0.16 -6.71 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.61 -15.98 3.50 -170.87 -0.60 -16.58 16 10 C 0.15 3.15 7.17 -3.97 -0.03 3.12 16 11 C -0.12 -2.07 2.28 -92.37 -0.21 -2.28 16 12 H 0.07 1.33 5.66 -51.93 -0.29 1.04 16 13 C -0.14 -2.53 2.50 -89.29 -0.22 -2.75 16 14 H 0.08 1.45 6.46 -51.93 -0.34 1.11 16 15 C 0.19 4.80 4.96 -2.98 -0.01 4.79 16 16 C 0.16 2.54 4.09 -65.10 -0.27 2.27 16 17 H 0.11 1.93 7.72 -51.93 -0.40 1.53 16 18 C -0.13 -1.47 5.47 -24.60 -0.13 -1.61 16 19 C -0.11 -1.21 5.32 -25.35 -0.13 -1.34 16 20 C -0.08 -0.88 4.33 -89.57 -0.39 -1.27 16 21 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 22 C 0.11 1.09 5.52 -0.54 0.00 1.09 16 23 N -0.61 -8.67 1.74 -158.09 -0.28 -8.94 16 24 C 0.52 8.33 7.47 -10.98 -0.08 8.25 16 25 O -0.52 -11.11 15.94 5.56 0.09 -11.02 16 26 C -0.10 -1.13 4.50 -29.03 -0.13 -1.26 16 27 C -0.11 -1.55 4.39 -104.48 -0.46 -2.01 16 28 C -0.06 -0.77 9.86 -39.28 -0.39 -1.16 16 29 C -0.18 -1.99 10.11 -39.44 -0.40 -2.39 16 30 C 0.09 1.21 11.18 -17.55 -0.20 1.02 16 31 N -0.48 -7.78 10.36 -13.25 -0.14 -7.92 16 32 C 0.12 1.89 10.86 -17.55 -0.19 1.70 16 33 H 0.25 7.62 8.31 -40.82 -0.34 7.29 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.04 1.07 7.88 -51.93 -0.41 0.66 16 37 H 0.06 1.61 7.05 -51.93 -0.37 1.24 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.66 7.25 -51.93 -0.38 0.28 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.83 6.89 -51.93 -0.36 0.47 16 42 H 0.07 0.58 7.12 -51.93 -0.37 0.21 16 43 H 0.08 0.67 6.74 -51.93 -0.35 0.32 16 44 H 0.10 1.10 7.59 -51.93 -0.39 0.70 16 45 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 46 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 47 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 48 H 0.15 1.51 8.06 -52.48 -0.42 1.08 16 49 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -36.80 376.15 -10.62 -47.42 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.42 Total: 2.05 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -3.50 Total: -0.87 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.43 Total: -61.35 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.80 -10.62 -47.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089798531.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.025 kcal (2) G-P(sol) polarization free energy of solvation -36.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds