Wall clock time and date at job start Wed Apr 1 2020 00:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00277 * 2 1 4 4 H 1.48503 * 109.47296 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47105 * 300.00259 * 3 2 1 6 6 H 1.48498 * 109.47092 * 60.00089 * 3 2 1 7 7 C 1.38816 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00396 * 189.04769 * 7 2 1 9 9 N 1.36938 * 119.99721 * 9.04812 * 7 2 1 10 10 C 1.48454 * 127.98177 * 15.42111 * 9 7 2 11 11 C 1.54364 * 104.59097 * 140.29607 * 10 9 7 12 12 H 1.09000 * 110.92448 * 264.25304 * 11 10 9 13 13 C 1.54160 * 105.01375 * 24.13565 * 11 10 9 14 14 H 1.09006 * 110.87590 * 239.87306 * 13 11 10 15 15 C 1.48137 * 127.83849 * 195.32927 * 9 7 2 16 16 C 1.53023 * 110.21845 * 116.78455 * 13 11 10 17 17 H 1.08996 * 109.64020 * 180.20604 * 16 13 11 18 18 C 1.54205 * 108.57008 * 300.95769 * 16 13 11 19 19 C 1.52917 * 110.34595 * 58.81766 * 18 16 13 20 20 C 1.53207 * 109.00406 * 141.31544 * 11 10 9 21 21 H 1.09006 * 110.51511 * 67.40367 * 20 11 10 22 22 N 1.47648 * 108.07897 * 189.03643 * 20 11 10 23 23 C 1.34778 * 122.04545 * 238.58546 * 22 20 11 24 24 O 1.21284 * 119.99760 * 359.97438 * 23 22 20 25 25 C 1.50699 * 120.00266 * 179.97438 * 23 22 20 26 26 C 1.50694 * 109.46890 * 179.97438 * 25 23 22 27 27 C 1.38674 * 120.41502 * 90.00841 * 26 25 23 28 28 C 1.38631 * 118.42165 * 179.97438 * 27 26 25 29 29 C 1.38230 * 119.15683 * 359.97438 * 28 27 26 30 30 N 1.31848 * 120.76865 * 359.97438 * 29 28 27 31 31 C 1.31887 * 121.72445 * 359.71368 * 30 29 28 32 32 C 1.48921 * 116.01288 * 58.36155 * 22 20 11 33 33 H 0.96998 * 119.99458 * 359.97438 * 1 2 3 34 34 H 1.09001 * 110.39724 * 21.51127 * 10 9 7 35 35 H 1.09007 * 110.39999 * 259.07859 * 10 9 7 36 36 H 1.09007 * 110.40215 * 100.66436 * 15 9 7 37 37 H 1.08993 * 110.40063 * 338.37115 * 15 9 7 38 38 H 1.09005 * 109.17413 * 298.57284 * 18 16 13 39 39 H 1.08998 * 109.15468 * 179.04970 * 18 16 13 40 40 H 1.09001 * 109.44003 * 240.80578 * 19 18 16 41 41 H 1.08991 * 109.44448 * 120.90125 * 19 18 16 42 42 H 1.09001 * 109.47081 * 300.00294 * 25 23 22 43 43 H 1.09006 * 109.46625 * 59.99841 * 25 23 22 44 44 H 1.08004 * 120.79299 * 0.02562 * 27 26 25 45 45 H 1.07993 * 120.42310 * 180.02562 * 28 27 26 46 46 H 1.08004 * 119.61446 * 180.02562 * 29 28 27 47 47 H 1.07995 * 119.62364 * 180.31114 * 31 30 29 48 48 H 1.08996 * 109.75633 * 241.31696 * 32 22 20 49 49 H 1.08998 * 110.43514 * 119.90579 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0802 -1.2081 0.1465 9 7 1.3384 -2.3806 -0.1876 10 6 -0.0383 -2.5746 -0.7081 11 6 0.0614 -3.8179 -1.6175 12 1 0.2021 -3.5282 -2.6588 13 6 1.2829 -4.5989 -1.0937 14 1 2.0381 -4.7067 -1.8723 15 6 1.8214 -3.7548 0.0822 16 6 0.8484 -5.9673 -0.5641 17 1 1.7181 -6.5095 -0.1931 18 6 -0.1763 -5.7528 0.5681 19 6 -1.3848 -4.9718 0.0506 20 6 -1.2011 -4.6678 -1.4410 21 1 -2.0723 -4.1439 -1.8343 22 7 -0.9927 -5.9494 -2.1438 23 6 -1.8087 -6.3632 -3.1334 24 8 -2.7492 -5.6758 -3.4712 25 6 -1.5527 -7.6799 -3.8202 26 6 -2.6005 -7.9060 -4.8795 27 6 -2.3963 -7.4581 -6.1759 28 6 -3.3873 -7.6887 -7.1175 29 6 -4.5376 -8.3533 -6.7355 30 7 -4.6973 -8.7660 -5.4935 31 6 -3.7733 -8.5694 -4.5732 32 6 0.1768 -6.7563 -1.6978 33 1 -0.4849 0.8401 0.0004 34 1 -0.3522 -1.7051 -1.2856 35 1 -0.7324 -2.7581 0.1123 36 1 1.4196 -4.1201 1.0274 37 1 2.9109 -3.7781 0.0991 38 1 0.2955 -5.1950 1.3771 39 1 -0.5052 -6.7227 0.9412 40 1 -1.4759 -4.0365 0.6030 41 1 -2.2879 -5.5654 0.1915 42 1 -0.5658 -7.6627 -4.2826 43 1 -1.5968 -8.4862 -3.0880 44 1 -1.4864 -6.9425 -6.4459 45 1 -3.2618 -7.3542 -8.1366 46 1 -5.3142 -8.5373 -7.4632 47 1 -3.9375 -8.9263 -3.5672 48 1 0.8734 -6.8846 -2.5262 49 1 -0.1498 -7.7296 -1.3317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089798532.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:57 Heat of formation + Delta-G solvation = 38.732965 kcal Electronic energy + Delta-G solvation = -30491.346372 eV Core-core repulsion = 26611.946709 eV Total energy + Delta-G solvation = -3879.399663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.10881 -40.32180 -38.57208 -35.59163 -33.78308 -32.99938 -32.14420 -31.86616 -31.60571 -29.35839 -28.17381 -27.04905 -25.36769 -24.10533 -23.73556 -22.85280 -21.81365 -21.13022 -20.42296 -19.51145 -17.39747 -17.25306 -16.95235 -16.66980 -16.40398 -16.06054 -15.70117 -15.25432 -14.93936 -14.65035 -14.23151 -13.90663 -13.65026 -13.55241 -13.35005 -13.22539 -13.05110 -12.88061 -12.63891 -12.41134 -12.30324 -11.86678 -11.72382 -11.68296 -11.58711 -11.22451 -11.09386 -10.86190 -10.55450 -10.13110 -10.11818 -10.02642 -9.90542 -9.78036 -9.74337 -9.62851 -9.61755 -9.38057 -9.05530 -8.66907 -8.33657 -6.83025 -5.79145 -3.12881 0.92655 1.13525 2.70505 3.01060 3.37094 3.43173 3.45505 3.67495 4.23327 4.45288 4.47125 4.57167 4.58717 4.77039 4.77913 4.81671 4.85614 5.00633 5.12901 5.19796 5.20196 5.26327 5.35936 5.44455 5.47546 5.56065 5.58836 5.64884 5.68611 5.79550 5.84482 5.91396 5.92674 5.94607 6.05931 6.09870 6.18327 6.27016 6.42025 6.46761 6.51611 6.53631 6.61371 6.69030 6.83171 7.01584 7.38412 7.56418 7.58032 7.73082 7.80840 8.21323 8.27120 9.10921 9.74581 10.52248 11.34755 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002706 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.162722 B =10346.028882 C =11094.793895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.075 0.925 9 N -0.595 5.595 10 C 0.160 3.840 11 C -0.115 4.115 12 H 0.067 0.933 13 C -0.093 4.093 14 H 0.066 0.934 15 C 0.126 3.874 16 C -0.090 4.090 17 H 0.085 0.915 18 C -0.113 4.113 19 C -0.132 4.132 20 C 0.155 3.845 21 H 0.099 0.901 22 N -0.607 5.607 23 C 0.517 3.483 24 O -0.539 6.539 25 C -0.096 4.096 26 C -0.113 4.113 27 C -0.062 4.062 28 C -0.171 4.171 29 C 0.093 3.907 30 N -0.485 5.485 31 C 0.112 3.888 32 C 0.117 3.883 33 H 0.253 0.747 34 H 0.083 0.917 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.041 0.959 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.154 0.846 47 H 0.152 0.848 48 H 0.067 0.933 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 -20.042 -7.866 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.093 0.907 9 N -0.318 5.318 10 C 0.034 3.966 11 C -0.136 4.136 12 H 0.085 0.915 13 C -0.113 4.113 14 H 0.085 0.915 15 C -0.001 4.001 16 C -0.109 4.109 17 H 0.103 0.897 18 C -0.151 4.151 19 C -0.170 4.170 20 C 0.052 3.948 21 H 0.117 0.883 22 N -0.341 5.341 23 C 0.304 3.696 24 O -0.416 6.416 25 C -0.137 4.137 26 C -0.115 4.115 27 C -0.088 4.088 28 C -0.191 4.191 29 C -0.064 4.064 30 N -0.193 5.193 31 C -0.045 4.045 32 C -0.006 4.006 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.171 0.829 47 H 0.169 0.831 48 H 0.085 0.915 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.161 -19.832 -7.792 21.541 hybrid contribution 1.349 1.343 -0.277 1.924 sum -1.812 -18.489 -8.069 20.254 Atomic orbital electron populations 1.69896 1.05004 1.25232 1.55869 1.24877 0.95613 0.97882 1.01926 0.86090 0.78856 0.83778 0.77279 1.20448 1.21678 1.21727 1.19013 0.90706 0.82440 1.43192 0.90702 1.44968 1.13294 0.99894 1.73691 1.21806 0.87210 0.93488 0.94117 1.22640 0.92675 0.97489 1.00750 0.91482 1.22139 0.97184 0.93179 0.98802 0.91507 1.21905 0.96841 0.86822 0.94506 1.21621 0.97876 0.96590 0.94839 0.89666 1.21775 0.95644 0.99658 0.97977 1.22022 0.97531 1.01734 0.95685 1.21351 0.99235 0.82789 0.91383 0.88280 1.48996 1.28051 1.21664 1.35356 1.20270 0.82296 0.87330 0.79695 1.90730 1.30074 1.56786 1.64051 1.20615 0.99028 0.96860 0.97195 1.20331 0.96919 0.99526 0.94716 1.21456 0.99199 0.95690 0.92446 1.22107 0.95285 1.00859 1.00848 1.22738 0.96299 0.94263 0.93095 1.67671 1.30583 1.19103 1.01977 1.22573 0.88593 0.94830 0.98511 1.22155 0.87151 0.93917 0.97327 0.93654 0.89868 0.94868 0.95027 0.94066 0.90432 0.92712 0.89081 0.92510 0.87910 0.87821 0.85001 0.84802 0.82903 0.83113 0.91468 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.48 10.87 55.49 0.60 -25.87 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.82 29.56 -169.99 -5.03 16.79 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.23 -6.14 10.36 -15.06 -0.16 -6.29 16 8 H 0.08 1.99 7.85 -52.49 -0.41 1.57 16 9 N -0.60 -14.61 3.39 -168.59 -0.57 -15.18 16 10 C 0.16 3.67 5.21 -2.25 -0.01 3.66 16 11 C -0.11 -2.10 3.33 -89.19 -0.30 -2.39 16 12 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 13 C -0.09 -1.48 3.10 -89.25 -0.28 -1.76 16 14 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 15 C 0.13 2.42 6.51 -2.39 -0.02 2.41 16 16 C -0.09 -1.08 2.96 -89.67 -0.27 -1.35 16 17 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 18 C -0.11 -1.45 5.31 -26.14 -0.14 -1.59 16 19 C -0.13 -1.96 5.52 -26.60 -0.15 -2.11 16 20 C 0.15 2.51 3.09 -67.03 -0.21 2.30 16 21 H 0.10 1.83 7.23 -51.93 -0.38 1.46 16 22 N -0.61 -8.11 2.84 -162.61 -0.46 -8.57 16 23 C 0.52 7.13 7.74 -10.99 -0.09 7.04 16 24 O -0.54 -9.83 15.64 5.55 0.09 -9.74 16 25 C -0.10 -0.90 4.79 -29.04 -0.14 -1.04 16 26 C -0.11 -1.23 4.39 -104.48 -0.46 -1.69 16 27 C -0.06 -0.64 9.86 -39.28 -0.39 -1.02 16 28 C -0.17 -1.61 10.11 -39.44 -0.40 -2.01 16 29 C 0.09 0.95 11.18 -17.55 -0.20 0.75 16 30 N -0.49 -6.00 10.36 -13.25 -0.14 -6.14 16 31 C 0.11 1.29 10.86 -17.55 -0.19 1.10 16 32 C 0.12 1.19 5.35 -2.40 -0.01 1.17 16 33 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.08 2.22 6.51 -51.93 -0.34 1.89 16 35 H 0.03 0.79 5.21 -51.92 -0.27 0.52 16 36 H 0.03 0.60 5.30 -51.93 -0.28 0.33 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.10 5.79 -51.93 -0.30 0.80 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 1.55 5.66 -51.93 -0.29 1.26 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 44 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 45 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 47 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.54 8.13 -51.93 -0.42 0.11 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -33.52 374.47 -10.65 -44.17 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.31 Total: 1.96 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -3.48 Total: -3.06 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.57 Total: -55.77 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.52 -10.65 -44.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089798532.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.906 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds