Wall clock time and date at job start Wed Apr 1 2020 00:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99611 * 2 1 4 4 H 1.48498 * 109.47210 * 239.99548 * 3 2 1 5 5 H 1.48499 * 109.47470 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46998 * 119.99914 * 3 2 1 7 7 C 1.38814 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99990 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99996 * 359.97438 * 7 2 1 10 10 C 1.49347 * 125.95534 * 180.02562 * 9 7 2 11 11 C 1.53955 * 103.03510 * 153.53206 * 10 9 7 12 12 H 1.09002 * 112.73998 * 284.33709 * 11 10 9 13 13 C 1.56212 * 96.89037 * 43.42432 * 11 10 9 14 14 H 1.08995 * 100.33053 * 59.96334 * 13 11 10 15 15 C 1.48022 * 104.18958 * 313.05218 * 13 11 10 16 16 C 1.49342 * 109.00049 * 167.90390 * 13 11 10 17 17 H 1.09006 * 114.66574 * 153.13094 * 16 13 11 18 18 C 1.55607 * 107.79241 * 24.21864 * 16 13 11 19 19 C 1.53810 * 108.81685 * 289.49280 * 18 16 13 20 20 C 1.53315 * 116.59466 * 151.81538 * 11 10 9 21 21 H 1.08999 * 112.86543 * 48.65049 * 20 11 10 22 22 C 1.54466 * 109.31623 * 281.25765 * 20 11 10 23 23 N 1.49481 * 107.62610 * 289.16610 * 22 20 11 24 24 C 1.34777 * 123.95557 * 216.82903 * 23 22 20 25 25 O 1.21276 * 120.00370 * 178.34182 * 24 23 22 26 26 C 1.50706 * 119.99418 * 358.33676 * 24 23 22 27 27 C 1.50696 * 109.46802 * 180.02562 * 26 24 23 28 28 C 1.38680 * 120.41621 * 269.72031 * 27 26 24 29 29 C 1.38630 * 118.41627 * 179.78629 * 28 27 26 30 30 C 1.38221 * 119.16544 * 0.50858 * 29 28 27 31 31 N 1.31857 * 120.76230 * 359.73458 * 30 29 28 32 32 C 1.31883 * 121.72519 * 359.97438 * 31 30 29 33 33 H 0.96999 * 120.00304 * 0.02562 * 1 2 3 34 34 H 1.08999 * 110.70106 * 35.14500 * 10 9 7 35 35 H 1.08997 * 110.70238 * 271.91997 * 10 9 7 36 36 H 1.08991 * 110.50681 * 273.47622 * 15 13 11 37 37 H 1.09008 * 110.50426 * 150.77909 * 15 13 11 38 38 H 1.09000 * 109.57867 * 49.29658 * 18 16 13 39 39 H 1.09005 * 109.57288 * 169.56096 * 18 16 13 40 40 H 1.08996 * 109.85961 * 154.70119 * 19 18 16 41 41 H 1.09003 * 109.85732 * 275.65266 * 19 18 16 42 42 H 1.08995 * 110.00734 * 46.66142 * 22 20 11 43 43 H 1.09003 * 110.00233 * 167.96838 * 22 20 11 44 44 H 1.09001 * 109.47149 * 299.99673 * 26 24 23 45 45 H 1.09001 * 109.47258 * 59.99945 * 26 24 23 46 46 H 1.07999 * 120.78832 * 0.02562 * 28 27 26 47 47 H 1.08008 * 120.41516 * 180.26307 * 29 28 27 48 48 H 1.08000 * 119.62128 * 179.70493 * 30 29 28 49 49 H 1.08006 * 119.61989 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.9344 -3.7519 -0.0005 11 6 0.8497 -4.6161 0.6680 12 1 0.8046 -4.4748 1.7478 13 6 -0.3710 -4.0056 -0.0917 14 1 -0.0970 -4.2379 -1.1208 15 6 -0.1610 -2.5432 0.0000 16 6 -1.5696 -4.8647 0.1440 17 1 -2.5241 -4.3428 0.0747 18 6 -1.3480 -5.6343 1.4781 19 6 -0.2472 -6.6875 1.2664 20 6 0.8052 -6.0947 0.2649 21 1 1.7835 -6.5737 0.3031 22 6 0.1050 -6.2298 -1.1053 23 7 -1.3472 -5.9391 -0.9021 24 6 -2.3409 -6.5793 -1.5495 25 8 -3.4973 -6.3061 -1.3071 26 6 -2.0148 -7.6346 -2.5748 27 6 -3.2931 -8.1909 -3.1470 28 6 -3.9043 -9.2899 -2.5623 29 6 -5.0813 -9.7645 -3.1201 30 6 -5.5973 -9.1379 -4.2388 31 7 -4.9861 -8.0979 -4.7713 32 6 -3.8682 -7.6158 -4.2641 33 1 -0.4850 0.8400 -0.0004 34 1 2.8527 -3.7640 0.5864 35 1 2.1226 -4.0898 -1.0196 36 1 -0.5852 -2.1538 0.9254 37 1 -0.5976 -2.0399 -0.8628 38 1 -1.0404 -4.9356 2.2561 39 1 -2.2747 -6.1260 1.7743 40 1 0.2344 -6.9160 2.2171 41 1 -0.6790 -7.5943 0.8428 42 1 0.5029 -5.4920 -1.8019 43 1 0.2526 -7.2343 -1.5020 44 1 -1.4211 -7.1926 -3.3750 45 1 -1.4481 -8.4372 -2.1027 46 1 -3.4756 -9.7622 -1.6908 47 1 -5.5867 -10.6158 -2.6882 48 1 -6.5112 -9.5045 -4.6822 49 1 -3.3963 -6.7620 -4.7276 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089798533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:00 Heat of formation + Delta-G solvation = 83.852780 kcal Electronic energy + Delta-G solvation = -30502.680627 eV Core-core repulsion = 26625.237507 eV Total energy + Delta-G solvation = -3877.443121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.59220 -40.37524 -38.54164 -35.82253 -33.76870 -32.83638 -32.09598 -31.93021 -31.26483 -29.27193 -28.12410 -27.06758 -25.60863 -24.12609 -23.73631 -22.81210 -21.84686 -21.26849 -20.13065 -19.28635 -17.36167 -17.18287 -17.03128 -16.79971 -16.66024 -16.21072 -15.77904 -15.31108 -14.70967 -14.65123 -14.19773 -13.97724 -13.82292 -13.46257 -13.35792 -13.23417 -12.92470 -12.70578 -12.64623 -12.36265 -12.10735 -11.90723 -11.73892 -11.66581 -11.51349 -11.17275 -11.05238 -10.91272 -10.83904 -10.55522 -10.27702 -10.04954 -9.97166 -9.80628 -9.62049 -9.56991 -9.44337 -9.41605 -9.06304 -8.60854 -8.38847 -6.86899 -5.71043 -3.04623 0.92863 1.12965 2.72043 2.88750 3.40393 3.44629 3.46367 3.67079 4.23629 4.44512 4.49098 4.51061 4.55621 4.58389 4.71892 4.78508 4.82946 4.87993 5.05983 5.12450 5.13783 5.19033 5.28409 5.33420 5.40115 5.46600 5.49893 5.55752 5.59179 5.65812 5.74358 5.90227 5.91297 6.01132 6.04146 6.06217 6.06981 6.11756 6.25897 6.36013 6.40012 6.47379 6.52815 6.60400 6.89472 6.93012 7.50971 7.54348 7.61184 7.79301 7.82182 8.17044 8.24702 9.16253 9.78309 10.45762 11.41382 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018086 B = 0.002723 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.776959 B =10281.381839 C =11084.192851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.138 3.862 11 C -0.107 4.107 12 H 0.089 0.911 13 C -0.159 4.159 14 H 0.068 0.932 15 C 0.208 3.792 16 C 0.183 3.817 17 H 0.112 0.888 18 C -0.126 4.126 19 C -0.105 4.105 20 C -0.094 4.094 21 H 0.099 0.901 22 C 0.109 3.891 23 N -0.622 5.622 24 C 0.522 3.478 25 O -0.541 6.541 26 C -0.098 4.098 27 C -0.112 4.112 28 C -0.063 4.063 29 C -0.173 4.173 30 C 0.093 3.907 31 N -0.484 5.484 32 C 0.114 3.886 33 H 0.253 0.747 34 H 0.041 0.959 35 H 0.021 0.979 36 H 0.036 0.964 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.154 0.846 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.397 -22.018 -2.765 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.337 5.337 10 C 0.013 3.987 11 C -0.126 4.126 12 H 0.107 0.893 13 C -0.179 4.179 14 H 0.086 0.914 15 C 0.084 3.916 16 C 0.082 3.918 17 H 0.130 0.870 18 C -0.165 4.165 19 C -0.143 4.143 20 C -0.114 4.114 21 H 0.117 0.883 22 C -0.013 4.013 23 N -0.358 5.358 24 C 0.310 3.690 25 O -0.418 6.418 26 C -0.139 4.139 27 C -0.114 4.114 28 C -0.089 4.089 29 C -0.192 4.192 30 C -0.064 4.064 31 N -0.192 5.192 32 C -0.043 4.043 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.149 0.851 47 H 0.151 0.849 48 H 0.171 0.829 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.453 -21.246 -3.455 21.981 hybrid contribution 0.916 0.513 0.754 1.293 sum -3.537 -20.732 -2.701 21.205 Atomic orbital electron populations 1.69927 1.04832 1.25179 1.56919 1.24782 0.95704 0.97563 1.02417 0.86222 0.78451 0.83363 0.77829 1.21245 1.21619 1.21238 1.18995 0.90288 0.82385 1.43914 0.90522 1.45537 1.00847 0.99592 1.87736 1.21636 0.94401 0.86360 0.96339 1.22942 0.97604 0.91931 1.00148 0.89272 1.21908 0.94078 0.99508 1.02365 0.91447 1.19750 0.84393 0.86431 1.00995 1.21628 0.98878 0.86277 0.85003 0.86986 1.22532 0.98408 0.98133 0.97381 1.22342 0.95744 0.97473 0.98752 1.22552 0.97787 0.97237 0.93794 0.88266 1.22388 0.80199 1.00515 0.98171 1.50663 1.05808 1.38131 1.41207 1.20165 0.85016 0.82096 0.81733 1.90720 1.19439 1.65690 1.65971 1.20643 0.95949 0.98467 0.98814 1.20329 0.97549 0.96574 0.96995 1.21418 0.94573 0.94817 0.98088 1.22088 0.97129 1.01951 0.98067 1.22746 0.98822 0.91689 0.93136 1.67690 1.08521 1.11421 1.31592 1.22623 0.91319 0.97647 0.92730 0.93678 0.94028 0.96105 0.94528 0.92746 0.90524 0.92165 0.91948 0.92623 0.90616 0.90318 0.87713 0.88023 0.85129 0.84872 0.82919 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 10.43 55.49 0.58 -26.32 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.23 -6.22 10.32 -15.06 -0.16 -6.38 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.61 -14.99 3.49 -170.67 -0.60 -15.59 16 10 C 0.14 2.61 6.65 -1.96 -0.01 2.60 16 11 C -0.11 -1.66 2.69 -88.24 -0.24 -1.89 16 12 H 0.09 1.46 6.87 -51.93 -0.36 1.10 16 13 C -0.16 -2.80 2.45 -93.11 -0.23 -3.02 16 14 H 0.07 1.21 4.05 -51.93 -0.21 1.00 16 15 C 0.21 4.89 5.20 -4.80 -0.02 4.86 16 16 C 0.18 2.83 4.44 -65.46 -0.29 2.54 16 17 H 0.11 1.92 7.97 -51.93 -0.41 1.51 16 18 C -0.13 -1.67 5.59 -24.92 -0.14 -1.81 16 19 C -0.11 -1.15 5.50 -24.19 -0.13 -1.29 16 20 C -0.09 -1.06 4.11 -87.57 -0.36 -1.42 16 21 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 22 C 0.11 1.19 5.30 -1.61 -0.01 1.18 16 23 N -0.62 -8.25 2.15 -159.22 -0.34 -8.60 16 24 C 0.52 7.14 7.82 -10.98 -0.09 7.06 16 25 O -0.54 -9.64 16.18 5.56 0.09 -9.55 16 26 C -0.10 -0.94 4.63 -29.03 -0.13 -1.07 16 27 C -0.11 -1.23 4.39 -104.48 -0.46 -1.69 16 28 C -0.06 -0.62 9.86 -39.27 -0.39 -1.01 16 29 C -0.17 -1.56 10.11 -39.44 -0.40 -1.96 16 30 C 0.09 0.95 11.18 -17.55 -0.20 0.75 16 31 N -0.48 -6.16 10.36 -13.25 -0.14 -6.30 16 32 C 0.11 1.38 10.86 -17.55 -0.19 1.18 16 33 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.02 0.39 7.58 -51.93 -0.39 -0.01 16 36 H 0.04 0.95 7.74 -51.93 -0.40 0.55 16 37 H 0.05 1.45 7.33 -51.92 -0.38 1.07 16 38 H 0.08 1.05 7.06 -51.93 -0.37 0.69 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.58 7.73 -51.93 -0.40 0.18 16 42 H 0.08 0.93 6.02 -51.93 -0.31 0.62 16 43 H 0.08 0.60 6.92 -51.93 -0.36 0.24 16 44 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 45 H 0.10 0.71 7.64 -51.93 -0.40 0.32 16 46 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 47 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 48 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 49 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -33.74 376.01 -10.64 -44.39 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.34 Total: 1.03 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -3.54 Total: -1.70 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.50 Total: -56.80 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.74 -10.64 -44.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089798533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.241 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds