Wall clock time and date at job start Wed Apr 1 2020 01:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99636 * 2 1 4 4 H 1.48506 * 109.47003 * 269.99250 * 3 2 1 5 5 H 1.48492 * 109.47357 * 29.99435 * 3 2 1 6 6 H 1.48501 * 109.46973 * 149.99732 * 3 2 1 7 7 C 1.38809 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00403 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99484 * 0.02562 * 7 2 1 10 10 C 1.46511 * 119.99519 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.32537 * 34.99858 * 10 9 7 12 12 C 1.53033 * 109.18001 * 154.56044 * 10 9 7 13 13 C 1.53970 * 108.82734 * 175.58673 * 12 10 9 14 14 H 1.09006 * 112.99201 * 169.00568 * 13 12 10 15 15 C 1.55423 * 106.41473 * 293.82160 * 13 12 10 16 16 C 1.55176 * 100.35356 * 73.37427 * 15 13 12 17 17 H 1.08992 * 112.48617 * 163.34637 * 16 15 13 18 18 C 1.52984 * 109.32331 * 275.35695 * 10 9 7 19 19 N 1.47786 * 104.87369 * 40.82476 * 16 15 13 20 20 C 1.34783 * 125.85454 * 153.22655 * 19 16 15 21 21 O 1.21280 * 119.99796 * 355.11142 * 20 19 16 22 22 C 1.50693 * 119.99930 * 175.11203 * 20 19 16 23 23 C 1.50707 * 115.55033 * 294.35537 * 22 20 19 24 24 C 1.38229 * 119.61649 * 314.00104 * 23 22 20 25 25 C 1.38627 * 119.16053 * 179.71501 * 24 23 22 26 26 C 1.38672 * 118.41832 * 0.54638 * 25 24 23 27 27 C 1.38178 * 119.16390 * 359.73780 * 26 25 24 28 28 N 1.31854 * 119.61755 * 134.27723 * 23 22 20 29 29 C 1.52999 * 117.50040 * 148.68543 * 22 20 19 30 30 C 1.53000 * 117.50234 * 80.02226 * 22 20 19 31 31 C 1.48746 * 107.40997 * 333.52323 * 19 16 15 32 32 H 0.97003 * 120.00181 * 0.02562 * 1 2 3 33 33 H 0.96994 * 120.00632 * 0.02562 * 9 7 2 34 34 H 1.08997 * 109.57105 * 295.38828 * 12 10 9 35 35 H 1.08999 * 109.57604 * 55.77927 * 12 10 9 36 36 H 1.09006 * 111.23624 * 315.59875 * 15 13 12 37 37 H 1.09001 * 111.23817 * 191.15408 * 15 13 12 38 38 H 1.09003 * 109.53419 * 304.70577 * 18 10 9 39 39 H 1.08998 * 109.53596 * 64.93039 * 18 10 9 40 40 H 1.08004 * 120.41968 * 359.97438 * 24 23 22 41 41 H 1.07992 * 120.78982 * 180.25683 * 25 24 23 42 42 H 1.08002 * 120.42161 * 179.75284 * 26 25 24 43 43 H 1.08007 * 119.62024 * 180.02562 * 27 26 25 44 44 H 1.09002 * 117.49814 * 359.97438 * 29 22 20 45 45 H 1.09003 * 117.50375 * 145.02021 * 29 22 20 46 46 H 1.08993 * 117.50251 * 214.97858 * 30 22 20 47 47 H 1.09000 * 117.49250 * 359.97438 * 30 22 20 48 48 H 1.08997 * 109.84781 * 241.63313 * 31 19 16 49 49 H 1.08995 * 109.93763 * 120.49180 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 1 2.9678 -3.5475 0.5923 12 6 1.1788 -4.7446 0.6224 13 6 1.9114 -6.0949 0.5188 14 1 1.4377 -6.8823 1.1051 15 6 2.0021 -6.4303 -0.9961 16 6 3.0906 -5.4178 -1.4411 17 1 3.5214 -5.6681 -2.4105 18 6 2.4292 -4.0284 -1.4352 19 7 4.0935 -5.4374 -0.3558 20 6 5.4033 -5.1474 -0.4858 21 8 5.8686 -4.9231 -1.5831 22 6 6.2894 -5.1019 0.7322 23 6 5.9799 -4.0072 1.7206 24 6 5.7571 -2.7205 1.2674 25 6 5.4673 -1.7220 2.1843 26 6 5.4236 -2.0542 3.5300 27 6 5.6631 -3.3612 3.9090 28 7 5.9302 -4.2868 3.0082 29 6 7.7563 -5.4987 0.5538 30 6 6.7938 -6.4347 1.2892 31 6 3.3912 -5.8408 0.8918 32 1 -0.4850 0.8401 -0.0004 33 1 0.3556 -2.3881 -0.0002 34 1 0.9924 -4.5096 1.6702 35 1 0.2324 -4.8002 0.0845 36 1 1.0549 -6.2387 -1.5004 37 1 2.3303 -7.4576 -1.1541 38 1 1.5293 -4.0505 -2.0499 39 1 3.1261 -3.2913 -1.8340 40 1 5.8040 -2.4967 0.2118 41 1 5.2846 -0.7086 1.8589 42 1 5.2047 -1.3010 4.2724 43 1 5.6305 -3.6282 4.9550 44 1 8.0803 -5.7930 -0.4444 45 1 8.4975 -4.9682 1.1517 46 1 6.9021 -6.5196 2.3704 47 1 6.4842 -7.3444 0.7748 48 1 3.4572 -5.0406 1.6289 49 1 3.8363 -6.7521 1.2909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094923931.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:02 Heat of formation + Delta-G solvation = 53.423017 kcal Electronic energy + Delta-G solvation = -31935.015977 eV Core-core repulsion = 28056.253323 eV Total energy + Delta-G solvation = -3878.762654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.06971 -40.04098 -38.58020 -36.26047 -34.74587 -32.56438 -32.25286 -31.24438 -31.00467 -30.45832 -27.90609 -25.87888 -24.93450 -23.68223 -23.46318 -22.93029 -22.26001 -21.05725 -20.79012 -19.22648 -18.62114 -17.58854 -17.12076 -16.41782 -16.05680 -15.81839 -15.46569 -15.14730 -14.74402 -14.51391 -14.26959 -13.83138 -13.65407 -13.44583 -13.23387 -13.07311 -12.90719 -12.78714 -12.53530 -12.25018 -12.18207 -11.81127 -11.74018 -11.63944 -11.53543 -11.03813 -10.96616 -10.83716 -10.77892 -10.70585 -10.46039 -10.21905 -10.07745 -9.75121 -9.69403 -9.58761 -9.55666 -9.37983 -8.91029 -8.78301 -8.40183 -6.96089 -5.78112 -3.05938 1.16692 1.42481 2.63679 3.01291 3.38525 3.43372 3.46166 3.57121 4.00960 4.14748 4.39826 4.54167 4.60240 4.62859 4.81130 4.87102 4.93605 5.00043 5.16739 5.24645 5.35372 5.36220 5.38774 5.43340 5.48033 5.52378 5.59116 5.68143 5.72030 5.76096 5.80043 5.80599 5.87089 5.92899 5.97849 6.05470 6.08182 6.14622 6.24565 6.29304 6.34079 6.40016 6.48483 6.57044 6.67871 6.78511 6.98772 7.08500 7.67911 7.69410 8.01878 8.30698 8.40707 9.51641 10.09941 10.45146 11.44772 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009640 B = 0.005567 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.009858 B = 5028.305305 C = 6534.716369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.900 3.100 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.229 4.229 8 H 0.066 0.934 9 N -0.724 5.724 10 C 0.180 3.820 11 H 0.049 0.951 12 C -0.122 4.122 13 C -0.099 4.099 14 H 0.099 0.901 15 C -0.126 4.126 16 C 0.131 3.869 17 H 0.091 0.909 18 C -0.143 4.143 19 N -0.599 5.599 20 C 0.575 3.425 21 O -0.538 6.538 22 C -0.112 4.112 23 C 0.166 3.834 24 C -0.148 4.148 25 C -0.057 4.057 26 C -0.170 4.170 27 C 0.097 3.903 28 N -0.480 5.480 29 C -0.132 4.132 30 C -0.138 4.138 31 C 0.112 3.888 32 H 0.254 0.746 33 H 0.383 0.617 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.155 0.845 44 H 0.108 0.892 45 H 0.101 0.899 46 H 0.116 0.884 47 H 0.097 0.903 48 H 0.073 0.927 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.788 -14.271 5.870 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.732 3.268 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.361 4.361 8 H 0.084 0.916 9 N -0.364 5.364 10 C 0.070 3.930 11 H 0.067 0.933 12 C -0.161 4.161 13 C -0.119 4.119 14 H 0.117 0.883 15 C -0.164 4.164 16 C 0.028 3.972 17 H 0.109 0.891 18 C -0.184 4.184 19 N -0.333 5.333 20 C 0.362 3.638 21 O -0.416 6.416 22 C -0.116 4.116 23 C 0.028 3.972 24 C -0.168 4.168 25 C -0.083 4.083 26 C -0.190 4.190 27 C -0.060 4.060 28 N -0.189 5.189 29 C -0.170 4.170 30 C -0.175 4.175 31 C -0.010 4.010 32 H 0.064 0.936 33 H 0.216 0.784 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.149 0.851 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.126 0.874 45 H 0.120 0.880 46 H 0.134 0.866 47 H 0.116 0.884 48 H 0.091 0.909 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.386 -14.792 5.586 18.918 hybrid contribution -0.237 2.179 -0.297 2.212 sum 10.149 -12.613 5.289 17.031 Atomic orbital electron populations 1.69649 1.05014 1.25494 1.58039 1.24686 0.95438 0.97432 1.03328 0.86299 0.78603 0.84331 0.77608 1.21757 1.21789 1.20896 1.19156 0.90735 0.84095 1.42100 0.91589 1.42435 1.05668 0.99790 1.88487 1.20239 0.94284 0.85957 0.92470 0.93311 1.22141 0.99104 0.93358 1.01455 1.22620 0.94247 0.98507 0.96481 0.88336 1.23030 0.99176 0.98313 0.95835 1.22348 0.87210 0.96788 0.90860 0.89081 1.22820 1.00049 0.94205 1.01372 1.48820 1.06681 1.66808 1.10946 1.18712 0.80427 0.76293 0.88399 1.90694 1.73579 1.50160 1.27130 1.19854 0.98061 0.97879 0.95762 1.19606 0.96386 0.91228 0.89957 1.21879 1.00157 0.93310 1.01425 1.21649 0.93452 1.00269 0.92903 1.22143 1.01599 0.98288 0.96957 1.22610 0.95570 0.89035 0.98775 1.67257 1.13430 1.36784 1.01424 1.23041 0.89679 1.01640 1.02680 1.23023 1.01213 0.91442 1.01839 1.22413 0.92054 0.99771 0.86810 0.93589 0.78390 0.91794 0.91603 0.89507 0.91360 0.91522 0.92053 0.85083 0.84481 0.84811 0.82804 0.87393 0.88021 0.86576 0.88438 0.90900 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.90 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.23 9.92 -15.06 -0.15 -6.38 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -17.72 5.11 -53.41 -0.27 -17.99 16 10 C 0.18 3.51 2.39 -67.92 -0.16 3.35 16 11 H 0.05 1.03 5.90 -51.93 -0.31 0.72 16 12 C -0.12 -1.92 4.95 -26.21 -0.13 -2.05 16 13 C -0.10 -1.22 4.33 -87.93 -0.38 -1.60 16 14 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 15 C -0.13 -1.51 6.18 -24.29 -0.15 -1.66 16 16 C 0.13 2.00 3.96 -65.62 -0.26 1.74 16 17 H 0.09 1.41 7.97 -51.93 -0.41 1.00 16 18 C -0.14 -2.65 5.28 -26.28 -0.14 -2.78 16 19 N -0.60 -9.13 2.42 -160.48 -0.39 -9.52 16 20 C 0.57 9.48 6.51 -10.99 -0.07 9.41 16 21 O -0.54 -10.49 16.93 5.56 0.09 -10.40 16 22 C -0.11 -1.57 1.64 -156.81 -0.26 -1.82 16 23 C 0.17 2.47 5.29 -82.58 -0.44 2.03 16 24 C -0.15 -2.40 9.40 -39.44 -0.37 -2.77 16 25 C -0.06 -0.87 10.18 -39.28 -0.40 -1.27 16 26 C -0.17 -2.23 10.11 -39.44 -0.40 -2.63 16 27 C 0.10 1.21 11.18 -17.55 -0.20 1.01 16 28 N -0.48 -6.62 9.36 -9.47 -0.09 -6.71 16 29 C -0.13 -1.57 9.76 -26.69 -0.26 -1.83 16 30 C -0.14 -1.53 9.73 -26.69 -0.26 -1.79 16 31 C 0.11 1.50 5.19 -1.90 -0.01 1.49 16 32 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.38 9.98 7.79 -40.82 -0.32 9.66 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.03 7.97 -51.93 -0.41 0.61 16 36 H 0.09 1.00 7.75 -51.93 -0.40 0.60 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.23 8.00 -51.93 -0.42 0.81 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.13 2.30 7.84 -52.48 -0.41 1.88 16 41 H 0.14 2.11 8.06 -52.49 -0.42 1.68 16 42 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.15 1.41 8.06 -52.48 -0.42 0.99 16 44 H 0.11 1.28 8.00 -51.93 -0.42 0.87 16 45 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.12 1.24 7.59 -51.93 -0.39 0.84 16 47 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.07 1.13 6.10 -51.93 -0.32 0.81 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -32.00 391.45 -10.77 -42.76 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -7.58 Total: 13.96 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -4.13 Total: -8.04 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.03 Total: -61.32 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.00 -10.77 -42.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094923931.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.188 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds