Wall clock time and date at job start Wed Apr 1 2020 01:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99636 * 2 1 4 4 H 1.48506 * 109.47003 * 269.99250 * 3 2 1 5 5 H 1.48492 * 109.47357 * 29.99435 * 3 2 1 6 6 H 1.48501 * 109.46973 * 149.99732 * 3 2 1 7 7 C 1.38809 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00403 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99484 * 0.02562 * 7 2 1 10 10 C 1.46511 * 119.99519 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.32537 * 34.99858 * 10 9 7 12 12 C 1.53033 * 109.18001 * 154.56044 * 10 9 7 13 13 C 1.53970 * 108.82734 * 175.58673 * 12 10 9 14 14 H 1.09006 * 112.99201 * 169.00568 * 13 12 10 15 15 C 1.55423 * 106.41473 * 293.82160 * 13 12 10 16 16 C 1.55176 * 100.35356 * 73.37427 * 15 13 12 17 17 H 1.08992 * 112.48617 * 163.34637 * 16 15 13 18 18 C 1.52984 * 109.32331 * 275.35695 * 10 9 7 19 19 N 1.47786 * 104.87369 * 40.82476 * 16 15 13 20 20 C 1.34783 * 125.85454 * 153.22655 * 19 16 15 21 21 O 1.21280 * 119.99796 * 355.11142 * 20 19 16 22 22 C 1.50693 * 119.99930 * 175.11203 * 20 19 16 23 23 C 1.50707 * 115.55033 * 294.35537 * 22 20 19 24 24 C 1.38229 * 119.61649 * 314.00104 * 23 22 20 25 25 C 1.38627 * 119.16053 * 179.71501 * 24 23 22 26 26 C 1.38672 * 118.41832 * 0.54638 * 25 24 23 27 27 C 1.38178 * 119.16390 * 359.73780 * 26 25 24 28 28 N 1.31854 * 119.61755 * 134.27723 * 23 22 20 29 29 C 1.52999 * 117.50040 * 148.68543 * 22 20 19 30 30 C 1.53000 * 117.50234 * 80.02226 * 22 20 19 31 31 C 1.48746 * 107.40997 * 333.52323 * 19 16 15 32 32 H 0.97003 * 120.00181 * 0.02562 * 1 2 3 33 33 H 0.96994 * 120.00632 * 0.02562 * 9 7 2 34 34 H 1.08997 * 109.57105 * 295.38828 * 12 10 9 35 35 H 1.08999 * 109.57604 * 55.77927 * 12 10 9 36 36 H 1.09006 * 111.23624 * 315.59875 * 15 13 12 37 37 H 1.09001 * 111.23817 * 191.15408 * 15 13 12 38 38 H 1.09003 * 109.53419 * 304.70577 * 18 10 9 39 39 H 1.08998 * 109.53596 * 64.93039 * 18 10 9 40 40 H 1.08004 * 120.41968 * 359.97438 * 24 23 22 41 41 H 1.07992 * 120.78982 * 180.25683 * 25 24 23 42 42 H 1.08002 * 120.42161 * 179.75284 * 26 25 24 43 43 H 1.08007 * 119.62024 * 180.02562 * 27 26 25 44 44 H 1.09002 * 117.49814 * 359.97438 * 29 22 20 45 45 H 1.09003 * 117.50375 * 145.02021 * 29 22 20 46 46 H 1.08993 * 117.50251 * 214.97858 * 30 22 20 47 47 H 1.09000 * 117.49250 * 359.97438 * 30 22 20 48 48 H 1.08997 * 109.84781 * 241.63313 * 31 19 16 49 49 H 1.08995 * 109.93763 * 120.49180 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 1 2.9678 -3.5475 0.5923 12 6 1.1788 -4.7446 0.6224 13 6 1.9114 -6.0949 0.5188 14 1 1.4377 -6.8823 1.1051 15 6 2.0021 -6.4303 -0.9961 16 6 3.0906 -5.4178 -1.4411 17 1 3.5214 -5.6681 -2.4105 18 6 2.4292 -4.0284 -1.4352 19 7 4.0935 -5.4374 -0.3558 20 6 5.4033 -5.1474 -0.4858 21 8 5.8686 -4.9231 -1.5831 22 6 6.2894 -5.1019 0.7322 23 6 5.9799 -4.0072 1.7206 24 6 5.7571 -2.7205 1.2674 25 6 5.4673 -1.7220 2.1843 26 6 5.4236 -2.0542 3.5300 27 6 5.6631 -3.3612 3.9090 28 7 5.9302 -4.2868 3.0082 29 6 7.7563 -5.4987 0.5538 30 6 6.7938 -6.4347 1.2892 31 6 3.3912 -5.8408 0.8918 32 1 -0.4850 0.8401 -0.0004 33 1 0.3556 -2.3881 -0.0002 34 1 0.9924 -4.5096 1.6702 35 1 0.2324 -4.8002 0.0845 36 1 1.0549 -6.2387 -1.5004 37 1 2.3303 -7.4576 -1.1541 38 1 1.5293 -4.0505 -2.0499 39 1 3.1261 -3.2913 -1.8340 40 1 5.8040 -2.4967 0.2118 41 1 5.2846 -0.7086 1.8589 42 1 5.2047 -1.3010 4.2724 43 1 5.6305 -3.6282 4.9550 44 1 8.0803 -5.7930 -0.4444 45 1 8.4975 -4.9682 1.1517 46 1 6.9021 -6.5196 2.3704 47 1 6.4842 -7.3444 0.7748 48 1 3.4572 -5.0406 1.6289 49 1 3.8363 -6.7521 1.2909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094923931.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:01 Heat of formation + Delta-G solvation = 34.829875 kcal Electronic energy + Delta-G solvation = -31935.822236 eV Core-core repulsion = 28056.253323 eV Total energy + Delta-G solvation = -3879.568913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.26824 -41.18900 -39.81603 -37.38564 -36.54031 -34.14796 -33.38545 -32.84180 -32.11219 -31.80193 -29.58391 -27.04777 -26.10327 -25.66679 -24.55720 -24.10094 -23.21784 -22.48791 -21.97584 -20.51944 -19.89666 -19.15862 -18.71301 -17.62477 -17.23648 -17.08756 -16.73212 -16.41142 -16.13800 -16.05217 -15.50939 -15.29909 -14.89898 -14.86637 -14.65063 -14.36740 -14.20785 -14.04044 -13.83003 -13.57328 -13.49338 -13.22137 -12.97817 -12.88908 -12.83872 -12.77913 -12.45591 -12.28673 -12.16999 -11.95893 -11.77067 -11.75492 -11.62643 -11.36604 -11.03396 -10.96564 -10.83974 -10.81916 -10.48763 -9.87940 -9.68754 -9.01713 -7.97738 -5.24573 0.06193 0.26860 1.37382 1.39700 1.40455 1.46970 1.86207 2.50074 2.54379 2.94136 3.09067 3.30728 3.36354 3.50302 3.57764 3.69628 3.71893 3.88714 3.94102 4.00726 4.06776 4.18219 4.19380 4.23838 4.25643 4.35913 4.40820 4.44269 4.58945 4.60898 4.65307 4.67791 4.73933 4.78084 4.83548 4.87471 4.91581 5.01676 5.09467 5.14651 5.20415 5.20584 5.27300 5.28910 5.32733 5.44359 5.50114 5.52587 5.69899 6.25278 6.47863 6.91847 7.04893 7.31299 8.07714 8.32132 9.25557 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009640 B = 0.005567 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.009858 B = 5028.305305 C = 6534.716369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.069 4.069 3 Si 0.955 3.045 4 H -0.294 1.294 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.225 4.225 8 H 0.058 0.942 9 N -0.734 5.734 10 C 0.182 3.818 11 H 0.031 0.969 12 C -0.116 4.116 13 C -0.083 4.083 14 H 0.143 0.857 15 C -0.111 4.111 16 C 0.129 3.871 17 H 0.085 0.915 18 C -0.134 4.134 19 N -0.600 5.600 20 C 0.569 3.431 21 O -0.582 6.582 22 C -0.135 4.135 23 C 0.169 3.831 24 C -0.175 4.175 25 C -0.077 4.077 26 C -0.170 4.170 27 C 0.104 3.896 28 N -0.477 5.477 29 C -0.130 4.130 30 C -0.108 4.108 31 C 0.110 3.890 32 H 0.250 0.750 33 H 0.373 0.627 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.013 0.987 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.160 0.840 43 H 0.196 0.804 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.128 0.872 47 H 0.113 0.887 48 H 0.050 0.950 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.113 -17.308 8.248 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.261 4.261 3 Si 0.785 3.215 4 H -0.222 1.222 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.357 4.357 8 H 0.076 0.924 9 N -0.374 5.374 10 C 0.073 3.927 11 H 0.049 0.951 12 C -0.155 4.155 13 C -0.101 4.101 14 H 0.161 0.839 15 C -0.149 4.149 16 C 0.025 3.975 17 H 0.103 0.897 18 C -0.175 4.175 19 N -0.331 5.331 20 C 0.357 3.643 21 O -0.462 6.462 22 C -0.139 4.139 23 C 0.032 3.968 24 C -0.195 4.195 25 C -0.103 4.103 26 C -0.189 4.189 27 C -0.053 4.053 28 N -0.186 5.186 29 C -0.168 4.168 30 C -0.145 4.145 31 C -0.011 4.011 32 H 0.059 0.941 33 H 0.205 0.795 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.032 0.968 40 H 0.118 0.882 41 H 0.143 0.857 42 H 0.178 0.822 43 H 0.213 0.787 44 H 0.122 0.878 45 H 0.129 0.871 46 H 0.146 0.854 47 H 0.131 0.869 48 H 0.069 0.931 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.732 -17.873 7.982 22.323 hybrid contribution -0.302 3.145 -1.042 3.327 sum 10.430 -14.728 6.940 19.336 Atomic orbital electron populations 1.69781 1.06224 1.25797 1.59877 1.25352 0.96235 1.00325 1.04192 0.85411 0.78176 0.80671 0.77283 1.22213 1.21669 1.19283 1.19344 0.90525 0.85441 1.40377 0.92377 1.42621 1.05341 1.00924 1.88487 1.20384 0.94007 0.85408 0.92869 0.95057 1.22055 0.98766 0.94048 1.00583 1.22694 0.92903 0.97205 0.97345 0.83915 1.23023 0.98014 0.98645 0.95231 1.22339 0.88335 0.95518 0.91309 0.89660 1.22642 0.99048 0.95579 1.00244 1.48933 1.06415 1.66055 1.11714 1.19202 0.81038 0.75383 0.88670 1.90658 1.74552 1.52021 1.28980 1.19799 0.98979 0.99866 0.95223 1.19604 0.95918 0.90549 0.90702 1.21764 1.02738 0.94912 1.00128 1.21719 0.94536 0.99708 0.94346 1.22449 1.00782 0.99599 0.96078 1.23311 0.93320 0.88331 1.00312 1.67360 1.13518 1.36954 1.00783 1.23116 0.88858 1.01860 1.02984 1.23139 0.98562 0.90315 1.02455 1.22550 0.92955 1.00179 0.85427 0.94070 0.79466 0.92291 0.91167 0.88625 0.88137 0.91730 0.96766 0.88199 0.85674 0.82235 0.78696 0.87756 0.87121 0.85369 0.86870 0.93116 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.19 13.06 21.65 0.28 -58.90 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.95 46.91 29.55 68.60 2.03 48.93 16 4 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.22 -12.73 9.92 84.03 0.83 -11.90 16 8 H 0.06 3.32 7.83 -2.91 -0.02 3.30 16 9 N -0.73 -37.33 5.11 -322.90 -1.65 -38.98 16 10 C 0.18 7.25 2.39 45.00 0.11 7.36 16 11 H 0.03 1.38 5.90 -2.39 -0.01 1.36 16 12 C -0.12 -3.48 4.95 30.93 0.15 -3.33 16 13 C -0.08 -1.71 4.33 -9.05 -0.04 -1.75 16 14 H 0.14 1.91 8.14 -2.38 -0.02 1.89 16 15 C -0.11 -2.28 6.18 32.17 0.20 -2.08 16 16 C 0.13 3.86 3.96 45.79 0.18 4.04 16 17 H 0.09 2.68 7.97 -2.39 -0.02 2.66 16 18 C -0.13 -5.17 5.28 30.89 0.16 -5.01 16 19 N -0.60 -17.92 2.42 -780.01 -1.89 -19.81 16 20 C 0.57 19.07 6.51 87.65 0.57 19.64 16 21 O -0.58 -23.80 16.93 -3.03 -0.05 -23.85 16 22 C -0.13 -3.71 1.64 -53.67 -0.09 -3.80 16 23 C 0.17 5.01 5.29 42.56 0.23 5.24 16 24 C -0.18 -6.06 9.40 22.36 0.21 -5.85 16 25 C -0.08 -2.47 10.18 22.47 0.23 -2.24 16 26 C -0.17 -4.23 10.11 22.36 0.23 -4.00 16 27 C 0.10 2.31 11.18 84.67 0.95 3.25 16 28 N -0.48 -12.15 9.36 -183.87 -1.72 -13.87 16 29 C -0.13 -2.96 9.76 30.62 0.30 -2.66 16 30 C -0.11 -2.09 9.73 30.62 0.30 -1.79 16 31 C 0.11 2.67 5.19 86.53 0.45 3.12 16 32 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.37 20.12 7.79 -92.71 -0.72 19.40 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 2.06 7.97 -2.39 -0.02 2.05 16 36 H 0.10 1.87 7.75 -2.38 -0.02 1.85 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 2.46 8.00 -2.39 -0.02 2.44 16 39 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.10 3.96 7.84 -2.91 -0.02 3.93 16 41 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 43 H 0.20 2.67 8.06 -2.91 -0.02 2.64 16 44 H 0.10 2.44 8.00 -2.39 -0.02 2.42 16 45 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.13 2.23 7.59 -2.39 -0.02 2.21 16 47 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.05 1.49 6.10 -2.39 -0.01 1.48 16 49 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -74.57 391.45 2.66 -71.91 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: 0.23 Total: 39.85 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 5.43 Total: -5.28 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -4.98 Total: -131.57 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Total: -74.57 2.66 -71.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094923931.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.739 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds