Wall clock time and date at job start Wed Apr 1 2020 00:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48505 * 109.46973 * 270.00470 * 3 2 1 5 5 H 1.48497 * 109.46852 * 29.99821 * 3 2 1 6 6 H 1.48493 * 109.46974 * 150.00071 * 3 2 1 7 7 C 1.38814 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00007 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00218 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00248 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.31839 * 34.64212 * 10 9 7 12 12 C 1.52625 * 109.24031 * 154.31608 * 10 9 7 13 13 C 1.53970 * 108.85605 * 175.92999 * 12 10 9 14 14 H 1.09005 * 113.67440 * 168.18896 * 13 12 10 15 15 C 1.55429 * 106.41557 * 293.44934 * 13 12 10 16 16 C 1.55415 * 100.24819 * 73.22044 * 15 13 12 17 17 H 1.09008 * 112.48001 * 162.86356 * 16 15 13 18 18 C 1.52978 * 109.32622 * 275.00095 * 10 9 7 19 19 N 1.47791 * 104.13673 * 40.83147 * 16 15 13 20 20 C 1.34776 * 125.85891 * 153.48703 * 19 16 15 21 21 O 1.21274 * 120.00353 * 4.98940 * 20 19 16 22 22 C 1.50698 * 119.99594 * 184.99949 * 20 19 16 23 23 C 1.50694 * 115.55472 * 65.68544 * 22 20 19 24 24 C 1.38676 * 120.41891 * 29.70513 * 23 22 20 25 25 C 1.38629 * 118.42276 * 179.97438 * 24 23 22 26 26 C 1.38230 * 119.15906 * 0.25088 * 25 24 23 27 27 N 1.31853 * 120.76283 * 359.49792 * 26 25 24 28 28 C 1.31887 * 121.73036 * 0.49061 * 27 26 25 29 29 C 1.53008 * 117.49668 * 211.35680 * 22 20 19 30 30 C 1.53002 * 117.49643 * 280.01260 * 22 20 19 31 31 C 1.47081 * 108.27991 * 333.21485 * 19 16 15 32 32 H 0.96996 * 119.99812 * 0.02562 * 1 2 3 33 33 H 0.97002 * 119.99450 * 359.97438 * 9 7 2 34 34 H 1.09005 * 109.86406 * 55.93849 * 12 10 9 35 35 H 1.09000 * 109.26475 * 295.56182 * 12 10 9 36 36 H 1.09000 * 111.23629 * 191.15158 * 15 13 12 37 37 H 1.08998 * 111.23489 * 315.60731 * 15 13 12 38 38 H 1.08994 * 109.53352 * 64.75189 * 18 10 9 39 39 H 1.09007 * 109.59029 * 304.56527 * 18 10 9 40 40 H 1.07999 * 120.78586 * 359.97438 * 24 23 22 41 41 H 1.07991 * 120.42241 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.61597 * 179.74934 * 26 25 24 43 43 H 1.07996 * 119.62044 * 179.75111 * 28 27 26 44 44 H 1.08997 * 117.50245 * 215.00218 * 29 22 20 45 45 H 1.09000 * 117.49630 * 0.02562 * 29 22 20 46 46 H 1.09001 * 117.50092 * 359.97438 * 30 22 20 47 47 H 1.09001 * 117.49952 * 145.00145 * 30 22 20 48 48 H 1.08999 * 109.97377 * 120.69892 * 31 19 16 49 49 H 1.08998 * 109.98127 * 241.94013 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0027 11 1 2.9712 -3.5466 0.5821 12 6 1.1848 -4.7423 0.6208 13 6 1.9211 -6.0909 0.5225 14 1 1.4672 -6.8820 1.1194 15 6 2.0039 -6.4368 -0.9906 16 6 3.0853 -5.4187 -1.4482 17 1 3.5184 -5.6769 -2.4147 18 6 2.4201 -4.0311 -1.4411 19 7 4.0838 -5.4386 -0.3589 20 6 5.3931 -5.1436 -0.4825 21 8 5.8265 -4.7402 -1.5409 22 6 6.3184 -5.3151 0.6945 23 6 6.5178 -6.7333 1.1633 24 6 6.4289 -7.7881 0.2674 25 6 6.6201 -9.0760 0.7433 26 6 6.8858 -9.2651 2.0866 27 7 6.9678 -8.2378 2.9090 28 6 6.7921 -6.9992 2.4914 29 6 7.5105 -4.3618 0.8008 30 6 6.3234 -4.2130 1.7557 31 6 3.4023 -5.8293 0.8846 32 1 -0.4850 0.8400 -0.0004 33 1 0.3555 -2.3880 -0.0016 34 1 0.2354 -4.8048 0.0890 35 1 1.0037 -4.5006 1.6682 36 1 2.3345 -7.4642 -1.1432 37 1 1.0531 -6.2518 -1.4904 38 1 3.1121 -3.2931 -1.8465 39 1 1.5167 -4.0569 -2.0506 40 1 6.2159 -7.6103 -0.7764 41 1 6.5577 -9.9212 0.0740 42 1 7.0319 -10.2656 2.4661 43 1 6.8630 -6.1833 3.1954 44 1 8.4388 -4.7604 1.2097 45 1 7.6250 -3.6103 0.0196 46 1 5.6577 -3.3636 1.6023 47 1 6.4709 -4.5137 2.7930 48 1 3.8530 -6.7364 1.2870 49 1 3.4708 -5.0238 1.6157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094984334.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:39 Heat of formation + Delta-G solvation = 53.533651 kcal Electronic energy + Delta-G solvation = -31143.466271 eV Core-core repulsion = 27264.708415 eV Total energy + Delta-G solvation = -3878.757857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.29720 -40.34880 -38.73636 -36.55222 -34.81221 -32.81331 -32.51574 -31.23894 -31.08812 -30.57236 -27.93088 -26.01545 -25.07386 -23.90425 -23.67671 -23.10258 -22.38717 -21.09162 -20.89512 -19.25947 -18.66260 -17.83145 -17.17394 -17.05624 -16.41368 -15.75293 -15.68331 -15.23181 -14.83604 -14.55838 -14.42656 -14.15029 -13.66465 -13.52186 -13.43034 -13.23145 -12.99596 -12.91768 -12.66025 -12.36348 -12.23396 -12.14317 -11.79578 -11.70255 -11.59805 -11.20418 -11.06075 -10.98350 -10.84014 -10.79689 -10.47614 -10.19563 -10.08445 -10.03022 -9.93372 -9.68471 -9.57704 -9.48351 -9.07212 -8.89821 -8.44927 -6.96436 -5.77443 -3.05912 0.78387 1.00004 2.59347 2.93910 3.36839 3.43285 3.49044 3.49811 3.78200 4.06535 4.31274 4.33810 4.51241 4.53838 4.58638 4.68136 4.69703 4.74503 4.75965 4.93648 4.97234 5.18587 5.30250 5.33348 5.35249 5.44355 5.49041 5.51517 5.57167 5.63864 5.71019 5.75512 5.78795 5.85080 5.90013 5.93261 5.97248 5.97415 6.01603 6.11686 6.21739 6.31806 6.39020 6.46455 6.54558 6.66272 6.97244 7.06913 7.64498 7.68484 7.69971 8.24672 8.41390 9.52664 10.09886 10.44612 11.45185 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.003601 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.124692 B = 7773.141192 C = 8636.342831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.067 0.933 9 N -0.724 5.724 10 C 0.181 3.819 11 H 0.048 0.952 12 C -0.121 4.121 13 C -0.098 4.098 14 H 0.097 0.903 15 C -0.127 4.127 16 C 0.134 3.866 17 H 0.090 0.910 18 C -0.143 4.143 19 N -0.597 5.597 20 C 0.569 3.431 21 O -0.535 6.535 22 C -0.120 4.120 23 C -0.082 4.082 24 C -0.064 4.064 25 C -0.166 4.166 26 C 0.091 3.909 27 N -0.479 5.479 28 C 0.101 3.899 29 C -0.132 4.132 30 C -0.153 4.153 31 C 0.108 3.892 32 H 0.255 0.745 33 H 0.383 0.617 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.058 0.942 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.644 -20.220 3.523 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.735 3.265 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.085 0.915 9 N -0.364 5.364 10 C 0.071 3.929 11 H 0.066 0.934 12 C -0.159 4.159 13 C -0.117 4.117 14 H 0.115 0.885 15 C -0.165 4.165 16 C 0.031 3.969 17 H 0.108 0.892 18 C -0.184 4.184 19 N -0.330 5.330 20 C 0.356 3.644 21 O -0.412 6.412 22 C -0.124 4.124 23 C -0.085 4.085 24 C -0.091 4.091 25 C -0.186 4.186 26 C -0.066 4.066 27 N -0.187 5.187 28 C -0.056 4.056 29 C -0.169 4.169 30 C -0.190 4.190 31 C -0.015 4.015 32 H 0.064 0.936 33 H 0.217 0.783 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.173 0.827 43 H 0.175 0.825 44 H 0.122 0.878 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.076 0.924 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.255 -19.964 3.863 23.241 hybrid contribution -0.119 1.099 -1.043 1.520 sum 11.136 -18.865 2.820 22.087 Atomic orbital electron populations 1.69654 1.05063 1.25603 1.57852 1.24711 0.95480 0.97593 1.03057 0.86238 0.78693 0.84006 0.77583 1.21729 1.21767 1.20775 1.19197 0.90842 0.84142 1.42490 0.91484 1.42437 1.05695 0.99775 1.88524 1.20160 0.94286 0.86017 0.92476 0.93363 1.22060 0.99088 0.93161 1.01636 1.22619 0.94216 0.98486 0.96409 0.88500 1.23087 0.99325 0.98148 0.95908 1.22428 0.87138 0.96844 0.90478 0.89177 1.22813 1.00051 0.94150 1.01425 1.48468 1.06789 1.66972 1.10794 1.18786 0.80689 0.77092 0.87794 1.90710 1.75703 1.45744 1.29030 1.20006 1.02918 0.90050 0.99421 1.19759 1.01010 0.92871 0.94813 1.21443 0.95450 0.92111 1.00046 1.22126 1.01477 0.97613 0.97377 1.22779 0.95591 0.98144 0.90074 1.67741 1.12805 0.99437 1.38711 1.22672 0.95376 0.94321 0.93191 1.23114 0.92002 0.99766 1.02038 1.23265 1.01854 0.98608 0.95309 1.22178 0.92530 0.99696 0.87084 0.93552 0.78349 0.91555 0.91622 0.91486 0.89501 0.91851 0.91574 0.85122 0.84669 0.82726 0.82545 0.87782 0.87096 0.87056 0.87346 0.92362 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.90 22.61 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.52 9.92 -15.06 -0.15 -6.67 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.72 -17.77 5.10 -53.62 -0.27 -18.05 16 10 C 0.18 3.44 2.39 -68.13 -0.16 3.28 16 11 H 0.05 0.97 5.86 -51.93 -0.30 0.67 16 12 C -0.12 -1.82 4.93 -26.42 -0.13 -1.95 16 13 C -0.10 -1.14 4.33 -87.93 -0.38 -1.52 16 14 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.13 -1.45 6.20 -24.16 -0.15 -1.60 16 16 C 0.13 1.94 3.97 -65.48 -0.26 1.68 16 17 H 0.09 1.33 8.07 -51.92 -0.42 0.91 16 18 C -0.14 -2.59 5.28 -26.28 -0.14 -2.73 16 19 N -0.60 -8.43 2.37 -161.67 -0.38 -8.81 16 20 C 0.57 8.73 6.00 -10.99 -0.07 8.66 16 21 O -0.54 -10.16 17.00 5.56 0.09 -10.06 16 22 C -0.12 -1.45 1.70 -156.81 -0.27 -1.72 16 23 C -0.08 -0.88 4.39 -104.48 -0.46 -1.34 16 24 C -0.06 -0.67 9.44 -39.28 -0.37 -1.04 16 25 C -0.17 -1.39 10.11 -39.44 -0.40 -1.79 16 26 C 0.09 0.80 11.18 -17.55 -0.20 0.60 16 27 N -0.48 -5.12 10.36 -13.25 -0.14 -5.25 16 28 C 0.10 1.03 10.52 -17.55 -0.18 0.85 16 29 C -0.13 -1.47 9.73 -26.69 -0.26 -1.73 16 30 C -0.15 -1.66 9.58 -26.69 -0.26 -1.92 16 31 C 0.11 1.32 5.10 -2.83 -0.01 1.31 16 32 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.38 9.97 7.79 -40.82 -0.32 9.65 16 34 H 0.07 1.00 7.97 -51.93 -0.41 0.59 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.97 7.76 -51.93 -0.40 0.56 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.07 1.20 8.01 -51.93 -0.42 0.78 16 40 H 0.13 1.43 7.43 -52.49 -0.39 1.04 16 41 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 42 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.16 1.33 5.97 -52.49 -0.31 1.02 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.11 1.39 8.00 -51.93 -0.42 0.98 16 46 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 47 H 0.11 0.90 6.13 -51.93 -0.32 0.58 16 48 H 0.06 0.65 7.24 -51.93 -0.38 0.27 16 49 H 0.08 1.00 6.75 -51.93 -0.35 0.65 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -33.06 387.16 -10.47 -43.53 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.37 Total: 10.62 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -3.94 Total: -8.08 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.07 Total: -59.42 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.06 -10.47 -43.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094984334.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.060 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds