Wall clock time and date at job start Wed Apr 1 2020 00:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48505 * 109.46973 * 270.00470 * 3 2 1 5 5 H 1.48497 * 109.46852 * 29.99821 * 3 2 1 6 6 H 1.48493 * 109.46974 * 150.00071 * 3 2 1 7 7 C 1.38814 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00007 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00218 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00248 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.31839 * 34.64212 * 10 9 7 12 12 C 1.52625 * 109.24031 * 154.31608 * 10 9 7 13 13 C 1.53970 * 108.85605 * 175.92999 * 12 10 9 14 14 H 1.09005 * 113.67440 * 168.18896 * 13 12 10 15 15 C 1.55429 * 106.41557 * 293.44934 * 13 12 10 16 16 C 1.55415 * 100.24819 * 73.22044 * 15 13 12 17 17 H 1.09008 * 112.48001 * 162.86356 * 16 15 13 18 18 C 1.52978 * 109.32622 * 275.00095 * 10 9 7 19 19 N 1.47791 * 104.13673 * 40.83147 * 16 15 13 20 20 C 1.34776 * 125.85891 * 153.48703 * 19 16 15 21 21 O 1.21274 * 120.00353 * 4.98940 * 20 19 16 22 22 C 1.50698 * 119.99594 * 184.99949 * 20 19 16 23 23 C 1.50694 * 115.55472 * 65.68544 * 22 20 19 24 24 C 1.38676 * 120.41891 * 29.70513 * 23 22 20 25 25 C 1.38629 * 118.42276 * 179.97438 * 24 23 22 26 26 C 1.38230 * 119.15906 * 0.25088 * 25 24 23 27 27 N 1.31853 * 120.76283 * 359.49792 * 26 25 24 28 28 C 1.31887 * 121.73036 * 0.49061 * 27 26 25 29 29 C 1.53008 * 117.49668 * 211.35680 * 22 20 19 30 30 C 1.53002 * 117.49643 * 280.01260 * 22 20 19 31 31 C 1.47081 * 108.27991 * 333.21485 * 19 16 15 32 32 H 0.96996 * 119.99812 * 0.02562 * 1 2 3 33 33 H 0.97002 * 119.99450 * 359.97438 * 9 7 2 34 34 H 1.09005 * 109.86406 * 55.93849 * 12 10 9 35 35 H 1.09000 * 109.26475 * 295.56182 * 12 10 9 36 36 H 1.09000 * 111.23629 * 191.15158 * 15 13 12 37 37 H 1.08998 * 111.23489 * 315.60731 * 15 13 12 38 38 H 1.08994 * 109.53352 * 64.75189 * 18 10 9 39 39 H 1.09007 * 109.59029 * 304.56527 * 18 10 9 40 40 H 1.07999 * 120.78586 * 359.97438 * 24 23 22 41 41 H 1.07991 * 120.42241 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.61597 * 179.74934 * 26 25 24 43 43 H 1.07996 * 119.62044 * 179.75111 * 28 27 26 44 44 H 1.08997 * 117.50245 * 215.00218 * 29 22 20 45 45 H 1.09000 * 117.49630 * 0.02562 * 29 22 20 46 46 H 1.09001 * 117.50092 * 359.97438 * 30 22 20 47 47 H 1.09001 * 117.49952 * 145.00145 * 30 22 20 48 48 H 1.08999 * 109.97377 * 120.69892 * 31 19 16 49 49 H 1.08998 * 109.98127 * 241.94013 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0027 11 1 2.9712 -3.5466 0.5821 12 6 1.1848 -4.7423 0.6208 13 6 1.9211 -6.0909 0.5225 14 1 1.4672 -6.8820 1.1194 15 6 2.0039 -6.4368 -0.9906 16 6 3.0853 -5.4187 -1.4482 17 1 3.5184 -5.6769 -2.4147 18 6 2.4201 -4.0311 -1.4411 19 7 4.0838 -5.4386 -0.3589 20 6 5.3931 -5.1436 -0.4825 21 8 5.8265 -4.7402 -1.5409 22 6 6.3184 -5.3151 0.6945 23 6 6.5178 -6.7333 1.1633 24 6 6.4289 -7.7881 0.2674 25 6 6.6201 -9.0760 0.7433 26 6 6.8858 -9.2651 2.0866 27 7 6.9678 -8.2378 2.9090 28 6 6.7921 -6.9992 2.4914 29 6 7.5105 -4.3618 0.8008 30 6 6.3234 -4.2130 1.7557 31 6 3.4023 -5.8293 0.8846 32 1 -0.4850 0.8400 -0.0004 33 1 0.3555 -2.3880 -0.0016 34 1 0.2354 -4.8048 0.0890 35 1 1.0037 -4.5006 1.6682 36 1 2.3345 -7.4642 -1.1432 37 1 1.0531 -6.2518 -1.4904 38 1 3.1121 -3.2931 -1.8465 39 1 1.5167 -4.0569 -2.0506 40 1 6.2159 -7.6103 -0.7764 41 1 6.5577 -9.9212 0.0740 42 1 7.0319 -10.2656 2.4661 43 1 6.8630 -6.1833 3.1954 44 1 8.4388 -4.7604 1.2097 45 1 7.6250 -3.6103 0.0196 46 1 5.6577 -3.3636 1.6023 47 1 6.4709 -4.5137 2.7930 48 1 3.8530 -6.7364 1.2870 49 1 3.4708 -5.0238 1.6157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094984334.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:38 Heat of formation + Delta-G solvation = 33.765281 kcal Electronic energy + Delta-G solvation = -31144.323492 eV Core-core repulsion = 27264.708415 eV Total energy + Delta-G solvation = -3879.615077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.36669 -41.25671 -39.83719 -37.61119 -36.58098 -34.23104 -33.40989 -32.81511 -31.95516 -31.75662 -29.60046 -27.09857 -26.09985 -25.67025 -24.64419 -24.06326 -23.26690 -22.49395 -21.96075 -20.52567 -19.83154 -19.16152 -18.73173 -17.96860 -17.38866 -17.02661 -16.74833 -16.26076 -16.23293 -15.89449 -15.52681 -15.15843 -15.03686 -14.93709 -14.56403 -14.40419 -14.19969 -13.99959 -13.85350 -13.57500 -13.51251 -13.22200 -13.01871 -12.94761 -12.84821 -12.80802 -12.49790 -12.29915 -12.17584 -12.08726 -11.96231 -11.74722 -11.62238 -11.35652 -11.06519 -11.02112 -10.86533 -10.69174 -10.35455 -9.82017 -9.67984 -9.02653 -7.98948 -5.26265 0.08568 0.27891 1.40639 1.41866 1.42403 1.50246 1.84355 2.50925 2.54791 2.96512 3.27791 3.28894 3.34208 3.49063 3.59609 3.67059 3.69175 3.75228 3.81614 3.94344 4.03860 4.06905 4.19199 4.24642 4.29702 4.35034 4.40347 4.44804 4.56021 4.58645 4.60141 4.66803 4.73900 4.81263 4.84388 4.86406 4.88798 5.01597 5.06340 5.09109 5.14313 5.20570 5.27500 5.29396 5.34864 5.43569 5.50373 5.54348 5.72193 6.24581 6.48926 6.99657 7.05015 7.30508 8.07468 8.30824 9.24066 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.003601 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.124692 B = 7773.141192 C = 8636.342831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.069 4.069 3 Si 0.962 3.038 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.236 4.236 8 H 0.059 0.941 9 N -0.735 5.735 10 C 0.179 3.821 11 H 0.034 0.966 12 C -0.114 4.114 13 C -0.082 4.082 14 H 0.138 0.862 15 C -0.113 4.113 16 C 0.132 3.868 17 H 0.085 0.915 18 C -0.133 4.133 19 N -0.596 5.596 20 C 0.561 3.439 21 O -0.584 6.584 22 C -0.121 4.121 23 C -0.088 4.088 24 C -0.077 4.077 25 C -0.157 4.157 26 C 0.091 3.909 27 N -0.497 5.497 28 C 0.100 3.900 29 C -0.133 4.133 30 C -0.144 4.144 31 C 0.107 3.893 32 H 0.252 0.748 33 H 0.374 0.626 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.014 0.986 39 H 0.063 0.937 40 H 0.118 0.882 41 H 0.163 0.837 42 H 0.184 0.816 43 H 0.170 0.830 44 H 0.129 0.871 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.140 0.860 48 H 0.081 0.919 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.145 -23.481 5.142 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.792 3.208 4 H -0.219 1.219 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.368 4.368 8 H 0.077 0.923 9 N -0.375 5.375 10 C 0.071 3.929 11 H 0.052 0.948 12 C -0.152 4.152 13 C -0.101 4.101 14 H 0.156 0.844 15 C -0.151 4.151 16 C 0.028 3.972 17 H 0.103 0.897 18 C -0.175 4.175 19 N -0.327 5.327 20 C 0.350 3.650 21 O -0.465 6.465 22 C -0.125 4.125 23 C -0.091 4.091 24 C -0.103 4.103 25 C -0.176 4.176 26 C -0.065 4.065 27 N -0.206 5.206 28 C -0.056 4.056 29 C -0.170 4.170 30 C -0.181 4.181 31 C -0.015 4.015 32 H 0.061 0.939 33 H 0.206 0.794 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.033 0.967 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.180 0.820 42 H 0.201 0.799 43 H 0.187 0.813 44 H 0.147 0.853 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.158 0.842 48 H 0.099 0.901 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.769 -23.269 5.505 26.651 hybrid contribution -0.232 2.065 -1.600 2.623 sum 11.537 -21.204 3.905 24.453 Atomic orbital electron populations 1.69782 1.06238 1.25977 1.59512 1.25414 0.96335 1.00564 1.03867 0.85305 0.77886 0.80318 0.77317 1.21899 1.21510 1.19815 1.19410 0.90661 0.85670 1.41026 0.92318 1.42620 1.05403 1.00902 1.88572 1.20353 0.94155 0.85403 0.92974 0.94780 1.21952 0.98658 0.93695 1.00890 1.22671 0.93032 0.97186 0.97207 0.84381 1.23073 0.98209 0.98421 0.95357 1.22392 0.88255 0.95451 0.91055 0.89684 1.22620 0.99039 0.95554 1.00244 1.48567 1.06540 1.66136 1.11476 1.19418 0.81377 0.76045 0.88129 1.90675 1.76674 1.47970 1.31158 1.19900 1.02526 0.91595 0.98473 1.19614 1.02393 0.91708 0.95341 1.21485 0.96257 0.93110 0.99479 1.22382 1.00012 0.97460 0.97758 1.23304 0.94226 0.98952 0.90044 1.67802 1.13466 0.99852 1.39456 1.22806 0.95139 0.94792 0.92909 1.23157 0.93065 0.99215 1.01600 1.23281 1.00867 0.97234 0.96699 1.22297 0.93115 1.00205 0.85889 0.93940 0.79387 0.91220 0.91836 0.88449 0.88694 0.96656 0.91849 0.86386 0.81975 0.79867 0.81326 0.85287 0.89399 0.89652 0.84216 0.90056 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.33 13.06 21.65 0.28 -59.05 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.96 47.59 29.55 68.60 2.03 49.62 16 4 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.24 -13.51 9.92 84.03 0.83 -12.68 16 8 H 0.06 3.40 7.83 -2.91 -0.02 3.37 16 9 N -0.74 -37.36 5.10 -323.56 -1.65 -39.01 16 10 C 0.18 7.00 2.39 44.86 0.11 7.11 16 11 H 0.03 1.43 5.86 -2.39 -0.01 1.42 16 12 C -0.11 -3.27 4.93 30.80 0.15 -3.12 16 13 C -0.08 -1.62 4.33 -9.05 -0.04 -1.66 16 14 H 0.14 1.81 8.14 -2.38 -0.02 1.79 16 15 C -0.11 -2.22 6.20 32.26 0.20 -2.02 16 16 C 0.13 3.81 3.97 45.87 0.18 3.99 16 17 H 0.09 2.56 8.07 -2.38 -0.02 2.54 16 18 C -0.13 -5.04 5.28 30.88 0.16 -4.87 16 19 N -0.60 -16.72 2.37 -783.78 -1.85 -18.58 16 20 C 0.56 17.76 6.00 87.66 0.53 18.29 16 21 O -0.58 -23.59 17.00 -3.01 -0.05 -23.64 16 22 C -0.12 -2.91 1.70 -53.67 -0.09 -3.00 16 23 C -0.09 -1.74 4.39 -19.77 -0.09 -1.83 16 24 C -0.08 -1.44 9.44 22.47 0.21 -1.23 16 25 C -0.16 -2.09 10.11 22.36 0.23 -1.87 16 26 C 0.09 1.25 11.18 84.69 0.95 2.20 16 27 N -0.50 -9.06 10.36 -195.84 -2.03 -11.09 16 28 C 0.10 1.77 10.52 84.67 0.89 2.66 16 29 C -0.13 -2.99 9.73 30.62 0.30 -2.69 16 30 C -0.14 -3.09 9.58 30.62 0.29 -2.79 16 31 C 0.11 2.40 5.10 86.85 0.44 2.84 16 32 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.37 20.08 7.79 -92.71 -0.72 19.36 16 34 H 0.07 1.99 7.97 -2.38 -0.02 1.97 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.80 7.76 -2.39 -0.02 1.78 16 38 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 2.38 8.01 -2.38 -0.02 2.36 16 40 H 0.12 2.49 7.43 -2.91 -0.02 2.47 16 41 H 0.16 1.23 8.06 -2.92 -0.02 1.21 16 42 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.17 2.39 5.97 -2.91 -0.02 2.38 16 44 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.09 2.37 8.00 -2.39 -0.02 2.35 16 46 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.14 2.06 6.13 -2.39 -0.01 2.05 16 48 H 0.08 1.52 7.24 -2.39 -0.02 1.51 16 49 H 0.06 1.63 6.75 -2.39 -0.02 1.61 16 Total: -1.00 -75.89 387.16 2.69 -73.19 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: 0.25 Total: 32.83 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 5.72 Total: -4.27 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -5.25 Total: -127.73 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -75.89 2.69 -73.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094984334.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.957 kcal (2) G-P(sol) polarization free energy of solvation -75.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds