Wall clock time and date at job start Wed Apr 1 2020 01:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48498 * 109.47391 * 270.00166 * 3 2 1 5 5 H 1.48501 * 109.47300 * 30.00598 * 3 2 1 6 6 H 1.48500 * 109.46855 * 150.00337 * 3 2 1 7 7 C 1.38812 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99968 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00378 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00351 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.17554 * 51.22950 * 10 9 7 12 12 C 1.53036 * 109.32157 * 291.67170 * 10 9 7 13 13 C 1.53964 * 108.83159 * 295.14016 * 12 10 9 14 14 H 1.08999 * 112.99536 * 168.09079 * 13 12 10 15 15 C 1.55431 * 106.41676 * 293.82703 * 13 12 10 16 16 C 1.55446 * 100.23430 * 73.19260 * 15 13 12 17 17 H 1.09003 * 113.04471 * 163.21032 * 16 15 13 18 18 C 1.52991 * 109.32332 * 170.78640 * 10 9 7 19 19 N 1.47785 * 104.11736 * 40.86809 * 16 15 13 20 20 C 1.34779 * 125.85455 * 153.44110 * 19 16 15 21 21 O 1.21517 * 120.00418 * 359.71949 * 20 19 16 22 22 C 1.48175 * 119.99912 * 179.71674 * 20 19 16 23 23 C 1.39304 * 119.72100 * 179.72399 * 22 20 19 24 24 C 1.38589 * 119.05851 * 180.27491 * 23 22 20 25 25 C 1.38634 * 118.48840 * 0.02562 * 24 23 22 26 26 C 1.50697 * 120.32244 * 180.02562 * 25 24 23 27 27 C 1.53005 * 117.49493 * 188.72885 * 26 25 24 28 28 C 1.52998 * 117.49851 * 120.06899 * 26 25 24 29 29 C 1.38562 * 119.34875 * 359.97438 * 25 24 23 30 30 N 1.31512 * 120.90420 * 0.02562 * 29 25 24 31 31 C 1.47077 * 108.28897 * 333.17980 * 19 16 15 32 32 H 0.96999 * 120.00387 * 359.97438 * 1 2 3 33 33 H 0.97007 * 119.99905 * 0.02562 * 9 7 2 34 34 H 1.09000 * 109.57218 * 175.33649 * 12 10 9 35 35 H 1.08998 * 109.68383 * 55.01028 * 12 10 9 36 36 H 1.08996 * 111.23334 * 191.15210 * 15 13 12 37 37 H 1.08998 * 111.22864 * 315.59893 * 15 13 12 38 38 H 1.09002 * 109.52630 * 185.06483 * 18 10 9 39 39 H 1.08998 * 109.53075 * 305.20688 * 18 10 9 40 40 H 1.07999 * 120.47318 * 0.26203 * 23 22 20 41 41 H 1.07998 * 120.75962 * 180.02562 * 24 23 22 42 42 H 1.08998 * 115.55526 * 334.39315 * 26 25 24 43 43 H 1.08998 * 117.49997 * 359.97438 * 27 26 25 44 44 H 1.08998 * 117.49718 * 145.01992 * 27 26 25 45 45 H 1.08997 * 117.50314 * 214.97689 * 28 26 25 46 46 H 1.08998 * 117.50180 * 359.97438 * 28 26 25 47 47 H 1.07999 * 119.54403 * 179.97438 * 29 25 24 48 48 H 1.08999 * 109.97846 * 120.72066 * 31 19 16 49 49 H 1.09002 * 109.98033 * 241.96468 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.7953 -3.6446 0.8021 12 6 2.7731 -3.8287 -1.3426 13 6 1.7170 -3.9537 -2.4560 14 1 2.1414 -3.8721 -3.4566 15 6 0.9630 -5.2882 -2.1984 16 6 0.1137 -4.8908 -0.9586 17 1 -0.7122 -5.5766 -0.7695 18 6 1.0770 -4.8078 0.2306 19 7 -0.3488 -3.5206 -1.2628 20 6 -1.4684 -2.9412 -0.7859 21 8 -2.2012 -3.5587 -0.0387 22 6 -1.8058 -1.5512 -1.1728 23 6 -2.9674 -0.9601 -0.6810 24 6 -3.2726 0.3387 -1.0563 25 6 -2.4052 1.0011 -1.9112 26 6 -2.6965 2.4145 -2.3453 27 6 -1.8141 3.0122 -3.4432 28 6 -1.6637 3.4879 -1.9959 29 6 -1.2673 0.3512 -2.3616 30 7 -1.0018 -0.8819 -1.9895 31 6 0.6253 -2.8953 -2.1701 32 1 -0.4851 0.8400 0.0004 33 1 0.3555 -2.3881 -0.0005 34 1 3.3855 -4.7300 -1.3173 35 1 3.4059 -2.9624 -1.5351 36 1 0.3311 -5.5545 -3.0457 37 1 1.6570 -6.0935 -1.9576 38 1 1.6282 -5.7438 0.3210 39 1 0.5127 -4.6274 1.1456 40 1 -3.6210 -1.5061 -0.0170 41 1 -4.1658 0.8237 -0.6912 42 1 -3.7473 2.7036 -2.3312 43 1 -1.0228 2.3834 -3.8510 44 1 -2.2844 3.6949 -4.1509 45 1 -2.0350 4.4832 -1.7522 46 1 -0.7737 3.1719 -1.4517 47 1 -0.5896 0.8642 -3.0279 48 1 0.1356 -2.6050 -3.0996 49 1 1.0693 -2.0208 -1.6945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095048124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:09 Heat of formation + Delta-G solvation = 123.511791 kcal Electronic energy + Delta-G solvation = -32865.905477 eV Core-core repulsion = 28990.182100 eV Total energy + Delta-G solvation = -3875.723377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.94254 -39.47589 -37.64044 -36.43889 -34.09337 -32.84925 -31.39061 -31.10056 -30.70472 -29.80936 -27.60525 -25.13266 -24.35413 -23.58053 -23.08922 -22.02996 -21.73740 -21.06151 -20.15210 -19.16145 -18.40364 -17.50164 -16.58706 -16.38342 -15.41623 -15.11761 -14.87647 -14.56491 -14.41102 -14.14223 -13.86713 -13.73386 -13.11444 -12.96407 -12.84028 -12.56040 -12.37569 -12.29829 -12.01984 -11.99215 -11.69839 -11.49786 -11.37386 -11.33770 -11.12468 -11.02103 -10.87928 -10.59562 -10.55373 -10.23543 -10.17979 -10.12343 -9.83291 -9.63954 -9.45821 -9.31053 -8.91722 -8.44991 -8.29853 -7.96464 -7.58466 -6.53086 -5.73741 -3.01443 1.60181 2.25947 3.37177 3.43952 3.45751 3.53138 3.73318 4.13584 4.55821 4.73469 4.93193 4.97171 5.09090 5.16952 5.24627 5.25771 5.32598 5.45573 5.51177 5.57617 5.64216 5.69204 5.77949 5.81683 5.85803 5.89676 5.95378 5.97318 6.04558 6.07862 6.13103 6.25328 6.27411 6.30503 6.34847 6.43884 6.46877 6.57227 6.67439 6.77177 6.82846 6.90571 6.96382 6.96967 6.99542 7.20268 7.53588 7.69325 7.92136 8.33801 8.40602 8.75683 9.10427 9.52631 10.10615 10.49694 11.39695 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.005807 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.450591 B = 4820.260155 C = 5962.182187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.003 4.003 3 Si 0.895 3.105 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.067 0.933 9 N -0.723 5.723 10 C 0.172 3.828 11 H 0.033 0.967 12 C -0.127 4.127 13 C -0.101 4.101 14 H 0.083 0.917 15 C -0.127 4.127 16 C 0.132 3.868 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.578 5.578 20 C 0.589 3.411 21 O -0.566 6.566 22 C 0.130 3.870 23 C -0.113 4.113 24 C -0.088 4.088 25 C -0.102 4.102 26 C -0.104 4.104 27 C -0.180 4.180 28 C -0.171 4.171 29 C 0.116 3.884 30 N -0.372 5.372 31 C 0.085 3.915 32 H 0.255 0.745 33 H 0.393 0.607 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.136 0.864 48 H 0.040 0.960 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 -1.662 -7.421 7.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.200 4.200 3 Si 0.727 3.273 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.212 1.212 7 C -0.369 4.369 8 H 0.085 0.915 9 N -0.374 5.374 10 C 0.062 3.938 11 H 0.051 0.949 12 C -0.167 4.167 13 C -0.120 4.120 14 H 0.102 0.898 15 C -0.165 4.165 16 C 0.029 3.971 17 H 0.106 0.894 18 C -0.173 4.173 19 N -0.310 5.310 20 C 0.379 3.621 21 O -0.446 6.446 22 C -0.009 4.009 23 C -0.134 4.134 24 C -0.114 4.114 25 C -0.105 4.105 26 C -0.123 4.123 27 C -0.216 4.216 28 C -0.208 4.208 29 C -0.044 4.044 30 N -0.082 5.082 31 C -0.036 4.036 32 H 0.066 0.934 33 H 0.237 0.763 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.116 0.884 47 H 0.154 0.846 48 H 0.059 0.941 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.878 -2.255 -7.241 7.813 hybrid contribution -0.315 1.565 0.679 1.735 sum -2.193 -0.689 -6.562 6.953 Atomic orbital electron populations 1.69829 1.04652 1.25089 1.56045 1.24543 0.95388 0.96855 1.03172 0.86371 0.78856 0.84631 0.77463 1.21693 1.22029 1.21222 1.19192 0.91060 0.84388 1.42239 0.91540 1.43667 1.07218 0.99512 1.86963 1.20192 0.92716 0.86631 0.94276 0.94892 1.22264 0.97181 1.00252 0.97035 1.22609 0.96613 0.94460 0.98338 0.89841 1.23042 0.98527 0.97873 0.97072 1.22094 0.95480 0.84553 0.94994 0.89450 1.22171 0.97932 0.98966 0.98276 1.48465 1.22089 1.13778 1.46712 1.17695 0.79419 0.85272 0.79713 1.90682 1.51215 1.64802 1.37862 1.20147 0.91242 0.93115 0.96419 1.21649 0.97604 0.95064 0.99127 1.20900 0.99170 0.94085 0.97278 1.19981 0.97241 0.94189 0.99103 1.20873 0.96531 0.91372 1.03550 1.23037 1.03099 1.03734 0.91769 1.23019 1.01427 0.98079 0.98299 1.22085 0.93701 0.91241 0.97326 1.67550 1.24129 1.07937 1.08597 1.23393 0.87748 1.00373 0.92101 0.93413 0.76279 0.93574 0.91539 0.91720 0.90600 0.91388 0.91811 0.85556 0.86213 0.87554 0.88294 0.88854 0.88946 0.88445 0.84628 0.94130 0.80725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.33 7.56 55.49 0.42 -22.91 16 2 C 0.00 -0.07 5.38 -17.43 -0.09 -0.16 16 3 Si 0.89 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.05 7.91 -15.06 -0.12 -6.17 16 8 H 0.07 1.69 7.73 -52.48 -0.41 1.28 16 9 N -0.72 -17.05 2.79 -53.41 -0.15 -17.20 16 10 C 0.17 3.39 3.13 -67.91 -0.21 3.18 16 11 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 12 C -0.13 -2.17 5.19 -26.21 -0.14 -2.31 16 13 C -0.10 -1.65 4.33 -87.93 -0.38 -2.03 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 15 C -0.13 -1.85 6.20 -24.14 -0.15 -2.00 16 16 C 0.13 2.33 3.95 -65.79 -0.26 2.07 16 17 H 0.09 1.52 8.01 -51.93 -0.42 1.11 16 18 C -0.13 -2.40 5.40 -26.60 -0.14 -2.54 16 19 N -0.58 -11.85 1.73 -162.99 -0.28 -12.14 16 20 C 0.59 13.48 6.13 -12.18 -0.07 13.40 16 21 O -0.57 -13.88 16.57 5.35 0.09 -13.79 16 22 C 0.13 2.85 4.65 -83.01 -0.39 2.46 16 23 C -0.11 -2.28 9.63 -39.06 -0.38 -2.66 16 24 C -0.09 -1.54 9.88 -39.31 -0.39 -1.93 16 25 C -0.10 -1.76 5.17 -104.36 -0.54 -2.30 16 26 C -0.10 -1.46 6.06 -91.77 -0.56 -2.02 16 27 C -0.18 -2.26 9.87 -26.69 -0.26 -2.52 16 28 C -0.17 -2.40 10.17 -26.69 -0.27 -2.67 16 29 C 0.12 2.22 8.60 -17.57 -0.15 2.07 16 30 N -0.37 -7.88 5.18 -9.80 -0.05 -7.93 16 31 C 0.09 1.69 3.91 -2.83 -0.01 1.68 16 32 H 0.25 6.59 7.16 -40.82 -0.29 6.29 16 33 H 0.39 9.75 3.00 -40.82 -0.12 9.63 16 34 H 0.05 0.67 7.97 -51.93 -0.41 0.26 16 35 H 0.07 1.22 7.65 -51.93 -0.40 0.83 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.95 7.75 -51.93 -0.40 0.54 16 38 H 0.07 0.99 8.00 -51.93 -0.42 0.58 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.13 2.47 7.64 -52.49 -0.40 2.07 16 41 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.10 1.29 6.20 -51.93 -0.32 0.97 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 47 H 0.14 2.44 6.03 -52.49 -0.32 2.12 16 48 H 0.04 0.81 7.43 -51.93 -0.39 0.42 16 49 H 0.18 4.04 3.26 -58.31 -0.19 3.85 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -28.35 361.29 -11.15 -39.49 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -7.08 Total: 17.55 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -4.51 Total: -4.44 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.06 Total: -60.18 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.79 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.35 -11.15 -39.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095048124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.004 kcal (2) G-P(sol) polarization free energy of solvation -28.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds