Wall clock time and date at job start Wed Apr 1 2020 01:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48498 * 109.47391 * 270.00166 * 3 2 1 5 5 H 1.48501 * 109.47300 * 30.00598 * 3 2 1 6 6 H 1.48500 * 109.46855 * 150.00337 * 3 2 1 7 7 C 1.38812 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99968 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00378 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00351 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.17554 * 51.22950 * 10 9 7 12 12 C 1.53036 * 109.32157 * 291.67170 * 10 9 7 13 13 C 1.53964 * 108.83159 * 295.14016 * 12 10 9 14 14 H 1.08999 * 112.99536 * 168.09079 * 13 12 10 15 15 C 1.55431 * 106.41676 * 293.82703 * 13 12 10 16 16 C 1.55446 * 100.23430 * 73.19260 * 15 13 12 17 17 H 1.09003 * 113.04471 * 163.21032 * 16 15 13 18 18 C 1.52991 * 109.32332 * 170.78640 * 10 9 7 19 19 N 1.47785 * 104.11736 * 40.86809 * 16 15 13 20 20 C 1.34779 * 125.85455 * 153.44110 * 19 16 15 21 21 O 1.21517 * 120.00418 * 359.71949 * 20 19 16 22 22 C 1.48175 * 119.99912 * 179.71674 * 20 19 16 23 23 C 1.39304 * 119.72100 * 179.72399 * 22 20 19 24 24 C 1.38589 * 119.05851 * 180.27491 * 23 22 20 25 25 C 1.38634 * 118.48840 * 0.02562 * 24 23 22 26 26 C 1.50697 * 120.32244 * 180.02562 * 25 24 23 27 27 C 1.53005 * 117.49493 * 188.72885 * 26 25 24 28 28 C 1.52998 * 117.49851 * 120.06899 * 26 25 24 29 29 C 1.38562 * 119.34875 * 359.97438 * 25 24 23 30 30 N 1.31512 * 120.90420 * 0.02562 * 29 25 24 31 31 C 1.47077 * 108.28897 * 333.17980 * 19 16 15 32 32 H 0.96999 * 120.00387 * 359.97438 * 1 2 3 33 33 H 0.97007 * 119.99905 * 0.02562 * 9 7 2 34 34 H 1.09000 * 109.57218 * 175.33649 * 12 10 9 35 35 H 1.08998 * 109.68383 * 55.01028 * 12 10 9 36 36 H 1.08996 * 111.23334 * 191.15210 * 15 13 12 37 37 H 1.08998 * 111.22864 * 315.59893 * 15 13 12 38 38 H 1.09002 * 109.52630 * 185.06483 * 18 10 9 39 39 H 1.08998 * 109.53075 * 305.20688 * 18 10 9 40 40 H 1.07999 * 120.47318 * 0.26203 * 23 22 20 41 41 H 1.07998 * 120.75962 * 180.02562 * 24 23 22 42 42 H 1.08998 * 115.55526 * 334.39315 * 26 25 24 43 43 H 1.08998 * 117.49997 * 359.97438 * 27 26 25 44 44 H 1.08998 * 117.49718 * 145.01992 * 27 26 25 45 45 H 1.08997 * 117.50314 * 214.97689 * 28 26 25 46 46 H 1.08998 * 117.50180 * 359.97438 * 28 26 25 47 47 H 1.07999 * 119.54403 * 179.97438 * 29 25 24 48 48 H 1.08999 * 109.97846 * 120.72066 * 31 19 16 49 49 H 1.09002 * 109.98033 * 241.96468 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.7953 -3.6446 0.8021 12 6 2.7731 -3.8287 -1.3426 13 6 1.7170 -3.9537 -2.4560 14 1 2.1414 -3.8721 -3.4566 15 6 0.9630 -5.2882 -2.1984 16 6 0.1137 -4.8908 -0.9586 17 1 -0.7122 -5.5766 -0.7695 18 6 1.0770 -4.8078 0.2306 19 7 -0.3488 -3.5206 -1.2628 20 6 -1.4684 -2.9412 -0.7859 21 8 -2.2012 -3.5587 -0.0387 22 6 -1.8058 -1.5512 -1.1728 23 6 -2.9674 -0.9601 -0.6810 24 6 -3.2726 0.3387 -1.0563 25 6 -2.4052 1.0011 -1.9112 26 6 -2.6965 2.4145 -2.3453 27 6 -1.8141 3.0122 -3.4432 28 6 -1.6637 3.4879 -1.9959 29 6 -1.2673 0.3512 -2.3616 30 7 -1.0018 -0.8819 -1.9895 31 6 0.6253 -2.8953 -2.1701 32 1 -0.4851 0.8400 0.0004 33 1 0.3555 -2.3881 -0.0005 34 1 3.3855 -4.7300 -1.3173 35 1 3.4059 -2.9624 -1.5351 36 1 0.3311 -5.5545 -3.0457 37 1 1.6570 -6.0935 -1.9576 38 1 1.6282 -5.7438 0.3210 39 1 0.5127 -4.6274 1.1456 40 1 -3.6210 -1.5061 -0.0170 41 1 -4.1658 0.8237 -0.6912 42 1 -3.7473 2.7036 -2.3312 43 1 -1.0228 2.3834 -3.8510 44 1 -2.2844 3.6949 -4.1509 45 1 -2.0350 4.4832 -1.7522 46 1 -0.7737 3.1719 -1.4517 47 1 -0.5896 0.8642 -3.0279 48 1 0.1356 -2.6050 -3.0996 49 1 1.0693 -2.0208 -1.6945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095048124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:08 Heat of formation + Delta-G solvation = 110.554042 kcal Electronic energy + Delta-G solvation = -32866.467367 eV Core-core repulsion = 28990.182100 eV Total energy + Delta-G solvation = -3876.285267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.46232 -40.91360 -39.22382 -37.72506 -35.82556 -34.43397 -32.90555 -32.72553 -32.20024 -31.31832 -29.18023 -26.65806 -25.80961 -25.34027 -24.52357 -23.16662 -23.10124 -22.55687 -21.45875 -20.62874 -19.94502 -19.25194 -18.21508 -17.74830 -16.96915 -16.68474 -16.45214 -16.08553 -15.96625 -15.46896 -15.40705 -15.35738 -14.84301 -14.47329 -14.25902 -14.00912 -13.89621 -13.71292 -13.41737 -13.40411 -13.21534 -13.06602 -12.89807 -12.79339 -12.57044 -12.50475 -12.30959 -12.25816 -12.01418 -11.85146 -11.65356 -11.38802 -11.26772 -11.21786 -11.07426 -10.85001 -10.50231 -10.14128 -9.82427 -9.47510 -9.18250 -8.32559 -7.65971 -4.95011 0.07661 0.77717 1.46456 1.49886 1.53094 1.91781 2.21951 2.63541 2.97389 3.29151 3.56484 3.59223 3.70280 3.79878 3.85155 3.93927 4.00723 4.07990 4.15858 4.22563 4.24836 4.26655 4.33826 4.46181 4.51551 4.53900 4.55503 4.73568 4.77469 4.79393 4.83508 4.94801 5.00460 5.08385 5.10498 5.10810 5.17837 5.19420 5.27369 5.33812 5.38332 5.45396 5.49533 5.54039 5.55935 5.69059 5.74669 6.05964 6.30105 6.45414 6.71367 7.14578 7.51373 7.55434 8.28924 8.59093 9.43682 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.005807 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.450591 B = 4820.260155 C = 5962.182187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.038 4.038 3 Si 0.941 3.059 4 H -0.285 1.285 5 H -0.306 1.306 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.060 0.940 9 N -0.734 5.734 10 C 0.161 3.839 11 H 0.020 0.980 12 C -0.117 4.117 13 C -0.095 4.095 14 H 0.110 0.890 15 C -0.108 4.108 16 C 0.119 3.881 17 H 0.087 0.913 18 C -0.126 4.126 19 N -0.575 5.575 20 C 0.574 3.426 21 O -0.599 6.599 22 C 0.104 3.896 23 C -0.129 4.129 24 C -0.086 4.086 25 C -0.091 4.091 26 C -0.112 4.112 27 C -0.163 4.163 28 C -0.177 4.177 29 C 0.099 3.901 30 N -0.384 5.384 31 C 0.084 3.916 32 H 0.246 0.754 33 H 0.386 0.614 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.029 0.971 40 H 0.122 0.878 41 H 0.154 0.846 42 H 0.135 0.865 43 H 0.089 0.911 44 H 0.125 0.875 45 H 0.117 0.883 46 H 0.062 0.938 47 H 0.142 0.858 48 H 0.033 0.967 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 -1.802 -9.303 9.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.234 4.234 3 Si 0.773 3.227 4 H -0.212 1.212 5 H -0.233 1.233 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.078 0.922 9 N -0.385 5.385 10 C 0.053 3.947 11 H 0.038 0.962 12 C -0.156 4.156 13 C -0.113 4.113 14 H 0.128 0.872 15 C -0.145 4.145 16 C 0.016 3.984 17 H 0.105 0.895 18 C -0.165 4.165 19 N -0.305 5.305 20 C 0.364 3.636 21 O -0.482 6.482 22 C -0.034 4.034 23 C -0.150 4.150 24 C -0.112 4.112 25 C -0.094 4.094 26 C -0.130 4.130 27 C -0.200 4.200 28 C -0.214 4.214 29 C -0.061 4.061 30 N -0.095 5.095 31 C -0.037 4.037 32 H 0.056 0.944 33 H 0.229 0.771 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.048 0.952 40 H 0.140 0.860 41 H 0.171 0.829 42 H 0.153 0.847 43 H 0.108 0.892 44 H 0.143 0.857 45 H 0.135 0.865 46 H 0.081 0.919 47 H 0.159 0.841 48 H 0.051 0.949 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.577 -2.424 -9.149 9.595 hybrid contribution -0.401 1.662 1.277 2.134 sum -1.979 -0.762 -7.872 8.152 Atomic orbital electron populations 1.69982 1.04897 1.24484 1.56731 1.24996 0.96076 0.98484 1.03846 0.85658 0.77487 0.82353 0.77171 1.21247 1.23294 1.21771 1.19239 0.90759 0.85427 1.42269 0.92249 1.43808 1.07053 1.00348 1.87284 1.20449 0.92840 0.85846 0.95615 0.96215 1.22127 0.97105 1.01184 0.95210 1.22640 0.95194 0.94201 0.99307 0.87246 1.23025 0.98268 0.97603 0.95623 1.22415 0.95952 0.83277 0.96742 0.89487 1.22129 0.97509 0.99991 0.96857 1.48575 1.21241 1.14869 1.45844 1.18057 0.79998 0.85844 0.79655 1.90629 1.52485 1.65651 1.39465 1.20211 0.92275 0.93192 0.97752 1.21811 0.97370 0.96376 0.99449 1.21264 1.00248 0.93057 0.96632 1.20318 0.95876 0.95682 0.97478 1.20998 0.98196 0.89145 1.04681 1.23141 1.02135 1.03231 0.91472 1.22992 1.00092 0.99041 0.99289 1.22341 0.94773 0.91074 0.97925 1.67478 1.24188 1.08910 1.08885 1.23253 0.88433 1.00956 0.91101 0.94369 0.77122 0.89859 0.93403 0.90301 0.87032 0.87223 0.95163 0.85986 0.82876 0.84700 0.89243 0.85659 0.86454 0.91922 0.84108 0.94911 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.48 7.56 21.65 0.16 -48.31 16 2 C -0.04 -2.01 5.38 84.86 0.46 -1.55 16 3 Si 0.94 44.31 29.55 68.60 2.03 46.33 16 4 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.31 -14.85 7.11 99.48 0.71 -14.14 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.25 -12.84 7.91 84.03 0.66 -12.17 16 8 H 0.06 3.11 7.73 -2.91 -0.02 3.09 16 9 N -0.73 -35.55 2.79 -322.89 -0.90 -36.46 16 10 C 0.16 6.30 3.13 45.00 0.14 6.44 16 11 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 12 C -0.12 -3.71 5.19 30.93 0.16 -3.55 16 13 C -0.09 -2.84 4.33 -9.05 -0.04 -2.88 16 14 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 15 C -0.11 -2.72 6.20 32.27 0.20 -2.52 16 16 C 0.12 4.05 3.95 45.68 0.18 4.23 16 17 H 0.09 2.98 8.01 -2.39 -0.02 2.96 16 18 C -0.13 -4.37 5.40 30.68 0.17 -4.20 16 19 N -0.57 -23.90 1.73 -787.86 -1.36 -25.27 16 20 C 0.57 27.38 6.13 86.88 0.53 27.91 16 21 O -0.60 -30.88 16.57 -3.77 -0.06 -30.94 16 22 C 0.10 4.75 4.65 41.91 0.19 4.94 16 23 C -0.13 -5.35 9.63 22.61 0.22 -5.14 16 24 C -0.09 -2.98 9.88 22.45 0.22 -2.76 16 25 C -0.09 -3.08 5.17 -19.69 -0.10 -3.18 16 26 C -0.11 -2.87 6.06 -11.54 -0.07 -2.94 16 27 C -0.16 -3.69 9.87 30.62 0.30 -3.39 16 28 C -0.18 -4.65 10.17 30.62 0.31 -4.33 16 29 C 0.10 3.84 8.60 84.82 0.73 4.57 16 30 N -0.38 -16.83 5.18 -184.91 -0.96 -17.79 16 31 C 0.08 3.34 3.91 86.85 0.34 3.68 16 32 H 0.25 13.12 7.16 -92.71 -0.66 12.45 16 33 H 0.39 19.84 3.00 -92.70 -0.28 19.56 16 34 H 0.08 2.06 7.97 -2.39 -0.02 2.04 16 35 H 0.05 1.70 7.65 -2.39 -0.02 1.69 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.11 2.12 7.75 -2.39 -0.02 2.10 16 38 H 0.11 2.84 8.00 -2.39 -0.02 2.82 16 39 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 40 H 0.12 5.03 7.64 -2.91 -0.02 5.00 16 41 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 42 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.09 2.21 6.20 -2.39 -0.01 2.20 16 44 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.14 5.17 6.03 -2.91 -0.02 5.15 16 48 H 0.03 1.32 7.43 -2.39 -0.02 1.31 16 49 H 0.15 6.86 3.26 -14.99 -0.05 6.81 16 Total: -1.00 -65.93 361.29 4.28 -61.66 By element: Atomic # 1 Polarization: 46.86 SS G_CDS: 0.76 Total: 47.62 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 4.61 Total: 3.16 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -3.06 Total: -127.82 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.06 Total: -30.94 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -65.93 4.28 -61.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095048124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.210 kcal (2) G-P(sol) polarization free energy of solvation -65.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds