Wall clock time and date at job start Wed Apr 1 2020 00:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86808 * 120.00078 * 2 1 4 4 H 1.48495 * 109.46958 * 274.98060 * 3 2 1 5 5 H 1.48504 * 109.46761 * 34.97744 * 3 2 1 6 6 H 1.48501 * 109.47220 * 154.97811 * 3 2 1 7 7 C 1.38807 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00188 * 188.95608 * 7 2 1 9 9 N 1.36942 * 120.00055 * 8.95151 * 7 2 1 10 10 C 1.47217 * 126.69900 * 14.01196 * 9 7 2 11 11 C 1.53799 * 106.35655 * 148.76133 * 10 9 7 12 12 H 1.09001 * 111.63370 * 257.33369 * 11 10 9 13 13 C 1.54177 * 109.12616 * 132.67699 * 11 10 9 14 14 C 1.54857 * 104.29556 * 223.08423 * 13 11 10 15 15 C 1.54075 * 103.10074 * 37.53359 * 14 13 11 16 16 C 1.54184 * 104.66949 * 322.88423 * 15 14 13 17 17 N 1.46494 * 111.61664 * 260.48879 * 16 15 14 18 18 C 1.34781 * 119.99789 * 299.01737 * 17 16 15 19 19 O 1.21277 * 120.00252 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.99625 * 180.02562 * 18 17 16 21 21 H 1.09006 * 110.73153 * 61.95564 * 20 18 17 22 22 C 1.54370 * 110.99184 * 185.47966 * 20 18 17 23 23 C 1.51217 * 105.11834 * 144.59128 * 22 20 18 24 24 C 1.38747 * 130.68643 * 162.84595 * 23 22 20 25 25 C 1.38584 * 118.55651 * 180.02562 * 24 23 22 26 26 C 1.38222 * 118.98482 * 359.96028 * 25 24 23 27 27 N 1.31682 * 120.80902 * 0.05759 * 26 25 24 28 28 C 1.32298 * 122.03122 * 359.95430 * 27 26 25 29 29 C 1.51476 * 130.14998 * 180.02562 * 28 27 26 30 30 C 1.47219 * 126.70132 * 194.00861 * 9 7 2 31 31 H 0.97005 * 120.00213 * 0.02562 * 1 2 3 32 32 H 1.09006 * 110.07719 * 29.54337 * 10 9 7 33 33 H 1.08997 * 110.07946 * 267.98689 * 10 9 7 34 34 H 1.09001 * 110.46943 * 341.78657 * 13 11 10 35 35 H 1.08995 * 110.46982 * 104.38247 * 13 11 10 36 36 H 1.09001 * 110.75697 * 156.45124 * 14 13 11 37 37 H 1.09000 * 110.76044 * 279.82350 * 14 13 11 38 38 H 1.09004 * 111.22851 * 203.58862 * 15 14 13 39 39 H 1.08999 * 109.34753 * 81.24560 * 15 14 13 40 40 H 0.96999 * 120.00309 * 119.02295 * 17 16 15 41 41 H 1.08996 * 110.31205 * 263.50435 * 22 20 18 42 42 H 1.08999 * 110.31015 * 25.67630 * 22 20 18 43 43 H 1.07998 * 120.72201 * 0.04839 * 24 23 22 44 44 H 1.07996 * 120.50513 * 180.02562 * 25 24 23 45 45 H 1.08008 * 119.59248 * 180.02562 * 26 25 24 46 46 H 1.08998 * 110.29712 * 316.11842 * 29 28 27 47 47 H 1.09007 * 110.29226 * 78.14972 * 29 28 27 48 48 H 1.09000 * 110.07668 * 92.01707 * 30 9 7 49 49 H 1.09000 * 110.08035 * 330.46826 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5041 2.6200 0.8026 6 1 3.5964 1.4121 0.5922 7 6 2.0102 -1.2021 0.0005 8 1 3.0804 -1.2077 0.1462 9 7 1.3380 -2.3809 -0.1835 10 6 -0.0411 -2.5401 -0.6734 11 6 -0.0787 -3.8757 -1.4351 12 1 -0.0613 -3.7235 -2.5142 13 6 -1.3107 -4.6827 -0.9792 14 6 -0.7811 -6.1285 -0.8140 15 6 0.6312 -5.9190 -0.2348 16 6 1.1629 -4.6597 -0.9479 17 7 2.0556 -5.0041 -2.0573 18 6 3.1914 -5.6899 -1.8202 19 8 3.4741 -6.0224 -0.6887 20 6 4.1099 -6.0437 -2.9613 21 1 4.4906 -5.1433 -3.4436 22 6 5.2703 -6.9405 -2.4795 23 6 5.5355 -7.8916 -3.6248 24 6 6.6339 -8.6940 -3.8984 25 6 6.6116 -9.4812 -5.0388 26 6 5.5002 -9.4398 -5.8595 27 7 4.4754 -8.6657 -5.5687 28 6 4.4584 -7.8998 -4.4902 29 6 3.3921 -6.9512 -3.9826 30 6 1.8535 -3.7365 0.0699 31 1 -0.4851 0.8401 -0.0004 32 1 -0.2971 -1.7197 -1.3439 33 1 -0.7355 -2.5685 0.1663 34 1 -1.6847 -4.3029 -0.0284 35 1 -2.0918 -4.6474 -1.7385 36 1 -1.4084 -6.6933 -0.1243 37 1 -0.7186 -6.6298 -1.7799 38 1 1.2739 -6.7746 -0.4425 39 1 0.5592 -5.7471 0.8392 40 1 1.8293 -4.7385 -2.9623 41 1 6.1551 -6.3374 -2.2758 42 1 4.9756 -7.4943 -1.5881 43 1 7.4874 -8.7052 -3.2368 44 1 7.4493 -10.1179 -5.2818 45 1 5.4723 -10.0496 -6.7506 46 1 2.9942 -6.3552 -4.8039 47 1 2.5905 -7.5082 -3.4974 48 1 1.6060 -4.0472 1.0850 49 1 2.9334 -3.7596 -0.0762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099137677.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:29 Heat of formation + Delta-G solvation = 21.015083 kcal Electronic energy + Delta-G solvation = -30234.996712 eV Core-core repulsion = 26354.828744 eV Total energy + Delta-G solvation = -3880.167968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.15396 -40.14146 -38.36942 -35.97559 -34.51988 -33.49660 -32.85826 -31.45685 -30.09241 -29.29415 -28.04950 -27.64922 -24.86948 -24.79748 -23.94371 -22.09108 -22.05698 -20.88819 -20.29704 -19.23019 -18.83629 -17.41282 -16.85825 -16.74277 -16.49566 -15.77665 -15.42748 -14.96612 -14.84850 -14.70984 -14.23874 -14.06525 -13.62205 -13.57184 -13.38308 -13.13378 -13.08907 -12.70753 -12.65817 -12.45166 -11.97429 -11.69821 -11.63226 -11.50172 -11.41143 -11.22220 -10.91014 -10.81591 -10.71651 -10.59317 -10.26562 -10.25431 -9.98580 -9.97365 -9.73827 -9.69242 -9.55480 -9.43397 -8.94539 -8.71642 -8.51766 -6.79813 -5.76560 -3.09590 0.83422 1.02765 2.79807 3.33653 3.38833 3.44680 3.46608 3.50677 3.68642 4.22234 4.42954 4.48399 4.62627 4.67533 4.73029 4.85493 4.90518 4.99630 5.01544 5.18918 5.24320 5.32350 5.47329 5.47982 5.53827 5.54247 5.68742 5.74607 5.77377 5.81459 5.85054 5.86247 5.95264 6.00129 6.00925 6.07528 6.13227 6.25131 6.40226 6.43893 6.45032 6.55149 6.67562 6.73643 6.86419 7.15181 7.42883 7.56064 7.74058 7.74974 7.81417 8.26078 8.47578 9.17882 9.79491 10.51972 11.37216 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014230 B = 0.002914 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.260076 B = 9605.326004 C =10764.136131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.225 4.225 8 H 0.074 0.926 9 N -0.596 5.596 10 C 0.172 3.828 11 C -0.116 4.116 12 H 0.074 0.926 13 C -0.113 4.113 14 C -0.124 4.124 15 C -0.117 4.117 16 C 0.163 3.837 17 N -0.702 5.702 18 C 0.524 3.476 19 O -0.533 6.533 20 C -0.110 4.110 21 H 0.111 0.889 22 C -0.063 4.063 23 C -0.142 4.142 24 C -0.065 4.065 25 C -0.175 4.175 26 C 0.098 3.902 27 N -0.479 5.479 28 C 0.120 3.880 29 C -0.060 4.060 30 C 0.137 3.863 31 H 0.253 0.747 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.397 0.603 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.157 0.843 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.026 0.974 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.837 -18.277 -10.307 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.092 0.908 9 N -0.320 5.320 10 C 0.046 3.954 11 C -0.137 4.137 12 H 0.092 0.908 13 C -0.151 4.151 14 C -0.161 4.161 15 C -0.155 4.155 16 C 0.076 3.924 17 N -0.351 5.351 18 C 0.309 3.691 19 O -0.409 6.409 20 C -0.132 4.132 21 H 0.129 0.871 22 C -0.101 4.101 23 C -0.144 4.144 24 C -0.091 4.091 25 C -0.195 4.195 26 C -0.059 4.059 27 N -0.188 5.188 28 C -0.017 4.017 29 C -0.098 4.098 30 C 0.010 3.990 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.232 0.768 41 H 0.103 0.897 42 H 0.121 0.879 43 H 0.151 0.849 44 H 0.154 0.846 45 H 0.174 0.826 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.043 0.957 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.281 -18.236 -10.004 21.728 hybrid contribution 1.190 0.984 -0.001 1.544 sum 7.470 -17.252 -10.005 21.296 Atomic orbital electron populations 1.69929 1.04943 1.25189 1.56305 1.24845 0.95618 0.97794 1.02024 0.86133 0.78801 0.83578 0.77473 1.21647 1.21723 1.20566 1.19020 0.90828 0.82550 1.42962 0.90790 1.44531 1.11935 1.00032 1.75523 1.21327 0.86839 0.91624 0.95639 1.23016 0.92322 0.98239 1.00104 0.90755 1.22435 0.96826 0.94263 1.01559 1.22403 0.96400 0.97077 1.00268 1.22483 0.95530 0.97360 1.00171 1.21726 0.89467 0.94088 0.87137 1.45999 1.21988 1.56264 1.10890 1.20019 0.81420 0.77992 0.89694 1.90697 1.73449 1.53743 1.23050 1.22017 0.95906 0.99958 0.95348 0.87068 1.20843 0.97816 0.95262 0.96156 1.21531 0.95461 0.98979 0.98421 1.21092 0.97426 0.94031 0.96545 1.22070 1.00317 1.00980 0.96088 1.22619 0.88747 0.95587 0.98943 1.66841 1.28216 1.05782 1.17923 1.21757 0.95050 0.94793 0.90139 1.20913 0.95797 0.95107 0.97980 1.21625 0.97189 0.85829 0.94385 0.93710 0.90738 0.95489 0.90893 0.92033 0.91944 0.92294 0.91241 0.90915 0.76844 0.89731 0.87868 0.84880 0.84592 0.82627 0.88848 0.88708 0.95676 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.84 55.49 0.60 -26.01 16 2 C -0.01 -0.17 5.39 -17.43 -0.09 -0.26 16 3 Si 0.91 22.01 29.56 -169.99 -5.03 16.99 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.29 10.28 -15.06 -0.15 -6.45 16 8 H 0.07 2.04 7.84 -52.48 -0.41 1.63 16 9 N -0.60 -15.14 3.39 -171.10 -0.58 -15.72 16 10 C 0.17 3.98 5.17 -3.23 -0.02 3.96 16 11 C -0.12 -2.03 3.67 -88.69 -0.33 -2.36 16 12 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 13 C -0.11 -1.68 6.38 -25.14 -0.16 -1.84 16 14 C -0.12 -1.65 6.86 -25.19 -0.17 -1.82 16 15 C -0.12 -1.82 5.60 -25.55 -0.14 -1.97 16 16 C 0.16 2.80 0.93 -129.89 -0.12 2.67 16 17 N -0.70 -10.14 5.17 -45.83 -0.24 -10.38 16 18 C 0.52 7.52 6.05 -10.99 -0.07 7.46 16 19 O -0.53 -9.40 13.16 5.56 0.07 -9.33 16 20 C -0.11 -1.21 3.46 -90.36 -0.31 -1.52 16 21 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 22 C -0.06 -0.68 6.07 -26.91 -0.16 -0.84 16 23 C -0.14 -1.50 6.16 -104.21 -0.64 -2.14 16 24 C -0.07 -0.58 10.17 -39.27 -0.40 -0.98 16 25 C -0.17 -1.37 10.12 -39.46 -0.40 -1.77 16 26 C 0.10 0.89 11.18 -17.62 -0.20 0.70 16 27 N -0.48 -5.62 10.35 -9.19 -0.10 -5.71 16 28 C 0.12 1.37 7.32 -82.03 -0.60 0.77 16 29 C -0.06 -0.60 6.26 -26.80 -0.17 -0.77 16 30 C 0.14 3.00 6.04 -3.24 -0.02 2.98 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.07 1.93 6.77 -51.93 -0.35 1.58 16 33 H 0.03 0.68 7.12 -51.93 -0.37 0.31 16 34 H 0.07 1.17 7.17 -51.93 -0.37 0.80 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.09 6.66 -51.93 -0.35 0.75 16 39 H 0.07 1.21 7.23 -51.93 -0.38 0.83 16 40 H 0.40 4.84 8.27 -40.82 -0.34 4.50 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 1.25 7.09 -51.93 -0.37 0.88 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 44 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 45 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.97 7.89 -51.93 -0.41 0.56 16 48 H 0.03 0.58 7.19 -51.93 -0.37 0.21 16 49 H 0.05 1.10 6.84 -51.93 -0.36 0.74 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -32.90 380.00 -11.10 -44.00 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.41 Total: 4.61 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -4.16 Total: -4.18 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.31 Total: -57.82 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.07 Total: -9.33 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.90 -11.10 -44.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099137677.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.016 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds