Wall clock time and date at job start Wed Apr 1 2020 00:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47150 * 240.00076 * 3 2 1 5 5 H 1.48494 * 109.47443 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46665 * 120.00607 * 3 2 1 7 7 C 1.38810 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00278 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99963 * 359.97438 * 7 2 1 10 10 C 1.47207 * 126.70277 * 359.97438 * 9 7 2 11 11 C 1.53777 * 106.38033 * 211.30647 * 10 9 7 12 12 H 1.09004 * 112.38203 * 219.31319 * 11 10 9 13 13 C 1.54320 * 109.06652 * 94.88687 * 11 10 9 14 14 C 1.55054 * 103.93703 * 222.02722 * 13 11 10 15 15 C 1.55062 * 102.10932 * 40.06097 * 14 13 11 16 16 C 1.54327 * 103.93358 * 319.94183 * 15 14 13 17 17 N 1.46503 * 111.69146 * 262.78796 * 16 15 14 18 18 C 1.34775 * 119.99843 * 298.99320 * 17 16 15 19 19 O 1.21284 * 120.00240 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.99945 * 180.02562 * 18 17 16 21 21 H 1.09003 * 110.72498 * 300.69967 * 20 18 17 22 22 C 1.54364 * 110.82473 * 177.29062 * 20 18 17 23 23 C 1.51225 * 105.11776 * 268.06564 * 22 20 18 24 24 C 1.38746 * 130.69308 * 162.86598 * 23 22 20 25 25 C 1.38573 * 118.55853 * 180.02562 * 24 23 22 26 26 C 1.38230 * 118.98991 * 359.97438 * 25 24 23 27 27 N 1.31690 * 120.80102 * 359.97438 * 26 25 24 28 28 C 1.32297 * 122.03282 * 359.97438 * 27 26 25 29 29 C 1.51999 * 130.09659 * 180.02562 * 28 27 26 30 30 C 1.47213 * 126.69663 * 180.02562 * 9 7 2 31 31 H 0.96996 * 120.00120 * 359.97438 * 1 2 3 32 32 H 1.08995 * 110.07190 * 92.07466 * 10 9 7 33 33 H 1.09004 * 110.07670 * 330.53687 * 10 9 7 34 34 H 1.08996 * 110.53096 * 340.64453 * 13 11 10 35 35 H 1.09006 * 110.53191 * 103.41966 * 13 11 10 36 36 H 1.08995 * 110.90489 * 281.86172 * 14 13 11 37 37 H 1.08995 * 110.90307 * 158.26077 * 14 13 11 38 38 H 1.08998 * 110.53652 * 201.33248 * 15 14 13 39 39 H 1.08998 * 110.53117 * 78.55114 * 15 14 13 40 40 H 0.96998 * 119.99618 * 118.98646 * 17 16 15 41 41 H 1.08998 * 110.31630 * 26.97436 * 22 20 18 42 42 H 1.09005 * 110.31303 * 149.15375 * 22 20 18 43 43 H 1.07998 * 120.71768 * 0.03188 * 24 23 22 44 44 H 1.07999 * 120.50811 * 180.02562 * 25 24 23 45 45 H 1.08000 * 119.60094 * 180.02562 * 26 25 24 46 46 H 1.09002 * 110.36225 * 78.35459 * 29 28 27 47 47 H 1.09002 * 110.48223 * 316.05580 * 29 28 27 48 48 H 1.08994 * 110.08079 * 29.47180 * 30 9 7 49 49 H 1.09000 * 110.07477 * 267.92307 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1365 -2.5599 0.0005 11 6 -0.4195 -3.8628 0.7668 12 1 -1.2227 -4.4444 0.3142 13 6 -0.7213 -3.5246 2.2419 14 6 0.0432 -4.6132 3.0386 15 6 1.3673 -4.7308 2.2402 16 6 0.9218 -4.6373 0.7656 17 7 0.7838 -5.9625 0.1566 18 6 1.8523 -6.7795 0.0714 19 8 2.9281 -6.4175 0.4986 20 6 1.7105 -8.1425 -0.5556 21 1 0.9720 -8.7388 -0.0196 22 6 3.0719 -8.8687 -0.6038 23 6 3.6596 -8.5157 -1.9518 24 6 4.9609 -8.6093 -2.4238 25 6 5.2246 -8.2082 -3.7237 26 6 4.1860 -7.7313 -4.5014 27 7 2.9623 -7.6573 -4.0204 28 6 2.6700 -8.0312 -2.7855 29 6 1.3398 -8.0257 -2.0499 30 6 1.9079 -3.7402 -0.0005 31 1 -0.4850 0.8400 0.0004 32 1 -0.5045 -2.6399 -1.0223 33 1 -0.6118 -1.7185 0.5048 34 1 -0.3447 -2.5327 2.4915 35 1 -1.7918 -3.5888 2.4375 36 1 -0.5018 -5.5571 3.0289 37 1 0.2331 -4.2857 4.0606 38 1 1.8471 -5.6900 2.4345 39 1 2.0384 -3.9089 2.4897 40 1 -0.0766 -6.2519 -0.1853 41 1 3.7198 -8.5117 0.1966 42 1 2.9289 -9.9464 -0.5238 43 1 5.7512 -8.9868 -1.7918 44 1 6.2261 -8.2679 -4.1235 45 1 4.3803 -7.4164 -5.5160 46 1 0.7321 -8.8763 -2.3587 47 1 0.8065 -7.0929 -2.2331 48 1 2.8744 -3.7313 0.5031 49 1 2.0218 -4.0985 -1.0236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099137678.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:34 Heat of formation + Delta-G solvation = 26.374382 kcal Electronic energy + Delta-G solvation = -30788.393047 eV Core-core repulsion = 26908.457476 eV Total energy + Delta-G solvation = -3879.935571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.10319 -39.98321 -38.31298 -35.84646 -34.39958 -33.42866 -32.67565 -31.41147 -29.91886 -29.24671 -27.98131 -27.59214 -24.78053 -24.60005 -23.85038 -22.12782 -21.95883 -20.66211 -20.50548 -19.07179 -18.84248 -17.40290 -16.89431 -16.68283 -16.22508 -15.73289 -15.26149 -14.87653 -14.72272 -14.61120 -13.99948 -13.83010 -13.49709 -13.46838 -13.41460 -13.14776 -12.96362 -12.95497 -12.61036 -12.18638 -11.99396 -11.77142 -11.70890 -11.47329 -11.24221 -11.01090 -10.87870 -10.62589 -10.53236 -10.29093 -10.19557 -10.04749 -9.93863 -9.88746 -9.80286 -9.65904 -9.42532 -9.31680 -8.81086 -8.71694 -8.56340 -6.82671 -5.61667 -3.05781 1.01349 1.21636 2.81068 3.33420 3.43019 3.46831 3.48598 3.66426 3.82356 4.26277 4.48170 4.50889 4.71042 4.74313 4.83087 4.95573 5.03873 5.14647 5.15996 5.23795 5.35277 5.39506 5.48700 5.52078 5.61402 5.65363 5.68703 5.74239 5.84569 5.88361 5.91309 6.04189 6.04453 6.14026 6.14822 6.15334 6.27446 6.37466 6.44300 6.59325 6.61125 6.65752 6.82760 6.87072 6.98575 7.17244 7.45369 7.64833 7.78775 7.87346 7.92757 8.41584 8.50524 9.24356 9.84592 10.51958 11.39662 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012028 B = 0.003561 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.304110 B = 7861.118997 C = 9259.501842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.215 4.215 8 H 0.077 0.923 9 N -0.592 5.592 10 C 0.140 3.860 11 C -0.114 4.114 12 H 0.069 0.931 13 C -0.109 4.109 14 C -0.125 4.125 15 C -0.110 4.110 16 C 0.158 3.842 17 N -0.708 5.708 18 C 0.518 3.482 19 O -0.528 6.528 20 C -0.113 4.113 21 H 0.115 0.885 22 C -0.065 4.065 23 C -0.137 4.137 24 C -0.063 4.063 25 C -0.174 4.174 26 C 0.100 3.900 27 N -0.477 5.477 28 C 0.117 3.883 29 C -0.061 4.061 30 C 0.143 3.857 31 H 0.253 0.747 32 H 0.003 0.997 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.396 0.604 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.156 0.844 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.049 0.951 49 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.402 -20.907 -1.030 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.343 4.343 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.014 3.986 11 C -0.134 4.134 12 H 0.087 0.913 13 C -0.146 4.146 14 C -0.162 4.162 15 C -0.149 4.149 16 C 0.071 3.929 17 N -0.358 5.358 18 C 0.303 3.697 19 O -0.404 6.404 20 C -0.134 4.134 21 H 0.133 0.867 22 C -0.103 4.103 23 C -0.139 4.139 24 C -0.089 4.089 25 C -0.194 4.194 26 C -0.057 4.057 27 N -0.186 5.186 28 C -0.021 4.021 29 C -0.099 4.099 30 C 0.015 3.985 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.147 0.853 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.230 0.770 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.174 0.826 46 H 0.117 0.883 47 H 0.110 0.890 48 H 0.067 0.933 49 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 1.500 -20.033 -1.268 20.129 hybrid contribution 0.827 0.316 0.063 0.888 sum 2.328 -19.717 -1.205 19.891 Atomic orbital electron populations 1.69576 1.04834 1.24740 1.58041 1.24737 0.95698 0.97574 1.02620 0.86134 0.78402 0.82976 0.77923 1.21270 1.21543 1.21165 1.19054 0.90463 0.82192 1.42584 0.90512 1.44431 1.01755 0.99543 1.85869 1.22020 0.85710 0.94580 0.96298 1.23037 0.94048 0.98816 0.97519 0.91261 1.22449 0.98789 0.99622 0.93766 1.22599 0.96617 0.98474 0.98536 1.22638 0.97056 1.02005 0.93197 1.21816 0.97299 0.80747 0.92996 1.46019 1.11714 1.16555 1.61513 1.20190 0.84395 0.86049 0.79049 1.90698 1.26516 1.75412 1.47757 1.22068 0.99712 0.95370 0.96287 0.86677 1.20866 0.94827 0.99808 0.94768 1.21382 0.94457 1.00298 0.97753 1.21039 0.95523 0.96977 0.95381 1.22058 1.00890 1.01450 0.95008 1.22612 0.87409 0.95825 0.99903 1.66820 1.22554 1.14928 1.14278 1.21854 0.96168 0.94374 0.89673 1.21061 0.93417 1.04537 0.90876 1.21479 0.95015 0.85939 0.96049 0.93654 0.97932 0.85318 0.90132 0.92576 0.92535 0.92207 0.91841 0.90475 0.77032 0.88304 0.89347 0.85038 0.84635 0.82647 0.88254 0.88979 0.93254 0.97071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 10.08 55.49 0.56 -26.02 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.21 -6.10 10.34 -15.06 -0.16 -6.26 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.59 -15.48 3.39 -171.15 -0.58 -16.06 16 10 C 0.14 3.35 5.56 -3.25 -0.02 3.34 16 11 C -0.11 -2.10 3.68 -88.53 -0.33 -2.43 16 12 H 0.07 1.10 7.71 -51.93 -0.40 0.70 16 13 C -0.11 -1.87 6.23 -24.95 -0.16 -2.03 16 14 C -0.12 -1.90 6.92 -24.56 -0.17 -2.07 16 15 C -0.11 -1.95 5.51 -24.95 -0.14 -2.09 16 16 C 0.16 2.88 0.92 -129.73 -0.12 2.76 16 17 N -0.71 -10.25 4.99 -45.68 -0.23 -10.47 16 18 C 0.52 7.54 6.43 -10.99 -0.07 7.47 16 19 O -0.53 -9.75 13.50 5.55 0.07 -9.67 16 20 C -0.11 -1.14 3.45 -90.32 -0.31 -1.45 16 21 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 22 C -0.07 -0.66 6.10 -26.91 -0.16 -0.83 16 23 C -0.14 -1.68 6.16 -104.20 -0.64 -2.32 16 24 C -0.06 -0.71 10.17 -39.27 -0.40 -1.10 16 25 C -0.17 -1.83 10.12 -39.46 -0.40 -2.23 16 26 C 0.10 1.20 11.18 -17.62 -0.20 1.00 16 27 N -0.48 -6.94 10.35 -9.02 -0.09 -7.03 16 28 C 0.12 1.57 7.33 -81.77 -0.60 0.97 16 29 C -0.06 -0.64 6.34 -26.50 -0.17 -0.81 16 30 C 0.14 3.29 5.31 -3.26 -0.02 3.27 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.13 3.43 4.88 -51.93 -0.25 3.18 16 34 H 0.08 1.65 7.56 -51.93 -0.39 1.25 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.10 6.65 -51.93 -0.35 0.75 16 39 H 0.08 1.55 7.56 -51.93 -0.39 1.16 16 40 H 0.40 4.53 8.24 -40.82 -0.34 4.19 16 41 H 0.10 1.16 6.99 -51.93 -0.36 0.80 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.09 1.06 7.67 -51.93 -0.40 0.66 16 48 H 0.05 1.20 7.55 -51.93 -0.39 0.81 16 49 H 0.01 0.28 8.08 -51.93 -0.42 -0.14 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -34.03 380.62 -11.17 -45.20 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.47 Total: 6.21 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -4.15 Total: -5.22 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.34 Total: -59.59 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.67 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.03 -11.17 -45.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099137678.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.573 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds