Wall clock time and date at job start Wed Apr 1 2020 01:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86805 * 119.99695 * 2 1 4 4 H 1.48493 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46859 * 299.99887 * 3 2 1 6 6 H 1.48502 * 109.47158 * 59.99778 * 3 2 1 7 7 C 1.38938 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00100 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00547 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00334 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00103 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99870 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47202 * 186.85223 * 12 10 9 14 14 C 1.46906 * 110.99682 * 294.39477 * 13 12 10 15 15 C 1.53238 * 109.33714 * 187.25260 * 14 13 12 16 16 N 1.47078 * 108.52359 * 306.17138 * 15 14 13 17 17 C 1.34783 * 120.88188 * 231.19173 * 16 15 14 18 18 O 1.21285 * 119.99495 * 4.32577 * 17 16 15 19 19 C 1.50695 * 120.00168 * 184.33266 * 17 16 15 20 20 H 1.09003 * 109.47174 * 321.76151 * 19 17 16 21 21 C 1.52995 * 109.47215 * 81.75930 * 19 17 16 22 22 C 1.53002 * 109.47152 * 180.02562 * 21 19 17 23 23 C 1.53000 * 109.47112 * 300.00535 * 22 21 19 24 24 C 1.52995 * 109.47549 * 59.99708 * 23 22 21 25 25 H 1.09007 * 109.46926 * 59.99746 * 24 23 22 26 26 F 1.39902 * 109.47415 * 180.02562 * 24 23 22 27 27 C 1.53000 * 109.47107 * 201.76500 * 19 17 16 28 28 C 1.47079 * 118.24058 * 51.45496 * 16 15 14 29 29 C 1.46902 * 111.00114 * 58.69361 * 13 12 10 30 30 H 0.96999 * 120.00094 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99711 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47147 * 66.84837 * 12 10 9 33 33 H 1.09005 * 109.47110 * 306.85135 * 12 10 9 34 34 H 1.09000 * 109.49099 * 67.29320 * 14 13 12 35 35 H 1.08998 * 109.49430 * 307.20875 * 14 13 12 36 36 H 1.09004 * 109.62652 * 186.45652 * 15 14 13 37 37 H 1.08999 * 109.79080 * 65.97343 * 15 14 13 38 38 H 1.08996 * 109.47665 * 300.00010 * 21 19 17 39 39 H 1.08995 * 109.47285 * 60.00754 * 21 19 17 40 40 H 1.09003 * 109.47232 * 60.00224 * 22 21 19 41 41 H 1.08996 * 109.47414 * 179.97438 * 22 21 19 42 42 H 1.09003 * 109.47179 * 179.97438 * 23 22 21 43 43 H 1.09004 * 109.46961 * 299.99169 * 23 22 21 44 44 H 1.09000 * 109.46566 * 299.99408 * 27 19 17 45 45 H 1.08996 * 109.47485 * 59.99351 * 27 19 17 46 46 H 1.09002 * 109.62536 * 68.25275 * 28 16 15 47 47 H 1.08992 * 109.63200 * 188.83277 * 28 16 15 48 48 H 1.08997 * 109.49285 * 292.71126 * 29 13 12 49 49 H 1.09000 * 109.48983 * 52.78607 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2032 0.0005 8 1 3.0890 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2440 -4.8629 0.0011 13 7 2.1900 -5.9745 0.1662 14 6 3.0870 -6.0788 -0.9925 15 6 3.9320 -7.3510 -0.8672 16 7 4.6045 -7.3384 0.4408 17 6 5.9339 -7.5387 0.5371 18 8 6.6040 -7.6544 -0.4672 19 6 6.5875 -7.6190 1.8925 20 1 6.1234 -6.8958 2.5632 21 6 6.4110 -9.0283 2.4612 22 6 7.0741 -9.1096 3.8377 23 6 8.5658 -8.7965 3.7044 24 6 8.7423 -7.3871 3.1358 25 1 8.2777 -6.6640 3.8062 26 9 10.1063 -7.1010 3.0134 27 6 8.0792 -7.3060 1.7587 28 6 3.7870 -7.1072 1.6414 29 6 2.9487 -5.8387 1.4169 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3907 0.0005 32 1 0.7120 -4.9758 -0.9435 33 1 0.5288 -4.8692 0.8238 34 1 3.7425 -5.2085 -1.0245 35 1 2.4960 -6.1234 -1.9072 36 1 4.6775 -7.3752 -1.6621 37 1 3.2902 -8.2290 -0.9404 38 1 5.3483 -9.2512 2.5566 39 1 6.8752 -9.7514 1.7907 40 1 6.6095 -8.3865 4.5081 41 1 6.9480 -10.1135 4.2430 42 1 9.0381 -8.8539 4.6851 43 1 9.0304 -9.5196 3.0341 44 1 8.5433 -8.0292 1.0881 45 1 8.2050 -6.3020 1.3535 46 1 3.1289 -7.9604 1.8060 47 1 4.4366 -6.9702 2.5058 48 1 3.6061 -4.9718 1.3512 49 1 2.2572 -5.7091 2.2494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112835721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:52 Heat of formation + Delta-G solvation = -125.557840 kcal Electronic energy + Delta-G solvation = -30973.701325 eV Core-core repulsion = 26656.408254 eV Total energy + Delta-G solvation = -4317.293071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.80246 -40.58233 -39.15819 -37.70292 -36.85401 -34.54389 -33.68950 -31.82290 -31.38635 -30.81264 -30.35480 -28.70503 -25.81810 -24.42067 -23.80296 -23.11876 -22.87397 -21.17113 -20.31429 -19.45988 -18.81030 -17.95536 -17.32424 -16.52444 -16.10855 -16.02625 -15.65885 -15.25175 -15.19377 -14.94540 -14.85306 -14.66148 -14.50730 -14.13012 -14.02898 -13.82187 -13.56643 -13.48497 -13.13405 -12.94970 -12.66989 -12.30743 -11.94289 -11.86682 -11.64283 -11.58735 -11.46340 -11.43405 -11.25694 -11.08223 -11.03291 -10.86007 -10.82736 -10.68571 -10.52710 -10.42205 -10.32587 -9.60050 -9.56231 -9.33685 -8.63373 -8.07327 -7.52538 -6.52306 -3.93834 2.61585 2.95077 3.08254 3.20621 3.27509 3.74317 4.07952 4.09923 4.14439 4.21566 4.26869 4.51274 4.63596 4.67998 4.82840 4.88219 4.90737 4.93688 5.08853 5.11067 5.17025 5.20421 5.25607 5.30954 5.44073 5.52057 5.57952 5.59709 5.62585 5.71516 5.74022 5.77992 5.79287 5.89558 5.90865 5.94246 6.00377 6.07015 6.13912 6.42730 6.53213 6.61892 7.14542 7.28589 7.45005 7.46331 7.94053 8.18506 8.48066 9.06243 9.41591 9.91744 10.64174 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013340 B = 0.002652 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.384628 B =10554.961082 C =11748.149152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.555 5.555 10 C 0.404 3.596 11 O -0.594 6.594 12 C 0.042 3.958 13 N -0.513 5.513 14 C 0.025 3.975 15 C 0.120 3.880 16 N -0.605 5.605 17 C 0.522 3.478 18 O -0.545 6.545 19 C -0.105 4.105 20 H 0.098 0.902 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.146 4.146 24 C 0.092 3.908 25 H 0.084 0.916 26 F -0.214 7.214 27 C -0.128 4.128 28 C 0.113 3.887 29 C 0.021 3.979 30 H 0.273 0.727 31 H 0.393 0.607 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.750 -18.458 7.810 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.190 5.190 10 C 0.189 3.811 11 O -0.481 6.481 12 C -0.090 4.090 13 N -0.236 5.236 14 C -0.104 4.104 15 C -0.002 4.002 16 N -0.338 5.338 17 C 0.310 3.690 18 O -0.422 6.422 19 C -0.126 4.126 20 H 0.116 0.884 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.184 4.184 24 C 0.056 3.944 25 H 0.102 0.898 26 F -0.195 7.195 27 C -0.166 4.166 28 C -0.010 4.010 29 C -0.107 4.107 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.103 0.897 48 H 0.100 0.900 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.529 -18.785 7.288 21.510 hybrid contribution 0.012 1.836 -0.057 1.837 sum 7.541 -16.950 7.231 19.911 Atomic orbital electron populations 1.69615 1.05977 1.28283 1.49930 1.25291 0.95628 0.99862 0.96980 0.85811 0.79733 0.81057 0.77835 1.19216 1.20627 1.20632 1.19757 0.93400 0.82352 1.47719 0.87934 1.42065 1.09324 1.04951 1.62635 1.21068 0.88831 0.85973 0.85188 1.90427 1.13898 1.86871 1.56940 1.22057 0.95361 0.88162 1.03432 1.62455 1.18241 1.40284 1.02591 1.22672 0.96000 0.98391 0.93315 1.21699 0.95536 0.97964 0.85035 1.48108 1.06838 1.70435 1.08414 1.20419 0.81618 0.75918 0.91056 1.90679 1.62560 1.50616 1.38346 1.21263 0.96297 0.99757 0.95278 0.88384 1.21535 1.01708 0.94796 0.96834 1.21465 0.94250 1.02586 0.96851 1.22156 0.97834 0.96235 1.02199 1.21585 0.76977 0.97787 0.98057 0.89795 1.92815 1.34358 1.94965 1.97315 1.21954 0.93691 1.04516 0.96414 1.22023 0.93666 0.98346 0.86944 1.22781 0.97609 0.97867 0.92493 0.91751 0.77361 0.89165 0.89251 0.90118 0.90576 0.89149 0.91428 0.90776 0.90947 0.91154 0.90690 0.90668 0.90598 0.89563 0.90200 0.90965 0.89732 0.90018 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.78 13.05 55.50 0.72 -23.05 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.16 9.68 -14.94 -0.14 -8.31 16 8 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 9 N -0.55 -13.39 5.29 -10.97 -0.06 -13.45 16 10 C 0.40 8.82 7.17 -10.99 -0.08 8.74 16 11 O -0.59 -14.72 11.26 5.55 0.06 -14.66 16 12 C 0.04 0.68 5.84 -4.98 -0.03 0.65 16 13 N -0.51 -7.78 4.83 -235.46 -1.14 -8.91 16 14 C 0.02 0.39 5.22 -3.70 -0.02 0.37 16 15 C 0.12 1.67 6.61 -3.60 -0.02 1.64 16 16 N -0.60 -8.08 3.00 -172.18 -0.52 -8.60 16 17 C 0.52 7.29 6.84 -10.98 -0.08 7.22 16 18 O -0.54 -9.56 15.50 5.55 0.09 -9.47 16 19 C -0.10 -1.06 1.71 -91.78 -0.16 -1.22 16 20 H 0.10 0.89 6.24 -51.93 -0.32 0.56 16 21 C -0.11 -0.85 5.16 -26.73 -0.14 -0.99 16 22 C -0.11 -0.68 5.92 -26.73 -0.16 -0.84 16 23 C -0.15 -1.04 5.66 -26.73 -0.15 -1.19 16 24 C 0.09 0.85 3.88 -26.71 -0.10 0.75 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 F -0.21 -2.54 17.08 2.25 0.04 -2.50 16 27 C -0.13 -1.40 4.43 -26.70 -0.12 -1.52 16 28 C 0.11 1.27 6.09 -3.36 -0.02 1.25 16 29 C 0.02 0.31 5.12 -3.46 -0.02 0.29 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 32 H 0.09 1.35 8.05 -51.93 -0.42 0.94 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.62 5.78 -51.93 -0.30 1.32 16 35 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 36 H 0.09 1.34 7.05 -51.93 -0.37 0.98 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.51 7.73 -51.93 -0.40 0.11 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.09 1.04 7.89 -51.93 -0.41 0.63 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.76 5.50 -51.93 -0.29 0.48 16 48 H 0.08 1.53 5.70 -51.93 -0.30 1.23 16 49 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -31.83 380.61 -9.12 -40.95 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -7.70 Total: 10.95 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -1.33 Total: 7.40 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.99 Total: -54.02 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: 0.15 Total: -24.13 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.83 -9.12 -40.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112835721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.611 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds