Wall clock time and date at job start Wed Apr 1 2020 01:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99787 * 2 1 4 4 H 1.48500 * 109.47255 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47147 * 299.99864 * 3 2 1 6 6 H 1.48497 * 109.47191 * 60.00021 * 3 2 1 7 7 C 1.38949 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00584 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99857 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00019 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99839 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46849 * 179.97438 * 12 10 9 14 14 C 1.46899 * 110.99778 * 169.99791 * 13 12 10 15 15 C 1.53241 * 109.33965 * 187.25210 * 14 13 12 16 16 N 1.47074 * 108.51944 * 306.16869 * 15 14 13 17 17 C 1.34780 * 120.88265 * 231.20412 * 16 15 14 18 18 O 1.21280 * 119.99716 * 355.01677 * 17 16 15 19 19 C 1.50699 * 120.00072 * 175.01932 * 17 16 15 20 20 H 1.09003 * 109.46637 * 325.05533 * 19 17 16 21 21 C 1.52991 * 109.47575 * 85.06457 * 19 17 16 22 22 C 1.53003 * 109.47144 * 180.02562 * 21 19 17 23 23 C 1.53002 * 109.46667 * 299.99395 * 22 21 19 24 24 C 1.53000 * 109.47233 * 60.00515 * 23 22 21 25 25 H 1.08995 * 109.47471 * 179.97438 * 24 23 22 26 26 F 1.39905 * 109.46936 * 59.99385 * 24 23 22 27 27 C 1.53003 * 109.46908 * 299.99919 * 24 23 22 28 28 C 1.47079 * 118.23683 * 51.18814 * 16 15 14 29 29 C 1.46897 * 111.00005 * 294.29943 * 13 12 10 30 30 H 0.97003 * 120.00229 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99652 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47344 * 59.99444 * 12 10 9 33 33 H 1.09001 * 109.46771 * 299.99618 * 12 10 9 34 34 H 1.09002 * 109.49351 * 307.21142 * 14 13 12 35 35 H 1.09004 * 109.49000 * 67.29304 * 14 13 12 36 36 H 1.09001 * 109.62914 * 65.88262 * 15 14 13 37 37 H 1.09001 * 109.62721 * 186.45976 * 15 14 13 38 38 H 1.09006 * 109.46826 * 299.99647 * 21 19 17 39 39 H 1.08996 * 109.47622 * 59.99561 * 21 19 17 40 40 H 1.09003 * 109.46601 * 180.02562 * 22 21 19 41 41 H 1.08996 * 109.47283 * 59.99909 * 22 21 19 42 42 H 1.09001 * 109.47269 * 300.00434 * 23 22 21 43 43 H 1.09004 * 109.46960 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47155 * 299.99813 * 27 24 23 45 45 H 1.08993 * 109.47029 * 179.97438 * 27 24 23 46 46 H 1.09005 * 109.62732 * 189.10166 * 28 16 15 47 47 H 1.08997 * 109.62962 * 68.52467 * 28 16 15 48 48 H 1.09004 * 109.49025 * 292.70784 * 29 13 12 49 49 H 1.08997 * 109.49497 * 52.75778 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1985 -5.9794 -0.0016 14 6 1.5141 -7.2573 0.2360 15 6 2.5567 -8.3671 0.4083 16 7 3.4544 -8.3496 -0.7566 17 6 3.7045 -9.4753 -1.4543 18 8 3.2598 -10.5370 -1.0719 19 6 4.5365 -9.4149 -2.7093 20 1 4.3382 -8.4791 -3.2319 21 6 6.0198 -9.4898 -2.3420 22 6 6.8645 -9.4277 -3.6162 23 6 6.5040 -10.6049 -4.5247 24 6 5.0207 -10.5301 -4.8921 25 1 4.7640 -11.3685 -5.5396 26 9 4.7663 -9.3287 -5.5623 27 6 4.1760 -10.5920 -3.6178 28 6 4.0718 -7.0709 -1.1402 29 6 2.9695 -6.0122 -1.2515 30 1 -0.4850 0.8401 -0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6174 -4.9205 -0.8913 33 1 0.6169 -4.9209 0.8887 34 1 0.9090 -7.1834 1.1396 35 1 0.8725 -7.4898 -0.6140 36 1 3.1324 -8.1908 1.3169 37 1 2.0561 -9.3334 0.4703 38 1 6.2766 -8.6509 -1.6951 39 1 6.2180 -10.4255 -1.8194 40 1 7.9212 -9.4815 -3.3545 41 1 6.6662 -8.4917 -4.1384 42 1 6.7023 -11.5409 -4.0025 43 1 7.1061 -10.5610 -5.4323 44 1 4.3742 -11.5280 -3.0956 45 1 3.1193 -10.5383 -3.8795 46 1 4.5729 -7.1803 -2.1020 47 1 4.7931 -6.7701 -0.3805 48 1 2.3076 -6.2621 -2.0807 49 1 3.4195 -5.0351 -1.4271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112835722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:56 Heat of formation + Delta-G solvation = -123.447551 kcal Electronic energy + Delta-G solvation = -30738.444183 eV Core-core repulsion = 26421.242621 eV Total energy + Delta-G solvation = -4317.201562 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.91517 -40.59531 -38.86997 -37.66730 -36.98230 -34.54621 -33.80114 -31.89174 -31.28985 -30.97189 -30.55944 -28.78841 -25.89484 -24.45775 -23.80504 -23.27764 -23.01492 -21.17689 -20.00278 -19.29737 -18.92868 -17.92889 -17.48307 -16.78185 -16.12487 -15.78734 -15.67040 -15.44838 -15.24047 -15.11445 -14.87740 -14.77712 -14.48296 -14.07490 -13.98102 -13.72263 -13.63975 -13.51467 -13.01360 -12.87208 -12.66393 -12.42374 -12.19325 -11.97764 -11.87753 -11.65902 -11.55358 -11.48561 -11.25200 -11.21061 -11.14758 -11.08725 -10.82827 -10.73256 -10.45491 -10.36429 -10.25369 -9.69717 -9.51454 -8.87868 -8.39982 -8.01703 -7.91888 -6.44678 -3.85619 2.50138 2.86086 3.14224 3.25239 3.31951 3.85064 3.91295 4.05909 4.13349 4.20270 4.27156 4.42867 4.60733 4.65350 4.78707 4.86843 4.89897 4.98489 4.99325 5.06006 5.10994 5.19119 5.21231 5.26078 5.33884 5.41354 5.49070 5.52738 5.56300 5.66006 5.69935 5.72978 5.76636 5.78315 5.83018 5.85995 5.88420 6.03179 6.11890 6.16837 6.22754 6.46586 7.11212 7.27977 7.36948 7.52601 8.03294 8.06069 8.57987 9.14933 9.51049 10.02043 10.73031 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.002347 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.424933 B =11928.911859 C =12871.951723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.578 6.578 12 C 0.046 3.954 13 N -0.514 5.514 14 C 0.040 3.960 15 C 0.119 3.881 16 N -0.610 5.610 17 C 0.522 3.478 18 O -0.549 6.549 19 C -0.109 4.109 20 H 0.100 0.900 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.147 4.147 24 C 0.092 3.908 25 H 0.085 0.915 26 F -0.212 7.212 27 C -0.126 4.126 28 C 0.112 3.888 29 C 0.038 3.962 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.034 0.966 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.027 0.973 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.573 -20.882 -6.988 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.229 3.771 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.088 4.088 15 C -0.004 4.004 16 N -0.343 5.343 17 C 0.310 3.690 18 O -0.428 6.428 19 C -0.130 4.130 20 H 0.118 0.882 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.185 4.185 24 C 0.056 3.944 25 H 0.103 0.897 26 F -0.193 7.193 27 C -0.164 4.164 28 C -0.011 4.011 29 C -0.091 4.091 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.045 0.955 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.342 -21.167 -6.407 23.636 hybrid contribution -1.021 0.982 -0.630 1.550 sum 7.322 -20.185 -7.037 22.595 Atomic orbital electron populations 1.69617 1.05964 1.28102 1.50565 1.25270 0.95629 0.99765 0.97301 0.85804 0.79713 0.81138 0.77717 1.19191 1.20769 1.20750 1.19742 0.93376 0.82143 1.47518 0.87812 1.41887 1.09230 1.04628 1.64224 1.19703 0.88393 0.84496 0.84520 1.90473 1.13639 1.86868 1.55317 1.21858 0.93893 0.91097 1.01653 1.61504 1.25314 1.01452 1.35622 1.22513 0.95413 0.89590 1.01333 1.21691 0.91559 0.99018 0.88141 1.48267 1.46948 1.08859 1.30192 1.20540 0.80409 0.83283 0.84749 1.90657 1.53078 1.28931 1.70093 1.21315 0.96057 1.01395 0.94238 0.88212 1.21527 0.91819 1.03305 0.98159 1.21506 0.99846 0.98900 0.95430 1.22156 0.94944 1.00387 1.00965 1.21587 0.96061 0.83871 0.92918 0.89692 1.92815 1.95396 1.48932 1.82140 1.21968 1.00478 0.99461 0.94532 1.21995 0.95976 0.81738 1.01373 1.22657 0.95387 1.01550 0.89467 0.91894 0.77486 0.93441 0.89177 0.89481 0.94763 0.90596 0.88985 0.90774 0.91045 0.90906 0.90882 0.90009 0.90657 0.88942 0.90533 0.89445 0.89886 0.95464 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.11 9.68 -14.93 -0.14 -8.26 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.88 5.29 -10.96 -0.06 -13.94 16 10 C 0.44 10.03 7.44 -10.99 -0.08 9.95 16 11 O -0.58 -14.75 13.91 5.55 0.08 -14.68 16 12 C 0.05 0.79 5.45 -4.97 -0.03 0.77 16 13 N -0.51 -8.17 4.37 -235.76 -1.03 -9.20 16 14 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16 15 C 0.12 1.48 6.58 -3.60 -0.02 1.45 16 16 N -0.61 -7.70 3.01 -172.47 -0.52 -8.22 16 17 C 0.52 6.63 6.81 -10.98 -0.07 6.55 16 18 O -0.55 -8.47 15.58 5.56 0.09 -8.39 16 19 C -0.11 -1.08 1.55 -91.77 -0.14 -1.22 16 20 H 0.10 1.01 6.11 -51.93 -0.32 0.69 16 21 C -0.11 -0.91 5.03 -26.73 -0.13 -1.04 16 22 C -0.12 -0.84 5.80 -26.73 -0.16 -0.99 16 23 C -0.15 -0.92 5.72 -26.73 -0.15 -1.08 16 24 C 0.09 0.70 4.12 -26.73 -0.11 0.59 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 F -0.21 -2.19 16.04 2.25 0.04 -2.16 16 27 C -0.13 -1.13 4.53 -26.73 -0.12 -1.25 16 28 C 0.11 1.40 6.00 -3.60 -0.02 1.37 16 29 C 0.04 0.57 5.26 -3.70 -0.02 0.56 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 32 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.09 1.40 7.97 -51.93 -0.41 0.98 16 34 H 0.09 0.99 7.99 -51.93 -0.41 0.57 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.14 7.10 -51.93 -0.37 0.77 16 38 H 0.07 0.62 7.43 -51.93 -0.39 0.23 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.57 7.80 -51.93 -0.41 0.17 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.91 5.23 -51.93 -0.27 0.64 16 47 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.12 2.12 5.76 -51.93 -0.30 1.82 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -31.82 383.38 -9.02 -40.84 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -7.77 Total: 9.36 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -1.33 Total: 8.38 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.88 Total: -54.83 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.16 Total: -23.06 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.82 -9.02 -40.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112835722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.605 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds