Wall clock time and date at job start Wed Apr 1 2020 01:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99787 * 2 1 4 4 H 1.48500 * 109.47255 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47147 * 299.99864 * 3 2 1 6 6 H 1.48497 * 109.47191 * 60.00021 * 3 2 1 7 7 C 1.38949 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00584 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99857 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00019 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99839 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46849 * 179.97438 * 12 10 9 14 14 C 1.46899 * 110.99778 * 169.99791 * 13 12 10 15 15 C 1.53241 * 109.33965 * 187.25210 * 14 13 12 16 16 N 1.47074 * 108.51944 * 306.16869 * 15 14 13 17 17 C 1.34780 * 120.88265 * 231.20412 * 16 15 14 18 18 O 1.21280 * 119.99716 * 355.01677 * 17 16 15 19 19 C 1.50699 * 120.00072 * 175.01932 * 17 16 15 20 20 H 1.09003 * 109.46637 * 325.05533 * 19 17 16 21 21 C 1.52991 * 109.47575 * 85.06457 * 19 17 16 22 22 C 1.53003 * 109.47144 * 180.02562 * 21 19 17 23 23 C 1.53002 * 109.46667 * 299.99395 * 22 21 19 24 24 C 1.53000 * 109.47233 * 60.00515 * 23 22 21 25 25 H 1.08995 * 109.47471 * 179.97438 * 24 23 22 26 26 F 1.39905 * 109.46936 * 59.99385 * 24 23 22 27 27 C 1.53003 * 109.46908 * 299.99919 * 24 23 22 28 28 C 1.47079 * 118.23683 * 51.18814 * 16 15 14 29 29 C 1.46897 * 111.00005 * 294.29943 * 13 12 10 30 30 H 0.97003 * 120.00229 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99652 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47344 * 59.99444 * 12 10 9 33 33 H 1.09001 * 109.46771 * 299.99618 * 12 10 9 34 34 H 1.09002 * 109.49351 * 307.21142 * 14 13 12 35 35 H 1.09004 * 109.49000 * 67.29304 * 14 13 12 36 36 H 1.09001 * 109.62914 * 65.88262 * 15 14 13 37 37 H 1.09001 * 109.62721 * 186.45976 * 15 14 13 38 38 H 1.09006 * 109.46826 * 299.99647 * 21 19 17 39 39 H 1.08996 * 109.47622 * 59.99561 * 21 19 17 40 40 H 1.09003 * 109.46601 * 180.02562 * 22 21 19 41 41 H 1.08996 * 109.47283 * 59.99909 * 22 21 19 42 42 H 1.09001 * 109.47269 * 300.00434 * 23 22 21 43 43 H 1.09004 * 109.46960 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47155 * 299.99813 * 27 24 23 45 45 H 1.08993 * 109.47029 * 179.97438 * 27 24 23 46 46 H 1.09005 * 109.62732 * 189.10166 * 28 16 15 47 47 H 1.08997 * 109.62962 * 68.52467 * 28 16 15 48 48 H 1.09004 * 109.49025 * 292.70784 * 29 13 12 49 49 H 1.08997 * 109.49497 * 52.75778 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1985 -5.9794 -0.0016 14 6 1.5141 -7.2573 0.2360 15 6 2.5567 -8.3671 0.4083 16 7 3.4544 -8.3496 -0.7566 17 6 3.7045 -9.4753 -1.4543 18 8 3.2598 -10.5370 -1.0719 19 6 4.5365 -9.4149 -2.7093 20 1 4.3382 -8.4791 -3.2319 21 6 6.0198 -9.4898 -2.3420 22 6 6.8645 -9.4277 -3.6162 23 6 6.5040 -10.6049 -4.5247 24 6 5.0207 -10.5301 -4.8921 25 1 4.7640 -11.3685 -5.5396 26 9 4.7663 -9.3287 -5.5623 27 6 4.1760 -10.5920 -3.6178 28 6 4.0718 -7.0709 -1.1402 29 6 2.9695 -6.0122 -1.2515 30 1 -0.4850 0.8401 -0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6174 -4.9205 -0.8913 33 1 0.6169 -4.9209 0.8887 34 1 0.9090 -7.1834 1.1396 35 1 0.8725 -7.4898 -0.6140 36 1 3.1324 -8.1908 1.3169 37 1 2.0561 -9.3334 0.4703 38 1 6.2766 -8.6509 -1.6951 39 1 6.2180 -10.4255 -1.8194 40 1 7.9212 -9.4815 -3.3545 41 1 6.6662 -8.4917 -4.1384 42 1 6.7023 -11.5409 -4.0025 43 1 7.1061 -10.5610 -5.4323 44 1 4.3742 -11.5280 -3.0956 45 1 3.1193 -10.5383 -3.8795 46 1 4.5729 -7.1803 -2.1020 47 1 4.7931 -6.7701 -0.3805 48 1 2.3076 -6.2621 -2.0807 49 1 3.4195 -5.0351 -1.4271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112835722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:54 Heat of formation + Delta-G solvation = -144.427820 kcal Electronic energy + Delta-G solvation = -30739.353956 eV Core-core repulsion = 26421.242621 eV Total energy + Delta-G solvation = -4318.111335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.61569 -41.61503 -40.37675 -38.90895 -37.93680 -36.06766 -35.43351 -33.25954 -32.75821 -31.76934 -31.34938 -30.09645 -27.43617 -25.79024 -25.01803 -24.26852 -23.67002 -22.16149 -21.07486 -20.70679 -19.96842 -19.82488 -18.47483 -17.83177 -17.53197 -16.75843 -16.62042 -16.42809 -16.38169 -16.21582 -16.16027 -15.97911 -15.59915 -15.37023 -15.31666 -15.26834 -14.72112 -14.48733 -14.11538 -13.80500 -13.63178 -13.50404 -13.31560 -13.23512 -12.98276 -12.91729 -12.79496 -12.53442 -12.45476 -12.39911 -12.29242 -12.19231 -12.09501 -11.96775 -11.78118 -11.44604 -11.42497 -11.06065 -10.65904 -10.33881 -9.99259 -9.79510 -9.24659 -8.45201 -5.93378 1.37494 1.43095 1.50164 1.56846 1.86906 2.06786 2.29008 2.70447 3.21867 3.25665 3.35942 3.50572 3.60854 3.79263 3.86361 3.92508 3.96261 4.05311 4.11673 4.13225 4.17907 4.25749 4.27400 4.35110 4.44895 4.45653 4.47959 4.52988 4.58734 4.61642 4.70343 4.81082 4.89655 4.91426 5.00916 5.02733 5.05570 5.08194 5.17952 5.24527 5.38753 5.43128 5.44510 5.80164 6.03519 6.11640 6.33433 6.61893 7.04687 7.14773 7.58445 8.13359 8.72464 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.002347 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.424933 B =11928.911859 C =12871.951723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.327 4.327 8 H 0.081 0.919 9 N -0.576 5.576 10 C 0.444 3.556 11 O -0.610 6.610 12 C 0.058 3.942 13 N -0.529 5.529 14 C 0.046 3.954 15 C 0.119 3.881 16 N -0.611 5.611 17 C 0.521 3.479 18 O -0.577 6.577 19 C -0.106 4.106 20 H 0.097 0.903 21 C -0.107 4.107 22 C -0.118 4.118 23 C -0.144 4.144 24 C 0.089 3.911 25 H 0.106 0.894 26 F -0.228 7.228 27 C -0.124 4.124 28 C 0.122 3.878 29 C 0.041 3.959 30 H 0.276 0.724 31 H 0.395 0.605 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.032 0.968 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 -21.849 -7.419 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.457 4.457 8 H 0.099 0.901 9 N -0.213 5.213 10 C 0.231 3.769 11 O -0.496 6.496 12 C -0.073 4.073 13 N -0.255 5.255 14 C -0.082 4.082 15 C -0.004 4.004 16 N -0.343 5.343 17 C 0.311 3.689 18 O -0.458 6.458 19 C -0.127 4.127 20 H 0.115 0.885 21 C -0.144 4.144 22 C -0.155 4.155 23 C -0.182 4.182 24 C 0.053 3.947 25 H 0.124 0.876 26 F -0.210 7.210 27 C -0.162 4.162 28 C 0.000 4.000 29 C -0.088 4.088 30 H 0.086 0.914 31 H 0.229 0.771 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.083 0.917 46 H 0.126 0.874 47 H 0.095 0.905 48 H 0.050 0.950 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.731 -22.146 -6.840 24.768 hybrid contribution -1.145 1.206 -0.478 1.730 sum 7.585 -20.940 -7.319 23.443 Atomic orbital electron populations 1.69679 1.06860 1.29140 1.50687 1.26024 0.96504 1.02413 0.96478 0.84887 0.78151 0.77239 0.78184 1.19611 1.19775 1.19818 1.19687 0.92700 0.83864 1.49459 0.90104 1.41956 1.09316 1.04755 1.65267 1.20667 0.88320 0.85737 0.82176 1.90456 1.15415 1.87675 1.56022 1.21732 0.93589 0.88525 1.03472 1.61486 1.25632 1.02346 1.35988 1.22553 0.95456 0.87880 1.02328 1.21703 0.91552 0.98949 0.88197 1.48329 1.46900 1.08849 1.30242 1.21012 0.80050 0.82672 0.85187 1.90641 1.54294 1.29842 1.70985 1.21347 0.96678 1.01757 0.92927 0.88475 1.21521 0.90730 1.03279 0.98910 1.21504 1.00386 0.98898 0.94720 1.22173 0.93898 1.00670 1.01419 1.21782 0.96784 0.83729 0.92407 0.87600 1.92784 1.95575 1.50150 1.82452 1.21949 1.00167 0.99012 0.95072 1.21885 0.94866 0.80959 1.02307 1.22539 0.96019 1.00657 0.89590 0.91410 0.77122 0.91809 0.86912 0.87568 0.94430 0.90504 0.88713 0.90963 0.90947 0.89458 0.91810 0.88543 0.89577 0.88803 0.91671 0.87433 0.90515 0.94993 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.40 13.05 21.66 0.28 -49.11 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.33 -18.20 9.68 84.04 0.81 -17.39 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -28.82 5.29 -306.98 -1.62 -30.44 16 10 C 0.44 20.29 7.44 87.66 0.65 20.94 16 11 O -0.61 -31.87 13.91 -3.07 -0.04 -31.92 16 12 C 0.06 1.93 5.45 85.56 0.47 2.39 16 13 N -0.53 -16.30 4.37 -899.80 -3.93 -20.24 16 14 C 0.05 1.10 5.62 86.38 0.49 1.58 16 15 C 0.12 2.80 6.58 86.35 0.57 3.37 16 16 N -0.61 -14.87 3.01 -817.95 -2.46 -17.34 16 17 C 0.52 12.79 6.81 87.66 0.60 13.39 16 18 O -0.58 -17.40 15.58 -3.03 -0.05 -17.45 16 19 C -0.11 -1.99 1.55 -11.54 -0.02 -2.01 16 20 H 0.10 1.88 6.11 -2.39 -0.01 1.86 16 21 C -0.11 -1.61 5.03 30.59 0.15 -1.45 16 22 C -0.12 -1.42 5.80 30.60 0.18 -1.25 16 23 C -0.14 -1.47 5.72 30.60 0.17 -1.29 16 24 C 0.09 1.20 4.12 30.60 0.13 1.32 16 25 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 26 F -0.23 -4.46 16.04 44.97 0.72 -3.74 16 27 C -0.12 -2.08 4.53 30.60 0.14 -1.95 16 28 C 0.12 2.99 6.00 86.35 0.52 3.51 16 29 C 0.04 1.23 5.26 86.38 0.45 1.68 16 30 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 32 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 33 H 0.11 3.27 7.97 -2.39 -0.02 3.25 16 34 H 0.11 2.14 7.99 -2.39 -0.02 2.12 16 35 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 2.23 7.10 -2.39 -0.02 2.21 16 38 H 0.07 1.11 7.43 -2.38 -0.02 1.10 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 0.91 7.80 -2.39 -0.02 0.89 16 42 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.09 1.56 7.87 -2.39 -0.02 1.54 16 45 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.11 2.17 5.23 -2.38 -0.01 2.15 16 47 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 49 H 0.08 3.13 5.76 -2.39 -0.01 3.11 16 Total: -1.00 -68.90 383.38 0.93 -67.97 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.23 Total: 35.25 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 5.78 Total: 22.55 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -7.73 Total: -117.13 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.09 Total: -49.36 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.72 Total: -3.74 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -68.90 0.93 -67.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112835722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.458 kcal (2) G-P(sol) polarization free energy of solvation -68.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds