Wall clock time and date at job start Wed Apr 1 2020 00:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 119.99819 * 2 1 4 4 H 1.48496 * 109.47192 * 239.99913 * 3 2 1 5 5 H 1.48497 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47305 * 120.00264 * 3 2 1 7 7 C 1.38948 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99816 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00319 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99583 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00082 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47004 * 176.98203 * 12 10 9 14 14 C 1.46894 * 111.00418 * 296.54647 * 13 12 10 15 15 C 1.53239 * 109.34042 * 187.25075 * 14 13 12 16 16 N 1.47082 * 108.52276 * 306.17110 * 15 14 13 17 17 C 1.34771 * 120.87907 * 231.18877 * 16 15 14 18 18 O 1.21289 * 119.99663 * 185.36213 * 17 16 15 19 19 C 1.50705 * 120.00588 * 5.35727 * 17 16 15 20 20 F 1.39901 * 109.46610 * 49.19820 * 19 17 16 21 21 C 1.52993 * 109.47598 * 169.20147 * 19 17 16 22 22 C 1.52994 * 109.47403 * 179.97438 * 21 19 17 23 23 C 1.52997 * 109.47312 * 300.00223 * 22 21 19 24 24 C 1.53000 * 109.47176 * 59.99842 * 23 22 21 25 25 C 1.52999 * 109.47248 * 299.99936 * 24 23 22 26 26 C 1.47080 * 118.23660 * 51.45760 * 16 15 14 27 27 C 1.46908 * 110.99724 * 60.85033 * 13 12 10 28 28 H 0.97001 * 120.00221 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99817 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.46704 * 56.98822 * 12 10 9 31 31 H 1.08996 * 109.47283 * 296.99124 * 12 10 9 32 32 H 1.09001 * 109.49118 * 67.29169 * 14 13 12 33 33 H 1.09002 * 109.49595 * 307.21477 * 14 13 12 34 34 H 1.09002 * 109.62803 * 186.45665 * 15 14 13 35 35 H 1.08996 * 109.78640 * 65.97772 * 15 14 13 36 36 H 1.09007 * 109.46857 * 59.99994 * 21 19 17 37 37 H 1.09001 * 109.46983 * 300.00215 * 21 19 17 38 38 H 1.08996 * 109.47414 * 179.97438 * 22 21 19 39 39 H 1.09007 * 109.46931 * 60.00270 * 22 21 19 40 40 H 1.09004 * 109.47075 * 179.97438 * 23 22 21 41 41 H 1.08994 * 109.47300 * 299.99675 * 23 22 21 42 42 H 1.09000 * 109.47399 * 60.00065 * 24 23 22 43 43 H 1.08996 * 109.47516 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47025 * 300.00357 * 25 24 23 45 45 H 1.08998 * 109.47690 * 179.97438 * 25 24 23 46 46 H 1.08994 * 109.62641 * 68.24912 * 26 16 15 47 47 H 1.09001 * 109.62587 * 188.83688 * 26 16 15 48 48 H 1.09000 * 109.48777 * 292.70655 * 27 13 12 49 49 H 1.08998 * 109.48937 * 52.75444 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5579 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1969 -5.9785 -0.0750 14 6 2.9486 -5.9473 -1.3366 15 6 3.7955 -7.2189 -1.4543 16 7 4.6194 -7.3454 -0.2425 17 6 5.9495 -7.5448 -0.3281 18 8 6.5988 -7.7438 0.6769 19 6 6.6303 -7.5204 -1.6724 20 9 6.2367 -6.3757 -2.3737 21 6 8.1474 -7.5016 -1.4756 22 6 8.8385 -7.4776 -2.8404 23 6 8.4426 -8.7239 -3.6346 24 6 6.9255 -8.7428 -3.8314 25 6 6.2344 -8.7669 -2.4666 26 6 3.9522 -7.2546 1.0652 27 6 3.1001 -5.9757 1.0837 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3906 -0.0016 30 1 0.5777 -4.8974 -0.8643 31 1 0.6580 -4.9446 0.9133 32 1 3.6003 -5.0737 -1.3502 33 1 2.2524 -5.8952 -2.1737 34 1 4.4407 -7.1494 -2.3301 35 1 3.1448 -8.0884 -1.5471 36 1 8.4540 -8.3936 -0.9292 37 1 8.4294 -6.6139 -0.9095 38 1 9.9193 -7.4637 -2.7002 39 1 8.5319 -6.5858 -3.3872 40 1 8.9346 -8.7066 -4.6071 41 1 8.7492 -9.6157 -3.0879 42 1 6.6189 -7.8511 -4.3782 43 1 6.6434 -9.6309 -4.3967 44 1 6.5409 -9.6586 -1.9198 45 1 5.1535 -8.7798 -2.6067 46 1 3.3138 -8.1258 1.2117 47 1 4.7011 -7.2086 1.8558 48 1 3.7496 -5.1017 1.0363 49 1 2.5136 -5.9437 2.0019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113492094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:16 Heat of formation + Delta-G solvation = -113.220947 kcal Electronic energy + Delta-G solvation = -31793.034714 eV Core-core repulsion = 27476.276611 eV Total energy + Delta-G solvation = -4316.758103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.12931 -40.23451 -39.02740 -37.67677 -36.91539 -34.56356 -33.66360 -31.65110 -31.33896 -31.07672 -30.46888 -28.71559 -25.84452 -24.35680 -23.81849 -23.23906 -22.88115 -21.12617 -19.91364 -19.55786 -19.02607 -17.94250 -17.35522 -16.79041 -16.18829 -16.07723 -15.51763 -15.12299 -15.00315 -14.91485 -14.69995 -14.55253 -14.36546 -13.88462 -13.82297 -13.73387 -13.61540 -13.52735 -12.89268 -12.77790 -12.58174 -12.35558 -12.21115 -11.93920 -11.81607 -11.55894 -11.49320 -11.37292 -11.18509 -11.06783 -10.95189 -10.87373 -10.81883 -10.66325 -10.48413 -10.29737 -10.27468 -9.59154 -9.50875 -9.29484 -8.67206 -8.03544 -7.47367 -6.48591 -3.89980 2.39450 2.85160 3.14767 3.21741 3.26277 3.78596 3.98352 4.12211 4.13060 4.23425 4.30991 4.40961 4.77114 4.79399 4.87140 4.94510 5.02167 5.09276 5.13425 5.15123 5.22151 5.27127 5.35081 5.45298 5.46683 5.59962 5.60748 5.65204 5.74051 5.75165 5.80663 5.81948 5.89729 5.93055 5.96557 5.97725 6.03347 6.13831 6.18007 6.45306 6.52228 6.68364 7.15813 7.32602 7.39039 7.48222 7.97458 7.99323 8.52309 9.09858 9.45369 9.96084 10.67829 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.002885 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.967372 B = 9701.744384 C =10529.787775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.303 4.303 8 H 0.102 0.898 9 N -0.555 5.555 10 C 0.404 3.596 11 O -0.592 6.592 12 C 0.042 3.958 13 N -0.513 5.513 14 C 0.027 3.973 15 C 0.101 3.899 16 N -0.594 5.594 17 C 0.502 3.498 18 O -0.533 6.533 19 C 0.111 3.889 20 F -0.185 7.185 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.143 4.143 26 C 0.119 3.881 27 C 0.021 3.979 28 H 0.273 0.727 29 H 0.393 0.607 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.491 -18.813 -6.487 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.433 4.433 8 H 0.120 0.880 9 N -0.190 5.190 10 C 0.189 3.811 11 O -0.480 6.480 12 C -0.090 4.090 13 N -0.237 5.237 14 C -0.101 4.101 15 C -0.022 4.022 16 N -0.326 5.326 17 C 0.288 3.712 18 O -0.410 6.410 19 C 0.090 3.910 20 F -0.165 7.165 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.159 4.159 24 C -0.157 4.157 25 C -0.181 4.181 26 C -0.003 4.003 27 C -0.108 4.108 28 H 0.083 0.917 29 H 0.226 0.774 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.109 0.891 48 H 0.106 0.894 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.198 -19.156 -5.948 22.066 hybrid contribution -0.104 1.854 -0.024 1.857 sum 9.094 -17.302 -5.972 20.438 Atomic orbital electron populations 1.69598 1.05965 1.28449 1.49889 1.25282 0.95622 0.99823 0.96996 0.85924 0.78819 0.80405 0.79145 1.19848 1.20873 1.19855 1.19665 0.93361 0.82393 1.47867 0.88040 1.42042 1.09292 1.04915 1.62735 1.21084 0.88847 0.85980 0.85171 1.90428 1.13874 1.86806 1.56841 1.22051 0.95272 0.88102 1.03569 1.62462 1.17938 1.40767 1.02492 1.22587 0.97314 0.97981 0.92254 1.22252 0.93983 0.98700 0.87268 1.48092 1.06384 1.69702 1.08429 1.20786 0.82310 0.77221 0.90883 1.90691 1.64138 1.49182 1.37004 1.21111 0.96543 0.84410 0.88947 1.92876 1.91755 1.51928 1.79973 1.21886 0.90666 1.04951 0.98533 1.21561 1.00320 0.98900 0.95180 1.21582 0.95697 0.98257 1.00387 1.21518 0.95357 1.02988 0.95802 1.22285 1.02282 0.96351 0.97160 1.21872 0.95660 0.98220 0.84544 1.22846 0.96117 0.98371 0.93445 0.91678 0.77371 0.89245 0.89145 0.90318 0.90432 0.88412 0.91050 0.89337 0.90150 0.91071 0.91083 0.91501 0.91761 0.90895 0.91009 0.89612 0.89762 0.91182 0.89129 0.89391 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.33 9.68 -14.94 -0.14 -8.48 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 9 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 10 C 0.40 9.08 7.20 -10.99 -0.08 9.00 16 11 O -0.59 -15.14 11.23 5.55 0.06 -15.07 16 12 C 0.04 0.71 5.83 -4.98 -0.03 0.68 16 13 N -0.51 -8.22 4.83 -235.47 -1.14 -9.35 16 14 C 0.03 0.43 5.19 -3.70 -0.02 0.41 16 15 C 0.10 1.30 5.06 -3.60 -0.02 1.28 16 16 N -0.59 -8.69 3.00 -172.18 -0.52 -9.21 16 17 C 0.50 7.61 6.77 -10.99 -0.07 7.53 16 18 O -0.53 -9.38 15.46 5.55 0.09 -9.30 16 19 C 0.11 1.37 0.72 -91.77 -0.07 1.30 16 20 F -0.18 -2.62 13.54 2.25 0.03 -2.59 16 21 C -0.12 -1.37 4.36 -26.74 -0.12 -1.48 16 22 C -0.12 -1.08 5.80 -26.74 -0.16 -1.23 16 23 C -0.12 -0.89 5.92 -26.73 -0.16 -1.04 16 24 C -0.12 -0.91 5.80 -26.73 -0.16 -1.06 16 25 C -0.14 -1.30 4.65 -26.73 -0.12 -1.42 16 26 C 0.12 1.74 6.61 -3.37 -0.02 1.72 16 27 C 0.02 0.34 5.16 -3.46 -0.02 0.32 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 30 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 31 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 32 H 0.08 1.59 5.94 -51.93 -0.31 1.28 16 33 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 34 H 0.10 1.17 3.86 -51.93 -0.20 0.97 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.95 7.98 -51.92 -0.41 0.53 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.69 7.80 -51.92 -0.41 0.28 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.61 7.80 -51.93 -0.41 0.21 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.72 5.73 -51.93 -0.30 0.42 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.09 1.38 7.10 -51.93 -0.37 1.01 16 48 H 0.09 1.85 5.52 -51.93 -0.29 1.56 16 49 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -31.58 374.15 -9.05 -40.63 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -7.58 Total: 12.37 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -1.28 Total: 8.10 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.99 Total: -55.71 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: 0.15 Total: -24.37 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.03 Total: -2.59 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.58 -9.05 -40.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113492094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.588 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds