Wall clock time and date at job start Wed Apr 1 2020 00:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 119.99819 * 2 1 4 4 H 1.48496 * 109.47192 * 239.99913 * 3 2 1 5 5 H 1.48497 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47305 * 120.00264 * 3 2 1 7 7 C 1.38948 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99816 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00319 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99583 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00082 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47004 * 176.98203 * 12 10 9 14 14 C 1.46894 * 111.00418 * 296.54647 * 13 12 10 15 15 C 1.53239 * 109.34042 * 187.25075 * 14 13 12 16 16 N 1.47082 * 108.52276 * 306.17110 * 15 14 13 17 17 C 1.34771 * 120.87907 * 231.18877 * 16 15 14 18 18 O 1.21289 * 119.99663 * 185.36213 * 17 16 15 19 19 C 1.50705 * 120.00588 * 5.35727 * 17 16 15 20 20 F 1.39901 * 109.46610 * 49.19820 * 19 17 16 21 21 C 1.52993 * 109.47598 * 169.20147 * 19 17 16 22 22 C 1.52994 * 109.47403 * 179.97438 * 21 19 17 23 23 C 1.52997 * 109.47312 * 300.00223 * 22 21 19 24 24 C 1.53000 * 109.47176 * 59.99842 * 23 22 21 25 25 C 1.52999 * 109.47248 * 299.99936 * 24 23 22 26 26 C 1.47080 * 118.23660 * 51.45760 * 16 15 14 27 27 C 1.46908 * 110.99724 * 60.85033 * 13 12 10 28 28 H 0.97001 * 120.00221 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99817 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.46704 * 56.98822 * 12 10 9 31 31 H 1.08996 * 109.47283 * 296.99124 * 12 10 9 32 32 H 1.09001 * 109.49118 * 67.29169 * 14 13 12 33 33 H 1.09002 * 109.49595 * 307.21477 * 14 13 12 34 34 H 1.09002 * 109.62803 * 186.45665 * 15 14 13 35 35 H 1.08996 * 109.78640 * 65.97772 * 15 14 13 36 36 H 1.09007 * 109.46857 * 59.99994 * 21 19 17 37 37 H 1.09001 * 109.46983 * 300.00215 * 21 19 17 38 38 H 1.08996 * 109.47414 * 179.97438 * 22 21 19 39 39 H 1.09007 * 109.46931 * 60.00270 * 22 21 19 40 40 H 1.09004 * 109.47075 * 179.97438 * 23 22 21 41 41 H 1.08994 * 109.47300 * 299.99675 * 23 22 21 42 42 H 1.09000 * 109.47399 * 60.00065 * 24 23 22 43 43 H 1.08996 * 109.47516 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47025 * 300.00357 * 25 24 23 45 45 H 1.08998 * 109.47690 * 179.97438 * 25 24 23 46 46 H 1.08994 * 109.62641 * 68.24912 * 26 16 15 47 47 H 1.09001 * 109.62587 * 188.83688 * 26 16 15 48 48 H 1.09000 * 109.48777 * 292.70655 * 27 13 12 49 49 H 1.08998 * 109.48937 * 52.75444 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5579 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1969 -5.9785 -0.0750 14 6 2.9486 -5.9473 -1.3366 15 6 3.7955 -7.2189 -1.4543 16 7 4.6194 -7.3454 -0.2425 17 6 5.9495 -7.5448 -0.3281 18 8 6.5988 -7.7438 0.6769 19 6 6.6303 -7.5204 -1.6724 20 9 6.2367 -6.3757 -2.3737 21 6 8.1474 -7.5016 -1.4756 22 6 8.8385 -7.4776 -2.8404 23 6 8.4426 -8.7239 -3.6346 24 6 6.9255 -8.7428 -3.8314 25 6 6.2344 -8.7669 -2.4666 26 6 3.9522 -7.2546 1.0652 27 6 3.1001 -5.9757 1.0837 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3906 -0.0016 30 1 0.5777 -4.8974 -0.8643 31 1 0.6580 -4.9446 0.9133 32 1 3.6003 -5.0737 -1.3502 33 1 2.2524 -5.8952 -2.1737 34 1 4.4407 -7.1494 -2.3301 35 1 3.1448 -8.0884 -1.5471 36 1 8.4540 -8.3936 -0.9292 37 1 8.4294 -6.6139 -0.9095 38 1 9.9193 -7.4637 -2.7002 39 1 8.5319 -6.5858 -3.3872 40 1 8.9346 -8.7066 -4.6071 41 1 8.7492 -9.6157 -3.0879 42 1 6.6189 -7.8511 -4.3782 43 1 6.6434 -9.6309 -4.3967 44 1 6.5409 -9.6586 -1.9198 45 1 5.1535 -8.7798 -2.6067 46 1 3.3138 -8.1258 1.2117 47 1 4.7011 -7.2086 1.8558 48 1 3.7496 -5.1017 1.0363 49 1 2.5136 -5.9437 2.0019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113492094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:15 Heat of formation + Delta-G solvation = -135.232268 kcal Electronic energy + Delta-G solvation = -31793.989197 eV Core-core repulsion = 27476.276611 eV Total energy + Delta-G solvation = -4317.712586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.19633 -41.48986 -40.56048 -38.77940 -38.11538 -36.20823 -35.31919 -33.35786 -32.66115 -31.85320 -31.49489 -30.08564 -27.46260 -25.80960 -25.04219 -24.30902 -23.72398 -22.27658 -21.22234 -20.69814 -20.42020 -19.79743 -18.54676 -17.87299 -17.81476 -17.19004 -16.73087 -16.52462 -16.29721 -16.14538 -16.07396 -15.80319 -15.66683 -15.41523 -15.22476 -15.14638 -14.55203 -14.51175 -14.22609 -13.72100 -13.61533 -13.51600 -13.26218 -13.20715 -13.14792 -13.01959 -12.92229 -12.73428 -12.49460 -12.27800 -12.16657 -12.13504 -12.10495 -12.05730 -11.71785 -11.51517 -11.42559 -11.06546 -11.02053 -10.68456 -10.03047 -9.89587 -9.06636 -8.49943 -5.99693 1.21704 1.33942 1.36996 1.47370 1.74795 1.98739 2.25530 2.89050 2.99733 3.16085 3.23025 3.30232 3.41343 3.56772 3.86630 3.96409 4.05406 4.09098 4.11938 4.21846 4.30270 4.31404 4.32455 4.42198 4.43171 4.53207 4.54989 4.60508 4.66048 4.66850 4.76122 4.79410 4.93925 4.98155 5.08540 5.11534 5.13687 5.23030 5.25885 5.27773 5.33079 5.37504 5.48347 5.77136 5.95833 5.97549 6.20231 6.55489 6.81599 7.08426 7.51699 8.07719 8.65232 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.002885 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.967372 B = 9701.744384 C =10529.787775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.988 3.012 4 H -0.273 1.273 5 H -0.267 1.267 6 H -0.275 1.275 7 C -0.335 4.335 8 H 0.073 0.927 9 N -0.568 5.568 10 C 0.405 3.595 11 O -0.625 6.625 12 C 0.050 3.950 13 N -0.495 5.495 14 C 0.027 3.973 15 C 0.106 3.894 16 N -0.599 5.599 17 C 0.493 3.507 18 O -0.566 6.566 19 C 0.108 3.892 20 F -0.199 7.199 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.137 4.137 26 C 0.124 3.876 27 C 0.025 3.975 28 H 0.279 0.721 29 H 0.397 0.603 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.029 0.971 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.078 0.922 48 H 0.038 0.962 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.726 -20.936 -7.807 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.812 3.188 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.200 1.200 7 C -0.465 4.465 8 H 0.091 0.909 9 N -0.205 5.205 10 C 0.192 3.808 11 O -0.513 6.513 12 C -0.081 4.081 13 N -0.217 5.217 14 C -0.102 4.102 15 C -0.016 4.016 16 N -0.330 5.330 17 C 0.280 3.720 18 O -0.446 6.446 19 C 0.087 3.913 20 F -0.180 7.180 21 C -0.161 4.161 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.154 4.154 25 C -0.175 4.175 26 C 0.002 3.998 27 C -0.104 4.104 28 H 0.088 0.912 29 H 0.231 0.769 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.047 0.953 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.111 0.889 46 H 0.118 0.882 47 H 0.096 0.904 48 H 0.056 0.944 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.408 -21.293 -7.284 24.024 hybrid contribution 0.169 2.484 0.427 2.526 sum 8.576 -18.810 -6.857 21.780 Atomic orbital electron populations 1.69648 1.06685 1.29426 1.49924 1.25977 0.96507 1.02254 0.96202 0.85065 0.77878 0.77070 0.78800 1.19868 1.19170 1.20008 1.19555 0.92472 0.84339 1.50103 0.90881 1.42103 1.09388 1.04900 1.64088 1.22234 0.88738 0.87276 0.82549 1.90455 1.15876 1.87647 1.57302 1.22185 0.95212 0.84753 1.05988 1.62573 1.17472 1.39267 1.02403 1.22607 0.97270 0.97567 0.92780 1.22362 0.93948 0.98366 0.86877 1.48263 1.06625 1.69161 1.08976 1.21394 0.82383 0.76522 0.91743 1.90663 1.64789 1.50752 1.38353 1.21310 0.96715 0.85385 0.87877 1.92848 1.91924 1.53108 1.80085 1.21901 0.90422 1.03892 0.99840 1.21565 1.00793 0.99555 0.93734 1.21597 0.95669 0.97460 1.00935 1.21547 0.95345 1.03709 0.94832 1.22322 1.03038 0.94574 0.97549 1.21824 0.95381 0.98111 0.84531 1.22742 0.95798 0.97474 0.94392 0.91180 0.76890 0.86504 0.86782 0.95273 0.88370 0.87503 0.87653 0.88844 0.92812 0.89834 0.92342 0.89957 0.90662 0.91825 0.88555 0.88527 0.88904 0.88217 0.90405 0.94372 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.19 13.05 21.66 0.28 -48.90 16 2 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 3 Si 0.99 43.35 29.55 68.60 2.03 45.37 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 8 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 9 N -0.57 -28.67 5.29 -306.98 -1.62 -30.29 16 10 C 0.40 18.56 7.20 87.65 0.63 19.19 16 11 O -0.62 -33.46 11.23 -3.07 -0.03 -33.50 16 12 C 0.05 1.63 5.83 85.56 0.50 2.13 16 13 N -0.49 -15.07 4.83 -898.88 -4.34 -19.41 16 14 C 0.03 0.81 5.19 86.38 0.45 1.26 16 15 C 0.11 2.55 5.06 86.35 0.44 2.99 16 16 N -0.60 -17.16 3.00 -817.05 -2.45 -19.61 16 17 C 0.49 15.03 6.77 87.66 0.59 15.62 16 18 O -0.57 -20.50 15.46 -3.06 -0.05 -20.54 16 19 C 0.11 2.63 0.72 -11.54 -0.01 2.62 16 20 F -0.20 -5.75 13.54 44.97 0.61 -5.14 16 21 C -0.12 -2.78 4.36 30.59 0.13 -2.64 16 22 C -0.12 -2.01 5.80 30.59 0.18 -1.83 16 23 C -0.12 -1.44 5.92 30.59 0.18 -1.26 16 24 C -0.12 -1.46 5.80 30.59 0.18 -1.29 16 25 C -0.14 -2.19 4.65 30.60 0.14 -2.05 16 26 C 0.12 3.53 6.61 86.50 0.57 4.10 16 27 C 0.02 0.82 5.16 86.54 0.45 1.26 16 28 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 29 H 0.40 18.96 7.90 -92.71 -0.73 18.22 16 30 H 0.12 3.24 8.09 -2.38 -0.02 3.22 16 31 H 0.11 3.24 8.13 -2.39 -0.02 3.22 16 32 H 0.03 1.21 5.94 -2.39 -0.01 1.19 16 33 H 0.10 2.58 8.07 -2.39 -0.02 2.56 16 34 H 0.11 2.40 3.86 -2.39 -0.01 2.39 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 1.99 7.98 -2.38 -0.02 1.97 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.13 7.80 -2.38 -0.02 1.11 16 40 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 0.94 7.80 -2.39 -0.02 0.92 16 43 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.09 1.32 5.73 -2.39 -0.01 1.30 16 46 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.08 2.42 7.10 -2.39 -0.02 2.41 16 48 H 0.04 1.68 5.52 -2.39 -0.01 1.67 16 49 H 0.09 2.69 8.10 -2.39 -0.02 2.67 16 Total: -1.00 -72.34 374.15 0.37 -71.97 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: 0.24 Total: 38.17 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 5.71 Total: 21.89 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -8.13 Total: -118.22 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: -0.08 Total: -54.04 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.61 Total: -5.14 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -72.34 0.37 -71.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113492094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.265 kcal (2) G-P(sol) polarization free energy of solvation -72.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds