Wall clock time and date at job start Wed Apr 1 2020 01:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 119.99857 * 2 1 4 4 H 1.48507 * 109.47291 * 269.99963 * 3 2 1 5 5 H 1.48507 * 109.47265 * 29.99847 * 3 2 1 6 6 H 1.48497 * 109.47363 * 149.99821 * 3 2 1 7 7 C 1.38806 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00393 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99807 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00035 * 174.11687 * 9 7 2 11 11 C 1.53002 * 109.46890 * 63.04969 * 10 9 7 12 12 N 1.46504 * 109.47371 * 54.66999 * 11 10 9 13 13 C 1.34777 * 119.99921 * 176.21303 * 12 11 10 14 14 O 1.21778 * 119.99870 * 359.97438 * 13 12 11 15 15 C 1.46203 * 119.99673 * 180.02562 * 13 12 11 16 16 C 1.41738 * 126.80118 * 359.67555 * 15 13 12 17 17 C 1.34520 * 107.77333 * 179.89221 * 16 15 13 18 18 N 1.36950 * 109.60620 * 0.38450 * 17 16 15 19 19 C 1.36708 * 131.34565 * 179.77814 * 18 17 16 20 20 C 1.35001 * 120.74950 * 179.97438 * 19 18 17 21 21 C 1.40313 * 120.38217 * 359.97438 * 20 19 18 22 22 C 1.36341 * 119.45559 * 0.06305 * 21 20 19 23 23 C 1.36945 * 108.74062 * 359.75943 * 18 17 16 24 24 C 1.52989 * 109.47021 * 303.04838 * 10 9 7 25 25 C 1.53002 * 109.47396 * 299.99821 * 24 10 9 26 26 C 1.53002 * 109.46807 * 300.00361 * 25 24 10 27 27 C 1.52995 * 109.47585 * 59.99933 * 26 25 24 28 28 C 1.53002 * 109.47182 * 183.04478 * 10 9 7 29 29 H 0.97001 * 119.99996 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00139 * 353.83729 * 9 7 2 31 31 H 1.09004 * 109.46886 * 174.67062 * 11 10 9 32 32 H 1.09006 * 109.47232 * 294.66641 * 11 10 9 33 33 H 0.97000 * 120.00026 * 356.20559 * 12 11 10 34 34 H 1.07999 * 126.11202 * 0.02562 * 16 15 13 35 35 H 1.08005 * 125.19691 * 180.14242 * 17 16 15 36 36 H 1.07996 * 119.62567 * 359.95682 * 19 18 17 37 37 H 1.07996 * 119.81241 * 180.02562 * 20 19 18 38 38 H 1.08004 * 120.26860 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.33608 * 179.97438 * 22 21 20 40 40 H 1.08994 * 109.47841 * 60.00189 * 24 10 9 41 41 H 1.09010 * 109.47019 * 179.97438 * 24 10 9 42 42 H 1.09002 * 109.47141 * 180.02562 * 25 24 10 43 43 H 1.08997 * 109.46820 * 60.00168 * 25 24 10 44 44 H 1.08997 * 109.47273 * 299.99530 * 26 25 24 45 45 H 1.09006 * 109.46902 * 180.02562 * 26 25 24 46 46 H 1.08988 * 109.47750 * 179.97438 * 27 26 25 47 47 H 1.09005 * 109.46926 * 59.99290 * 27 26 25 48 48 H 1.08997 * 109.47273 * 179.97438 * 28 10 9 49 49 H 1.09003 * 109.47378 * 300.00390 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1120 -2.4643 0.1295 11 6 3.8013 -3.3598 -1.0716 12 7 4.0913 -2.6334 -2.3104 13 6 3.9646 -3.2532 -3.5004 14 8 3.6094 -4.4172 -3.5459 15 6 4.2545 -2.5284 -4.7366 16 6 4.6700 -1.1782 -4.8517 17 6 4.8290 -0.9076 -6.1598 18 7 4.5269 -2.0200 -6.8992 19 6 4.5334 -2.2363 -8.2491 20 6 4.1914 -3.4394 -8.7570 21 6 3.8231 -4.4910 -7.9042 22 6 3.8117 -4.2883 -6.5560 23 6 4.1704 -3.0311 -6.0473 24 6 3.6853 -3.1717 1.4171 25 6 3.9960 -2.2763 2.6181 26 6 5.4985 -1.9914 2.6666 27 6 5.9253 -1.2838 1.3790 28 6 5.6145 -2.1794 0.1779 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3669 -0.0894 31 1 4.4173 -4.2578 -1.0242 32 1 2.7481 -3.6402 -1.0529 33 1 4.3744 -1.7063 -2.2741 34 1 4.8321 -0.4903 -4.0351 35 1 5.1429 0.0430 -6.5651 36 1 4.8150 -1.4354 -8.9167 37 1 4.2022 -3.5937 -9.8258 38 1 3.5494 -5.4527 -8.3125 39 1 3.5302 -5.0876 -5.8866 40 1 2.6150 -3.3748 1.3826 41 1 4.2300 -4.1111 1.5132 42 1 3.6924 -2.7806 3.5355 43 1 3.4511 -1.3373 2.5218 44 1 6.0435 -2.9304 2.7629 45 1 5.7200 -1.3538 3.5225 46 1 6.9955 -1.0805 1.4136 47 1 5.3803 -0.3448 1.2826 48 1 6.1595 -3.1184 0.2747 49 1 5.9186 -1.6753 -0.7395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115624504.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:38 Heat of formation + Delta-G solvation = 21.851989 kcal Electronic energy + Delta-G solvation = -30315.782739 eV Core-core repulsion = 26435.651063 eV Total energy + Delta-G solvation = -3880.131677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.22411 -40.84838 -39.61562 -37.49722 -35.87138 -35.03066 -33.96546 -33.04678 -31.59567 -31.17130 -30.66004 -29.07013 -26.74955 -25.40340 -24.58946 -24.04362 -23.31826 -22.40952 -21.73429 -20.92395 -19.78296 -19.69696 -18.88296 -17.66387 -17.08277 -16.80605 -16.61733 -16.47144 -16.33146 -16.19793 -15.80756 -15.47127 -15.28984 -15.03906 -14.93786 -14.58506 -14.26501 -14.01441 -13.92306 -13.68004 -13.53940 -13.30886 -12.94416 -12.84988 -12.78309 -12.64912 -12.52521 -12.36620 -12.26520 -12.08416 -11.89502 -11.67415 -11.36741 -11.32175 -11.15964 -10.95016 -10.73823 -10.70872 -9.89554 -9.64882 -9.23442 -8.34083 -7.91939 -5.25291 -0.22987 0.25972 1.35393 1.39714 1.43877 1.51178 1.67600 2.35767 2.54657 2.55275 2.77011 3.38510 3.55614 3.60240 3.84594 3.89507 3.93691 3.95475 4.02582 4.06872 4.12523 4.27211 4.36561 4.44187 4.48725 4.63683 4.72154 4.72696 4.77307 4.77771 4.84881 4.88864 4.93313 4.96681 5.05112 5.16780 5.22077 5.23342 5.31507 5.37124 5.42931 5.43810 5.49222 5.58042 5.63490 5.71444 5.75278 5.86031 5.90753 6.31102 6.31551 6.79271 7.18028 7.44268 7.90931 8.12689 9.30363 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.003444 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.467985 B = 8127.415566 C = 9026.359882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.991 5.991 2 C -0.066 4.066 3 Si 0.946 3.054 4 H -0.278 1.278 5 H -0.308 1.308 6 H -0.243 1.243 7 C -0.198 4.198 8 H 0.046 0.954 9 N -0.729 5.729 10 C 0.197 3.803 11 C 0.127 3.873 12 N -0.695 5.695 13 C 0.578 3.422 14 O -0.607 6.607 15 C -0.285 4.285 16 C -0.117 4.117 17 C -0.058 4.058 18 N -0.342 5.342 19 C 0.049 3.951 20 C -0.145 4.145 21 C -0.095 4.095 22 C -0.129 4.129 23 C 0.095 3.905 24 C -0.114 4.114 25 C -0.107 4.107 26 C -0.109 4.109 27 C -0.115 4.115 28 C -0.111 4.111 29 H 0.252 0.748 30 H 0.367 0.633 31 H 0.066 0.934 32 H 0.021 0.979 33 H 0.404 0.596 34 H 0.162 0.838 35 H 0.215 0.785 36 H 0.208 0.792 37 H 0.192 0.808 38 H 0.163 0.837 39 H 0.128 0.872 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.046 0.954 48 H 0.086 0.914 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.403 -2.552 -14.692 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.642 5.642 2 C -0.256 4.256 3 Si 0.774 3.226 4 H -0.205 1.205 5 H -0.236 1.236 6 H -0.167 1.167 7 C -0.329 4.329 8 H 0.064 0.936 9 N -0.373 5.373 10 C 0.107 3.893 11 C 0.000 4.000 12 N -0.343 5.343 13 C 0.370 3.630 14 O -0.492 6.492 15 C -0.294 4.294 16 C -0.139 4.139 17 C -0.181 4.181 18 N -0.005 5.005 19 C -0.072 4.072 20 C -0.164 4.164 21 C -0.116 4.116 22 C -0.148 4.148 23 C -0.015 4.015 24 C -0.153 4.153 25 C -0.145 4.145 26 C -0.146 4.146 27 C -0.152 4.152 28 C -0.149 4.149 29 H 0.060 0.940 30 H 0.201 0.799 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.240 0.760 34 H 0.179 0.821 35 H 0.231 0.769 36 H 0.225 0.775 37 H 0.209 0.791 38 H 0.181 0.819 39 H 0.146 0.854 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.065 0.935 48 H 0.104 0.896 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 18.027 -3.297 -14.868 23.599 hybrid contribution -0.803 1.291 0.472 1.592 sum 17.224 -2.006 -14.396 22.537 Atomic orbital electron populations 1.69912 1.07408 1.26062 1.60854 1.25407 0.95816 1.00908 1.03490 0.85542 0.79013 0.80035 0.77986 1.20481 1.23605 1.16714 1.18714 0.82541 0.92553 1.39088 0.93558 1.42675 1.02084 1.03995 1.88496 1.19980 0.92333 0.85614 0.91381 1.21662 0.98483 0.95089 0.84725 1.45412 1.68202 1.15915 1.04814 1.17475 0.76291 0.85558 0.83697 1.90676 1.51402 1.18863 1.88272 1.19425 1.21710 0.97236 0.91027 1.21297 1.00924 0.94116 0.97515 1.22226 1.13646 0.92331 0.89929 1.41805 1.41931 1.10442 1.06352 1.22618 1.01891 1.01551 0.81113 1.21333 1.01128 0.91044 1.02944 1.21578 0.97021 1.01416 0.91588 1.20831 1.01907 0.94636 0.97386 1.18796 1.03037 0.90346 0.89367 1.21746 0.99766 0.98481 0.95341 1.21325 0.97180 0.99386 0.96605 1.21475 0.94720 1.00923 0.97486 1.21501 1.01245 0.98168 0.94308 1.21722 0.92848 1.01334 0.98974 0.93952 0.79883 0.91619 0.96080 0.75983 0.82083 0.76869 0.77481 0.79080 0.81896 0.85390 0.95098 0.90744 0.92457 0.93879 0.90677 0.91654 0.89887 0.93527 0.89583 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.44 13.97 21.65 0.30 -64.14 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.95 44.42 27.68 68.60 1.90 46.31 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 6 H -0.24 -9.98 6.61 99.48 0.66 -9.33 16 7 C -0.20 -10.87 9.18 84.03 0.77 -10.09 16 8 H 0.05 2.94 7.00 -2.91 -0.02 2.92 16 9 N -0.73 -31.16 3.19 -303.35 -0.97 -32.13 16 10 C 0.20 7.01 0.41 3.60 0.00 7.01 16 11 C 0.13 5.01 4.37 86.38 0.38 5.39 16 12 N -0.69 -26.64 5.08 -467.47 -2.38 -29.01 16 13 C 0.58 24.02 7.77 86.31 0.67 24.69 16 14 O -0.61 -28.87 15.66 -4.60 -0.07 -28.94 16 15 C -0.28 -10.08 6.20 -19.76 -0.12 -10.21 16 16 C -0.12 -3.27 10.27 22.28 0.23 -3.04 16 17 C -0.06 -1.23 11.53 83.04 0.96 -0.28 16 18 N -0.34 -7.84 2.92 -346.29 -1.01 -8.85 16 19 C 0.05 0.68 10.89 83.19 0.91 1.58 16 20 C -0.15 -1.77 9.98 22.03 0.22 -1.56 16 21 C -0.09 -1.73 10.09 22.33 0.23 -1.51 16 22 C -0.13 -3.68 9.72 22.32 0.22 -3.46 16 23 C 0.10 2.99 6.70 39.43 0.26 3.25 16 24 C -0.11 -4.02 4.51 30.59 0.14 -3.89 16 25 C -0.11 -3.50 5.77 30.60 0.18 -3.32 16 26 C -0.11 -2.71 5.92 30.59 0.18 -2.53 16 27 C -0.11 -2.88 5.75 30.60 0.18 -2.70 16 28 C -0.11 -2.99 4.65 30.60 0.14 -2.85 16 29 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.37 14.90 4.58 -92.71 -0.42 14.47 16 31 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.02 1.01 7.51 -2.38 -0.02 0.99 16 33 H 0.40 14.16 6.36 -92.71 -0.59 13.57 16 34 H 0.16 3.94 7.53 -2.91 -0.02 3.91 16 35 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.19 0.62 8.06 -2.91 -0.02 0.59 16 38 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.13 4.23 7.07 -2.91 -0.02 4.21 16 40 H 0.03 1.31 7.22 -2.39 -0.02 1.29 16 41 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.04 1.71 7.60 -2.39 -0.02 1.69 16 44 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 45 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.05 1.37 6.93 -2.38 -0.02 1.35 16 48 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.07 1.72 7.29 -2.39 -0.02 1.71 16 Total: -1.00 -83.04 385.15 3.68 -79.36 By element: Atomic # 1 Polarization: 44.37 SS G_CDS: -0.09 Total: 44.27 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 6.00 Total: -6.87 kcal Atomic # 7 Polarization: -130.08 SS G_CDS: -4.05 Total: -134.13 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.07 Total: -28.94 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.31 kcal Total: -83.04 3.68 -79.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115624504.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.212 kcal (2) G-P(sol) polarization free energy of solvation -83.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds