Wall clock time and date at job start Wed Apr 1 2020 01:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99757 * 2 1 4 4 H 1.48500 * 109.47121 * 269.99817 * 3 2 1 5 5 H 1.48493 * 109.47392 * 30.00160 * 3 2 1 6 6 H 1.48506 * 109.46773 * 150.00093 * 3 2 1 7 7 C 1.38808 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99956 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00468 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00156 * 174.06799 * 9 7 2 11 11 C 1.52994 * 109.47537 * 300.08599 * 10 9 7 12 12 N 1.46509 * 109.46946 * 305.24547 * 11 10 9 13 13 C 1.34776 * 120.00145 * 175.98357 * 12 11 10 14 14 O 1.21603 * 119.99520 * 359.97438 * 13 12 11 15 15 C 1.47492 * 120.00178 * 179.97438 * 13 12 11 16 16 C 1.41204 * 126.36865 * 359.69072 * 15 13 12 17 17 C 1.37995 * 106.86320 * 180.26362 * 16 15 13 18 18 C 1.41384 * 131.98576 * 180.02562 * 17 16 15 19 19 C 1.35740 * 119.32922 * 179.97438 * 18 17 16 20 20 C 1.40826 * 119.72487 * 359.97438 * 19 18 17 21 21 C 1.34537 * 120.58075 * 0.02562 * 20 19 18 22 22 N 1.37439 * 120.74244 * 359.96076 * 21 20 19 23 23 C 1.35121 * 131.27860 * 180.02562 * 22 21 20 24 24 C 1.53009 * 109.46724 * 60.08538 * 10 9 7 25 25 C 1.52994 * 109.47063 * 59.99771 * 24 10 9 26 26 C 1.52991 * 109.47314 * 60.00316 * 25 24 10 27 27 C 1.53001 * 109.47220 * 299.99790 * 26 25 24 28 28 C 1.52994 * 109.47113 * 59.99671 * 27 26 25 29 29 H 0.96996 * 119.99703 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00234 * 354.07806 * 9 7 2 31 31 H 1.08998 * 109.47428 * 185.24771 * 11 10 9 32 32 H 1.09002 * 109.47593 * 65.24377 * 11 10 9 33 33 H 0.96999 * 119.99436 * 355.98193 * 12 11 10 34 34 H 1.07997 * 126.56680 * 0.26001 * 16 15 13 35 35 H 1.07996 * 120.33776 * 359.97438 * 18 17 16 36 36 H 1.08005 * 120.13861 * 180.02562 * 19 18 17 37 37 H 1.08003 * 119.70974 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.62649 * 180.02562 * 21 20 19 39 39 H 1.08003 * 125.62167 * 359.97319 * 23 22 21 40 40 H 1.08997 * 109.46740 * 179.97438 * 24 10 9 41 41 H 1.09001 * 109.47002 * 299.99870 * 24 10 9 42 42 H 1.08997 * 109.47528 * 299.99745 * 25 24 10 43 43 H 1.09005 * 109.46894 * 180.02562 * 25 24 10 44 44 H 1.09000 * 109.47513 * 179.97438 * 26 25 24 45 45 H 1.09003 * 109.47597 * 59.99886 * 26 25 24 46 46 H 1.09005 * 109.46851 * 299.99967 * 27 26 25 47 47 H 1.09001 * 109.47875 * 180.02562 * 27 26 25 48 48 H 1.09005 * 109.47201 * 180.02562 * 28 27 26 49 49 H 1.09005 * 109.47020 * 60.00399 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0521 -3.6534 -0.1322 11 6 2.8174 -3.6666 -1.4569 12 7 1.8895 -3.4031 -2.5596 13 6 2.3552 -3.2864 -3.8190 14 8 3.5456 -3.3995 -4.0399 15 6 1.4209 -3.0217 -4.9292 16 6 0.0204 -2.8732 -4.8276 17 6 -0.4516 -2.6450 -6.1041 18 6 -1.7553 -2.4253 -6.6052 19 6 -1.9308 -2.2236 -7.9360 20 6 -0.8164 -2.2351 -8.7970 21 6 0.4209 -2.4449 -8.3122 22 7 0.6234 -2.6512 -6.9685 23 6 1.7524 -2.8781 -6.2617 24 6 3.0388 -3.7980 1.0283 25 6 2.2735 -3.7847 2.3530 26 6 1.2805 -4.9482 2.3800 27 6 0.2938 -4.8037 1.2196 28 6 1.0590 -4.8169 -0.1051 29 1 -0.4849 0.8400 -0.0004 30 1 0.3595 -2.3904 0.0865 31 1 3.2820 -4.6425 -1.5984 32 1 3.5884 -2.8963 -1.4390 33 1 0.9400 -3.3126 -2.3832 34 1 -0.5686 -2.9279 -3.9240 35 1 -2.6029 -2.4180 -5.9360 36 1 -2.9209 -2.0541 -8.3329 37 1 -0.9563 -2.0742 -9.8557 38 1 1.2646 -2.4501 -8.9863 39 1 2.7498 -2.9382 -6.6716 40 1 3.5790 -4.7396 0.9305 41 1 3.7463 -2.9690 1.0091 42 1 1.7329 -2.8433 2.4509 43 1 2.9765 -3.8873 3.1797 44 1 0.7355 -4.9391 3.3240 45 1 1.8210 -5.8897 2.2821 46 1 -0.2468 -3.8623 1.3175 47 1 -0.4140 -5.6324 1.2390 48 1 0.3561 -4.7135 -0.9318 49 1 1.5997 -5.7584 -0.2031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115759120.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:42 Heat of formation + Delta-G solvation = 37.225016 kcal Electronic energy + Delta-G solvation = -30120.375670 eV Core-core repulsion = 26240.910618 eV Total energy + Delta-G solvation = -3879.465052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14686 -39.33689 -38.22410 -36.34584 -34.34023 -33.28810 -32.97809 -31.15488 -30.23256 -29.95708 -28.46651 -27.73456 -25.65618 -23.75979 -23.72236 -22.41100 -21.90662 -21.72328 -20.35583 -19.37929 -18.27700 -17.70121 -17.12553 -16.75231 -16.25125 -15.46100 -15.26868 -15.21193 -14.97261 -14.42539 -14.38250 -14.21346 -13.91640 -13.69742 -13.56044 -13.32590 -12.87347 -12.71894 -12.36771 -12.04844 -12.00668 -11.79377 -11.69091 -11.67485 -11.54845 -11.30721 -11.03219 -10.84034 -10.72508 -10.53660 -10.46199 -10.13787 -10.04843 -9.76156 -9.57528 -9.43823 -9.25194 -8.84180 -8.57657 -8.19464 -7.38134 -6.94613 -5.75226 -3.03129 0.71902 1.34543 2.33545 2.64137 3.45342 3.46198 3.52137 3.53404 3.88379 4.03952 4.42512 4.62115 4.70136 4.74509 4.95436 5.03477 5.23989 5.28684 5.30502 5.32399 5.49755 5.55445 5.61064 5.68151 5.76314 5.77720 5.85596 5.90139 5.99839 6.06007 6.07136 6.14147 6.19105 6.22616 6.25640 6.30304 6.37589 6.47356 6.56486 6.62884 6.76987 6.80952 6.84393 6.86558 6.86875 7.02129 7.18508 7.22379 7.24918 7.77130 8.24366 8.43241 8.87633 9.56117 10.08832 10.45439 11.46986 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010569 B = 0.003475 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.540150 B = 8054.851528 C = 9080.311093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.007 4.007 3 Si 0.898 3.102 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.283 1.283 7 C -0.227 4.227 8 H 0.068 0.932 9 N -0.709 5.709 10 C 0.191 3.809 11 C 0.118 3.882 12 N -0.689 5.689 13 C 0.582 3.418 14 O -0.563 6.563 15 C -0.159 4.159 16 C -0.152 4.152 17 C 0.021 3.979 18 C -0.068 4.068 19 C -0.143 4.143 20 C -0.139 4.139 21 C 0.041 3.959 22 N -0.343 5.343 23 C 0.013 3.987 24 C -0.117 4.117 25 C -0.109 4.109 26 C -0.113 4.113 27 C -0.115 4.115 28 C -0.114 4.114 29 H 0.253 0.747 30 H 0.384 0.616 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.403 0.597 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.131 0.869 37 H 0.143 0.857 38 H 0.159 0.841 39 H 0.179 0.821 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.058 0.942 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.642 -9.744 -11.367 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.203 4.203 3 Si 0.729 3.271 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.209 1.209 7 C -0.358 4.358 8 H 0.086 0.914 9 N -0.351 5.351 10 C 0.099 3.901 11 C -0.008 4.008 12 N -0.338 5.338 13 C 0.368 3.632 14 O -0.444 6.444 15 C -0.167 4.167 16 C -0.176 4.176 17 C -0.082 4.082 18 C -0.087 4.087 19 C -0.164 4.164 20 C -0.159 4.159 21 C -0.077 4.077 22 N -0.007 5.007 23 C -0.121 4.121 24 C -0.157 4.157 25 C -0.147 4.147 26 C -0.150 4.150 27 C -0.153 4.153 28 C -0.152 4.152 29 H 0.063 0.937 30 H 0.219 0.781 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.239 0.761 34 H 0.172 0.828 35 H 0.161 0.839 36 H 0.149 0.851 37 H 0.160 0.840 38 H 0.177 0.823 39 H 0.196 0.804 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.644 -9.648 -11.733 15.419 hybrid contribution -0.220 1.261 -0.015 1.280 sum -2.864 -8.387 -11.748 14.716 Atomic orbital electron populations 1.69638 1.04911 1.25428 1.58011 1.24625 0.95355 0.97285 1.03055 0.86329 0.78800 0.84464 0.77460 1.21945 1.22010 1.20854 1.19063 0.90930 0.83798 1.42000 0.91378 1.42428 1.06158 0.99388 1.87109 1.19821 0.91589 0.87521 0.91147 1.21840 0.92709 0.99395 0.86900 1.45504 1.11921 1.70659 1.05697 1.17321 0.86824 0.76661 0.82351 1.90715 1.16284 1.52759 1.84670 1.19691 0.93845 1.10094 0.93032 1.21311 0.93557 1.07363 0.95367 1.18784 0.87748 1.11619 0.90063 1.20698 0.94238 0.97872 0.95883 1.20883 0.99048 1.03202 0.93228 1.20672 0.91283 1.03106 1.00847 1.21628 0.99600 1.03902 0.82617 1.41297 1.07986 1.45514 1.05952 1.21967 0.90065 1.09567 0.90491 1.21830 0.98227 1.00096 0.95566 1.21367 0.97543 0.99558 0.96205 1.21473 0.97441 0.98363 0.97739 1.21470 0.97526 1.01775 0.94507 1.21699 0.98231 0.97876 0.97420 0.93721 0.78050 0.93246 0.91469 0.76147 0.82808 0.83923 0.85072 0.83974 0.82343 0.80354 0.93648 0.91815 0.90059 0.93766 0.93059 0.93180 0.90865 0.93245 0.92380 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.48 13.07 55.49 0.73 -25.75 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.23 -5.79 8.73 -15.06 -0.13 -5.92 16 8 H 0.07 1.77 6.75 -52.49 -0.35 1.42 16 9 N -0.71 -15.49 3.55 -47.23 -0.17 -15.66 16 10 C 0.19 3.43 0.40 -131.82 -0.05 3.37 16 11 C 0.12 2.22 4.32 -4.04 -0.02 2.20 16 12 N -0.69 -12.88 5.13 -61.36 -0.31 -13.20 16 13 C 0.58 11.41 7.82 -12.49 -0.10 11.31 16 14 O -0.56 -12.49 16.90 5.27 0.09 -12.40 16 15 C -0.16 -2.74 6.12 -105.06 -0.64 -3.38 16 16 C -0.15 -2.37 10.44 -38.55 -0.40 -2.78 16 17 C 0.02 0.30 6.70 -84.00 -0.56 -0.26 16 18 C -0.07 -0.77 10.11 -39.28 -0.40 -1.17 16 19 C -0.14 -1.34 10.07 -39.50 -0.40 -1.74 16 20 C -0.14 -1.20 9.97 -39.91 -0.40 -1.60 16 21 C 0.04 0.41 10.89 -16.35 -0.18 0.23 16 22 N -0.34 -4.62 2.92 -60.42 -0.18 -4.80 16 23 C 0.01 0.19 11.37 -16.17 -0.18 0.01 16 24 C -0.12 -2.02 4.56 -26.73 -0.12 -2.14 16 25 C -0.11 -1.80 5.76 -26.74 -0.15 -1.96 16 26 C -0.11 -1.62 5.92 -26.74 -0.16 -1.78 16 27 C -0.12 -1.71 5.75 -26.73 -0.15 -1.86 16 28 C -0.11 -1.74 4.65 -26.73 -0.12 -1.87 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.38 8.99 6.53 -40.82 -0.27 8.73 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.45 7.58 -51.93 -0.39 1.06 16 33 H 0.40 7.27 6.24 -40.82 -0.25 7.01 16 34 H 0.15 2.25 7.53 -52.49 -0.40 1.86 16 35 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.18 2.35 8.06 -52.48 -0.42 1.92 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.21 7.16 -51.93 -0.37 0.84 16 42 H 0.08 1.60 7.60 -51.93 -0.39 1.21 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 1.25 6.86 -51.93 -0.36 0.90 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.87 7.11 -51.93 -0.37 0.50 16 49 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -31.46 390.50 -10.62 -42.08 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -7.37 Total: 16.10 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -4.27 Total: -9.63 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.07 Total: -59.41 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.46 -10.62 -42.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115759120.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.307 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds