Wall clock time and date at job start Wed Apr 1 2020 01:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99757 * 2 1 4 4 H 1.48500 * 109.47121 * 269.99817 * 3 2 1 5 5 H 1.48493 * 109.47392 * 30.00160 * 3 2 1 6 6 H 1.48506 * 109.46773 * 150.00093 * 3 2 1 7 7 C 1.38808 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99956 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00468 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00156 * 174.06799 * 9 7 2 11 11 C 1.52994 * 109.47537 * 300.08599 * 10 9 7 12 12 N 1.46509 * 109.46946 * 305.24547 * 11 10 9 13 13 C 1.34776 * 120.00145 * 175.98357 * 12 11 10 14 14 O 1.21603 * 119.99520 * 359.97438 * 13 12 11 15 15 C 1.47492 * 120.00178 * 179.97438 * 13 12 11 16 16 C 1.41204 * 126.36865 * 359.69072 * 15 13 12 17 17 C 1.37995 * 106.86320 * 180.26362 * 16 15 13 18 18 C 1.41384 * 131.98576 * 180.02562 * 17 16 15 19 19 C 1.35740 * 119.32922 * 179.97438 * 18 17 16 20 20 C 1.40826 * 119.72487 * 359.97438 * 19 18 17 21 21 C 1.34537 * 120.58075 * 0.02562 * 20 19 18 22 22 N 1.37439 * 120.74244 * 359.96076 * 21 20 19 23 23 C 1.35121 * 131.27860 * 180.02562 * 22 21 20 24 24 C 1.53009 * 109.46724 * 60.08538 * 10 9 7 25 25 C 1.52994 * 109.47063 * 59.99771 * 24 10 9 26 26 C 1.52991 * 109.47314 * 60.00316 * 25 24 10 27 27 C 1.53001 * 109.47220 * 299.99790 * 26 25 24 28 28 C 1.52994 * 109.47113 * 59.99671 * 27 26 25 29 29 H 0.96996 * 119.99703 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00234 * 354.07806 * 9 7 2 31 31 H 1.08998 * 109.47428 * 185.24771 * 11 10 9 32 32 H 1.09002 * 109.47593 * 65.24377 * 11 10 9 33 33 H 0.96999 * 119.99436 * 355.98193 * 12 11 10 34 34 H 1.07997 * 126.56680 * 0.26001 * 16 15 13 35 35 H 1.07996 * 120.33776 * 359.97438 * 18 17 16 36 36 H 1.08005 * 120.13861 * 180.02562 * 19 18 17 37 37 H 1.08003 * 119.70974 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.62649 * 180.02562 * 21 20 19 39 39 H 1.08003 * 125.62167 * 359.97319 * 23 22 21 40 40 H 1.08997 * 109.46740 * 179.97438 * 24 10 9 41 41 H 1.09001 * 109.47002 * 299.99870 * 24 10 9 42 42 H 1.08997 * 109.47528 * 299.99745 * 25 24 10 43 43 H 1.09005 * 109.46894 * 180.02562 * 25 24 10 44 44 H 1.09000 * 109.47513 * 179.97438 * 26 25 24 45 45 H 1.09003 * 109.47597 * 59.99886 * 26 25 24 46 46 H 1.09005 * 109.46851 * 299.99967 * 27 26 25 47 47 H 1.09001 * 109.47875 * 180.02562 * 27 26 25 48 48 H 1.09005 * 109.47201 * 180.02562 * 28 27 26 49 49 H 1.09005 * 109.47020 * 60.00399 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0521 -3.6534 -0.1322 11 6 2.8174 -3.6666 -1.4569 12 7 1.8895 -3.4031 -2.5596 13 6 2.3552 -3.2864 -3.8190 14 8 3.5456 -3.3995 -4.0399 15 6 1.4209 -3.0217 -4.9292 16 6 0.0204 -2.8732 -4.8276 17 6 -0.4516 -2.6450 -6.1041 18 6 -1.7553 -2.4253 -6.6052 19 6 -1.9308 -2.2236 -7.9360 20 6 -0.8164 -2.2351 -8.7970 21 6 0.4209 -2.4449 -8.3122 22 7 0.6234 -2.6512 -6.9685 23 6 1.7524 -2.8781 -6.2617 24 6 3.0388 -3.7980 1.0283 25 6 2.2735 -3.7847 2.3530 26 6 1.2805 -4.9482 2.3800 27 6 0.2938 -4.8037 1.2196 28 6 1.0590 -4.8169 -0.1051 29 1 -0.4849 0.8400 -0.0004 30 1 0.3595 -2.3904 0.0865 31 1 3.2820 -4.6425 -1.5984 32 1 3.5884 -2.8963 -1.4390 33 1 0.9400 -3.3126 -2.3832 34 1 -0.5686 -2.9279 -3.9240 35 1 -2.6029 -2.4180 -5.9360 36 1 -2.9209 -2.0541 -8.3329 37 1 -0.9563 -2.0742 -9.8557 38 1 1.2646 -2.4501 -8.9863 39 1 2.7498 -2.9382 -6.6716 40 1 3.5790 -4.7396 0.9305 41 1 3.7463 -2.9690 1.0091 42 1 1.7329 -2.8433 2.4509 43 1 2.9765 -3.8873 3.1797 44 1 0.7355 -4.9391 3.3240 45 1 1.8210 -5.8897 2.2821 46 1 -0.2468 -3.8623 1.3175 47 1 -0.4140 -5.6324 1.2390 48 1 0.3561 -4.7135 -0.9318 49 1 1.5997 -5.7584 -0.2031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115759120.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:41 Heat of formation + Delta-G solvation = 19.996869 kcal Electronic energy + Delta-G solvation = -30121.122738 eV Core-core repulsion = 26240.910618 eV Total energy + Delta-G solvation = -3880.212121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.16341 -40.82639 -39.67304 -37.28693 -35.85318 -35.03898 -34.04152 -32.78868 -31.54872 -31.11064 -30.12718 -28.70148 -27.02251 -25.68812 -24.79413 -23.62491 -23.15889 -22.72289 -21.70567 -20.78585 -19.77578 -19.03404 -18.72395 -17.87785 -17.31079 -16.82594 -16.53754 -16.42939 -16.24168 -15.98739 -15.71562 -15.49875 -15.30688 -15.17241 -14.90957 -14.56979 -14.31058 -14.21836 -13.58090 -13.44486 -13.37801 -13.23104 -12.91830 -12.88392 -12.81277 -12.57480 -12.47689 -12.43303 -12.18752 -12.04490 -11.90453 -11.67316 -11.43676 -11.21240 -11.12843 -11.05907 -10.70732 -10.67393 -9.95659 -9.49762 -8.88325 -8.34966 -7.86710 -5.09975 -0.16521 0.38452 1.11880 1.42121 1.45624 1.50149 1.66240 2.45259 2.56112 2.59731 2.64469 3.46628 3.60988 3.78379 3.83270 3.90740 3.93514 4.04109 4.06537 4.15383 4.21405 4.29721 4.41422 4.47889 4.51217 4.57992 4.68379 4.77640 4.78690 4.82853 4.88643 4.91386 4.95682 4.99577 5.09066 5.20291 5.23699 5.24638 5.33065 5.42459 5.47579 5.50456 5.52836 5.59535 5.61242 5.66364 5.74790 5.81742 5.89868 6.29679 6.36666 6.72276 7.34841 7.45661 8.18709 8.44868 9.35859 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010569 B = 0.003475 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.540150 B = 8054.851528 C = 9080.311093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.062 4.062 3 Si 0.942 3.058 4 H -0.303 1.303 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.205 4.205 8 H 0.060 0.940 9 N -0.708 5.708 10 C 0.190 3.810 11 C 0.122 3.878 12 N -0.687 5.687 13 C 0.577 3.423 14 O -0.598 6.598 15 C -0.191 4.191 16 C -0.182 4.182 17 C 0.021 3.979 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.129 4.129 21 C 0.021 3.979 22 N -0.342 5.342 23 C 0.003 3.997 24 C -0.116 4.116 25 C -0.106 4.106 26 C -0.107 4.107 27 C -0.112 4.112 28 C -0.109 4.109 29 H 0.246 0.754 30 H 0.377 0.623 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.405 0.595 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.166 0.834 37 H 0.185 0.815 38 H 0.191 0.809 39 H 0.191 0.809 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.041 0.959 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.076 0.924 48 H 0.058 0.942 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.663 -11.332 -13.359 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.255 4.255 3 Si 0.774 3.226 4 H -0.231 1.231 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.349 5.349 10 C 0.100 3.900 11 C -0.004 4.004 12 N -0.335 5.335 13 C 0.365 3.635 14 O -0.482 6.482 15 C -0.198 4.198 16 C -0.206 4.206 17 C -0.084 4.084 18 C -0.119 4.119 19 C -0.142 4.142 20 C -0.148 4.148 21 C -0.096 4.096 22 N -0.006 5.006 23 C -0.131 4.131 24 C -0.156 4.156 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.150 4.150 28 C -0.147 4.147 29 H 0.055 0.945 30 H 0.211 0.789 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.241 0.759 34 H 0.168 0.832 35 H 0.174 0.826 36 H 0.184 0.816 37 H 0.202 0.798 38 H 0.208 0.792 39 H 0.208 0.792 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.647 -11.265 -13.717 18.121 hybrid contribution 0.045 1.713 0.415 1.764 sum -3.602 -9.552 -13.302 16.767 Atomic orbital electron populations 1.69739 1.05652 1.25136 1.60427 1.25105 0.95987 0.99407 1.04957 0.85599 0.78155 0.82229 0.76589 1.23147 1.22281 1.20215 1.19187 0.90635 0.85100 1.38813 0.92209 1.42455 1.05810 0.99932 1.86677 1.20039 0.92263 0.86898 0.90844 1.21789 0.92163 0.99023 0.87428 1.45510 1.11931 1.70422 1.05628 1.17763 0.86837 0.75822 0.83047 1.90668 1.17714 1.54568 1.85227 1.19584 0.94171 1.12781 0.93287 1.21301 0.93090 1.09785 0.96411 1.19119 0.89159 1.10381 0.89746 1.20974 0.93360 1.00099 0.97479 1.21437 1.01031 0.99439 0.92311 1.21285 0.90210 1.00511 1.02837 1.22412 1.01785 1.04001 0.81378 1.41488 1.07158 1.44685 1.07250 1.22049 0.91067 1.09900 0.90063 1.21809 0.97679 1.00537 0.95537 1.21306 0.98005 0.98848 0.96196 1.21450 0.96872 0.98130 0.98000 1.21437 0.97884 1.01317 0.94318 1.21674 0.97709 0.97314 0.97960 0.94526 0.78885 0.91528 0.94899 0.75864 0.83180 0.82637 0.81649 0.79760 0.79216 0.79224 0.90758 0.94408 0.94001 0.92240 0.91988 0.90727 0.93795 0.90584 0.92380 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.43 13.07 21.65 0.28 -56.14 16 2 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 3 Si 0.94 47.54 29.55 68.60 2.03 49.56 16 4 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 5 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 6 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.20 -10.86 8.73 84.03 0.73 -10.12 16 8 H 0.06 3.25 6.75 -2.91 -0.02 3.23 16 9 N -0.71 -32.02 3.55 -303.35 -1.08 -33.10 16 10 C 0.19 6.86 0.40 3.60 0.00 6.86 16 11 C 0.12 4.72 4.32 86.38 0.37 5.09 16 12 N -0.69 -26.84 5.13 -466.29 -2.39 -29.23 16 13 C 0.58 23.82 7.82 86.68 0.68 24.50 16 14 O -0.60 -27.79 16.90 -4.04 -0.07 -27.86 16 15 C -0.19 -6.89 6.12 -20.15 -0.12 -7.02 16 16 C -0.18 -6.00 10.44 22.94 0.24 -5.76 16 17 C 0.02 0.59 6.70 38.90 0.26 0.85 16 18 C -0.10 -2.12 10.11 22.47 0.23 -1.89 16 19 C -0.12 -1.80 10.07 22.32 0.22 -1.58 16 20 C -0.13 -1.65 9.97 22.06 0.22 -1.43 16 21 C 0.02 0.36 10.89 82.97 0.90 1.27 16 22 N -0.34 -8.93 2.92 -345.07 -1.01 -9.94 16 23 C 0.00 0.10 11.37 84.14 0.96 1.06 16 24 C -0.12 -3.93 4.56 30.60 0.14 -3.79 16 25 C -0.11 -3.41 5.76 30.59 0.18 -3.24 16 26 C -0.11 -2.81 5.92 30.59 0.18 -2.63 16 27 C -0.11 -3.13 5.75 30.59 0.18 -2.96 16 28 C -0.11 -3.17 4.65 30.59 0.14 -3.03 16 29 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.38 18.32 6.53 -92.71 -0.61 17.72 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.03 1.49 7.58 -2.39 -0.02 1.47 16 33 H 0.41 15.38 6.24 -92.71 -0.58 14.81 16 34 H 0.15 4.77 7.53 -2.91 -0.02 4.75 16 35 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 36 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.19 0.84 8.06 -2.91 -0.02 0.81 16 38 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.19 5.11 8.06 -2.91 -0.02 5.09 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.04 1.46 7.16 -2.39 -0.02 1.44 16 42 H 0.04 1.68 7.60 -2.39 -0.02 1.66 16 43 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.04 1.50 6.86 -2.38 -0.02 1.48 16 47 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 48 H 0.06 1.70 7.11 -2.38 -0.02 1.69 16 49 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -72.41 390.50 3.53 -68.88 By element: Atomic # 1 Polarization: 44.87 SS G_CDS: -0.22 Total: 44.65 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 5.98 Total: -6.83 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -4.19 Total: -128.41 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.07 Total: -27.86 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.56 kcal Total: -72.41 3.53 -68.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115759120.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.881 kcal (2) G-P(sol) polarization free energy of solvation -72.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds