Wall clock time and date at job start Wed Apr 1 2020 00:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 C 1.53947 * 113.57905 * 252.72172 * 14 13 12 16 16 C 1.52910 * 86.78050 * 220.66422 * 15 14 13 17 17 C 1.52905 * 88.04283 * 24.89909 * 16 15 14 18 18 C 1.52910 * 121.13499 * 150.61962 * 16 15 14 19 19 C 1.53946 * 86.78632 * 100.82143 * 18 16 15 20 20 N 1.46496 * 113.58514 * 139.33630 * 19 18 16 21 21 C 1.34772 * 120.00113 * 107.27619 * 20 19 18 22 22 O 1.21277 * 119.99942 * 0.02562 * 21 20 19 23 23 C 1.50708 * 119.99785 * 180.02562 * 21 20 19 24 24 C 1.53001 * 109.46535 * 180.02562 * 23 21 20 25 25 C 1.53008 * 109.46473 * 180.02562 * 24 23 21 26 26 F 1.39906 * 109.46556 * 179.97438 * 25 24 23 27 27 C 1.52908 * 121.13875 * 259.17529 * 16 15 14 28 28 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 31 31 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 32 32 H 1.00899 * 111.00283 * 303.95218 * 13 12 10 33 33 H 1.09002 * 112.82082 * 23.91127 * 14 13 12 34 34 H 1.09000 * 113.66849 * 335.13520 * 15 14 13 35 35 H 1.08998 * 113.66423 * 106.19231 * 15 14 13 36 36 H 1.08993 * 113.65988 * 220.62621 * 17 16 15 37 37 H 1.08999 * 113.66243 * 89.57520 * 17 16 15 38 38 H 1.08999 * 113.66166 * 215.29288 * 18 16 15 39 39 H 1.09001 * 113.66107 * 346.34440 * 18 16 15 40 40 H 1.09006 * 113.58015 * 270.13420 * 19 18 16 41 41 H 0.97004 * 119.99651 * 287.28602 * 20 19 18 42 42 H 1.09002 * 109.46809 * 300.00194 * 23 21 20 43 43 H 1.08993 * 109.47254 * 60.00429 * 23 21 20 44 44 H 1.08992 * 109.47399 * 299.99509 * 24 23 21 45 45 H 1.09002 * 109.47507 * 60.00102 * 24 23 21 46 46 H 1.09002 * 109.46764 * 299.99805 * 25 24 23 47 47 H 1.08993 * 109.47362 * 60.00079 * 25 24 23 48 48 H 1.09005 * 113.66037 * 13.65509 * 27 16 15 49 49 H 1.08999 * 113.66562 * 144.61376 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 6 1.5736 -8.0121 1.3455 16 6 1.7774 -9.2909 0.5323 17 6 2.3287 -8.4216 -0.5983 18 6 2.5825 -10.4641 1.0922 19 6 1.2303 -11.1261 1.4138 20 7 1.1998 -12.5635 1.1329 21 6 1.2064 -13.4490 2.1489 22 8 1.2370 -13.0558 3.2957 23 6 1.1756 -14.9278 1.8597 24 6 1.1896 -15.7053 3.1774 25 6 1.1590 -17.2067 2.8838 26 9 1.1724 -17.9177 4.0886 27 6 0.6246 -10.2659 0.2899 28 1 -0.4850 0.8401 -0.0004 29 1 0.3535 -2.3906 0.0002 30 1 0.6170 -4.9209 0.8886 31 1 0.6176 -4.9205 -0.8913 32 1 2.8335 -5.9120 -0.7829 33 1 0.4893 -7.2046 -0.4085 34 1 2.4378 -7.7355 1.9495 35 1 0.6396 -7.9950 1.9071 36 1 1.9979 -8.7316 -1.5895 37 1 3.4051 -8.2600 -0.5408 38 1 3.1618 -10.9967 0.3380 39 1 3.1671 -10.2110 1.9767 40 1 0.8490 -10.8798 2.4049 41 1 1.1751 -12.8779 0.2155 42 1 0.2696 -15.1706 1.3045 43 1 2.0489 -15.2004 1.2673 44 1 2.0953 -15.4626 3.7329 45 1 0.3160 -15.4326 3.7695 46 1 0.2534 -17.4497 2.3280 47 1 2.0327 -17.4790 2.2919 48 1 -0.3549 -9.8544 0.5335 49 1 0.6527 -10.7415 -0.6904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121562145.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:11 Heat of formation + Delta-G solvation = -95.747828 kcal Electronic energy + Delta-G solvation = -28092.663067 eV Core-core repulsion = 23776.662655 eV Total energy + Delta-G solvation = -4316.000412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.06316 -41.05311 -39.72740 -38.20180 -36.47609 -34.51132 -34.18919 -33.65149 -31.89365 -31.15172 -27.97923 -26.60455 -26.17097 -25.88634 -24.26223 -23.35840 -22.13553 -20.84054 -20.58498 -19.24530 -18.20134 -17.85115 -17.53335 -17.04998 -16.77853 -16.22458 -16.03611 -15.75705 -15.47309 -15.37314 -15.21891 -14.89179 -14.52481 -14.22662 -14.03134 -13.85761 -13.51252 -13.29204 -13.00270 -12.86481 -12.58059 -12.49663 -12.25669 -12.16248 -12.05700 -11.70933 -11.57627 -11.52474 -11.35549 -11.19224 -11.08943 -11.00182 -10.70481 -10.43376 -10.31890 -10.22201 -10.20512 -10.04734 -9.48832 -9.36857 -8.42158 -8.03953 -7.94280 -6.40485 -3.81356 2.21363 2.71949 3.21015 3.26519 3.31065 3.92681 4.00538 4.06307 4.13128 4.15580 4.19054 4.21089 4.32933 4.44325 4.47694 4.55440 4.64406 4.67145 4.69898 4.84159 4.89372 5.11482 5.19717 5.22396 5.25271 5.29411 5.34365 5.39338 5.44571 5.58368 5.68158 5.69986 5.73372 5.77075 5.83318 5.84985 5.98464 6.00262 6.19961 6.22453 6.30270 6.39376 7.08238 7.32777 7.56084 7.70456 7.81870 8.07620 8.62830 9.19083 9.55825 10.07498 10.77215 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.044212 B = 0.001294 C = 0.001288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.159366 B =21625.456764 C =21734.915592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.657 5.657 14 C 0.062 3.938 15 C -0.101 4.101 16 C -0.103 4.103 17 C -0.124 4.124 18 C -0.134 4.134 19 C 0.123 3.877 20 N -0.721 5.721 21 C 0.512 3.488 22 O -0.537 6.537 23 C -0.140 4.140 24 C -0.140 4.140 25 C 0.062 3.938 26 F -0.218 7.218 27 C -0.121 4.121 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.350 0.650 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.400 0.600 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 -32.435 -1.991 32.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.289 5.289 14 C -0.048 4.048 15 C -0.139 4.139 16 C -0.104 4.104 17 C -0.162 4.162 18 C -0.173 4.173 19 C 0.018 3.982 20 N -0.372 5.372 21 C 0.298 3.702 22 O -0.413 6.413 23 C -0.180 4.180 24 C -0.178 4.178 25 C 0.007 3.993 26 F -0.199 7.199 27 C -0.159 4.159 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.170 0.830 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.578 -31.969 -0.449 32.011 hybrid contribution -0.630 0.741 -1.410 1.713 sum -2.208 -31.229 -1.859 31.362 Atomic orbital electron populations 1.69607 1.05934 1.28233 1.50609 1.25250 0.95622 0.99689 0.97312 0.85920 0.78764 0.80475 0.79074 1.19936 1.20979 1.19874 1.19661 0.93355 0.82291 1.47681 0.87992 1.41862 1.09180 1.04607 1.64408 1.19850 0.88399 0.84765 0.84398 1.90519 1.13786 1.87095 1.55411 1.21730 0.94442 0.91063 1.01026 1.60211 1.18371 0.99532 1.50791 1.23002 0.96535 0.88315 0.96998 1.22836 1.02611 0.91999 0.96477 1.22073 0.96880 0.92786 0.98674 1.23032 1.00827 0.95369 0.96996 1.23263 0.96564 0.96130 1.01340 1.22580 0.97366 0.77999 1.00207 1.46053 1.75293 1.06558 1.09267 1.20629 0.75673 0.88523 0.85374 1.90743 1.48846 1.80727 1.20996 1.21563 1.04808 0.92044 0.99589 1.21923 1.05562 0.92984 0.97359 1.22001 1.03477 0.90803 0.83041 1.92785 1.98169 1.80038 1.48882 1.23081 0.98331 0.96043 0.98465 0.91844 0.77475 0.89682 0.93978 0.82999 0.91255 0.88613 0.91656 0.91602 0.88940 0.89786 0.90706 0.86677 0.76553 0.88482 0.88461 0.89849 0.89864 0.90722 0.90716 0.90485 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.45 9.68 -14.94 -0.14 -8.59 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 10 C 0.44 10.49 7.82 -10.98 -0.09 10.40 16 11 O -0.58 -15.99 15.78 5.55 0.09 -15.91 16 12 C 0.05 0.89 6.01 -4.97 -0.03 0.86 16 13 N -0.66 -10.50 6.18 -106.95 -0.66 -11.16 16 14 C 0.06 0.74 4.14 -66.73 -0.28 0.46 16 15 C -0.10 -1.12 7.64 -26.28 -0.20 -1.32 16 16 C -0.10 -0.88 1.11 -154.71 -0.17 -1.06 16 17 C -0.12 -1.19 7.41 -26.29 -0.19 -1.39 16 18 C -0.13 -1.09 7.64 -26.28 -0.20 -1.29 16 19 C 0.12 0.95 4.24 -66.95 -0.28 0.66 16 20 N -0.72 -4.20 5.35 -52.86 -0.28 -4.48 16 21 C 0.51 3.88 7.83 -10.98 -0.09 3.80 16 22 O -0.54 -6.64 15.58 5.56 0.09 -6.55 16 23 C -0.14 -0.50 5.70 -27.88 -0.16 -0.66 16 24 C -0.14 -0.76 4.96 -26.73 -0.13 -0.89 16 25 C 0.06 0.25 7.55 37.16 0.28 0.53 16 26 F -0.22 -1.75 17.36 2.25 0.04 -1.71 16 27 C -0.12 -0.82 7.59 -26.28 -0.20 -1.02 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.35 5.76 8.25 -39.29 -0.32 5.43 16 33 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.12 1.15 7.47 -51.93 -0.39 0.76 16 41 H 0.40 1.12 8.73 -40.82 -0.36 0.76 16 42 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 45 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 46 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 47 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16 LS Contribution 410.11 15.07 6.18 6.18 Total: -1.00 -34.63 410.11 -8.96 -43.58 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.07 Total: 11.30 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -1.98 Total: 1.02 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.28 Total: -54.04 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.17 Total: -22.46 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.63 -8.96 -43.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121562145.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.166 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds