Wall clock time and date at job start Wed Apr 1 2020 00:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 C 1.53947 * 113.57905 * 252.72172 * 14 13 12 16 16 C 1.52910 * 86.78050 * 220.66422 * 15 14 13 17 17 C 1.52905 * 88.04283 * 24.89909 * 16 15 14 18 18 C 1.52910 * 121.13499 * 150.61962 * 16 15 14 19 19 C 1.53946 * 86.78632 * 100.82143 * 18 16 15 20 20 N 1.46496 * 113.58514 * 139.33630 * 19 18 16 21 21 C 1.34772 * 120.00113 * 107.27619 * 20 19 18 22 22 O 1.21277 * 119.99942 * 0.02562 * 21 20 19 23 23 C 1.50708 * 119.99785 * 180.02562 * 21 20 19 24 24 C 1.53001 * 109.46535 * 180.02562 * 23 21 20 25 25 C 1.53008 * 109.46473 * 180.02562 * 24 23 21 26 26 F 1.39906 * 109.46556 * 179.97438 * 25 24 23 27 27 C 1.52908 * 121.13875 * 259.17529 * 16 15 14 28 28 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 31 31 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 32 32 H 1.00899 * 111.00283 * 303.95218 * 13 12 10 33 33 H 1.09002 * 112.82082 * 23.91127 * 14 13 12 34 34 H 1.09000 * 113.66849 * 335.13520 * 15 14 13 35 35 H 1.08998 * 113.66423 * 106.19231 * 15 14 13 36 36 H 1.08993 * 113.65988 * 220.62621 * 17 16 15 37 37 H 1.08999 * 113.66243 * 89.57520 * 17 16 15 38 38 H 1.08999 * 113.66166 * 215.29288 * 18 16 15 39 39 H 1.09001 * 113.66107 * 346.34440 * 18 16 15 40 40 H 1.09006 * 113.58015 * 270.13420 * 19 18 16 41 41 H 0.97004 * 119.99651 * 287.28602 * 20 19 18 42 42 H 1.09002 * 109.46809 * 300.00194 * 23 21 20 43 43 H 1.08993 * 109.47254 * 60.00429 * 23 21 20 44 44 H 1.08992 * 109.47399 * 299.99509 * 24 23 21 45 45 H 1.09002 * 109.47507 * 60.00102 * 24 23 21 46 46 H 1.09002 * 109.46764 * 299.99805 * 25 24 23 47 47 H 1.08993 * 109.47362 * 60.00079 * 25 24 23 48 48 H 1.09005 * 113.66037 * 13.65509 * 27 16 15 49 49 H 1.08999 * 113.66562 * 144.61376 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 6 1.5736 -8.0121 1.3455 16 6 1.7774 -9.2909 0.5323 17 6 2.3287 -8.4216 -0.5983 18 6 2.5825 -10.4641 1.0922 19 6 1.2303 -11.1261 1.4138 20 7 1.1998 -12.5635 1.1329 21 6 1.2064 -13.4490 2.1489 22 8 1.2370 -13.0558 3.2957 23 6 1.1756 -14.9278 1.8597 24 6 1.1896 -15.7053 3.1774 25 6 1.1590 -17.2067 2.8838 26 9 1.1724 -17.9177 4.0886 27 6 0.6246 -10.2659 0.2899 28 1 -0.4850 0.8401 -0.0004 29 1 0.3535 -2.3906 0.0002 30 1 0.6170 -4.9209 0.8886 31 1 0.6176 -4.9205 -0.8913 32 1 2.8335 -5.9120 -0.7829 33 1 0.4893 -7.2046 -0.4085 34 1 2.4378 -7.7355 1.9495 35 1 0.6396 -7.9950 1.9071 36 1 1.9979 -8.7316 -1.5895 37 1 3.4051 -8.2600 -0.5408 38 1 3.1618 -10.9967 0.3380 39 1 3.1671 -10.2110 1.9767 40 1 0.8490 -10.8798 2.4049 41 1 1.1751 -12.8779 0.2155 42 1 0.2696 -15.1706 1.3045 43 1 2.0489 -15.2004 1.2673 44 1 2.0953 -15.4626 3.7329 45 1 0.3160 -15.4326 3.7695 46 1 0.2534 -17.4497 2.3280 47 1 2.0327 -17.4790 2.2919 48 1 -0.3549 -9.8544 0.5335 49 1 0.6527 -10.7415 -0.6904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121562145.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:10 Heat of formation + Delta-G solvation = -121.390561 kcal Electronic energy + Delta-G solvation = -28093.775020 eV Core-core repulsion = 23776.662655 eV Total energy + Delta-G solvation = -4317.112364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.54027 -41.76176 -40.45420 -40.01657 -37.41284 -35.99906 -34.95863 -34.80006 -33.29814 -32.73079 -28.55760 -28.05486 -26.78982 -26.73648 -25.93478 -24.07463 -22.72558 -21.47144 -21.37721 -21.06923 -19.91968 -18.89595 -18.07575 -17.80809 -17.43595 -17.36031 -16.86425 -16.62022 -16.51471 -16.30070 -16.21302 -15.97364 -15.71423 -15.62535 -15.14535 -14.94849 -14.42195 -14.32351 -13.96670 -13.81878 -13.64103 -13.49778 -13.33685 -13.09903 -12.93175 -12.86560 -12.82467 -12.44017 -12.39148 -12.22835 -12.12822 -11.99351 -11.94583 -11.53339 -11.50924 -11.47581 -11.05827 -10.98176 -10.76240 -10.31695 -10.02278 -9.96415 -9.28578 -8.46999 -5.96101 1.39582 1.41473 1.52501 1.66291 2.04715 2.23819 2.29174 2.96155 3.20250 3.43468 3.47248 3.58098 3.61960 3.71554 3.77208 3.82786 3.90765 3.94438 4.01102 4.19134 4.30018 4.31042 4.41762 4.45638 4.47864 4.50343 4.59321 4.70090 4.79161 4.80503 4.81323 4.90330 4.96598 5.00507 5.02496 5.05143 5.09752 5.22621 5.30205 5.35926 5.40310 5.51879 5.65005 5.94091 6.20373 6.46138 6.59864 6.63162 7.11883 7.33410 7.55546 8.10977 8.70147 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.044212 B = 0.001294 C = 0.001288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.159366 B =21625.456764 C =21734.915592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.066 3.934 13 N -0.673 5.673 14 C 0.057 3.943 15 C -0.109 4.109 16 C -0.095 4.095 17 C -0.114 4.114 18 C -0.132 4.132 19 C 0.122 3.878 20 N -0.706 5.706 21 C 0.504 3.496 22 O -0.596 6.596 23 C -0.128 4.128 24 C -0.140 4.140 25 C 0.058 3.942 26 F -0.243 7.243 27 C -0.104 4.104 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.345 0.655 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.420 0.580 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.078 0.922 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 -34.132 -4.355 34.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.067 4.067 13 N -0.306 5.306 14 C -0.052 4.052 15 C -0.148 4.148 16 C -0.096 4.096 17 C -0.152 4.152 18 C -0.171 4.171 19 C 0.016 3.984 20 N -0.357 5.357 21 C 0.292 3.708 22 O -0.476 6.476 23 C -0.167 4.167 24 C -0.178 4.178 25 C 0.004 3.996 26 F -0.224 7.224 27 C -0.142 4.142 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.258 0.742 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.096 0.904 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.582 -33.699 -2.856 33.919 hybrid contribution -0.311 1.243 -0.641 1.433 sum -2.894 -32.457 -3.497 32.772 Atomic orbital electron populations 1.69667 1.06830 1.29385 1.50190 1.26030 0.96535 1.02374 0.96154 0.84995 0.77786 0.76639 0.78954 1.19578 1.19381 1.19846 1.19648 0.92730 0.84117 1.50182 0.90368 1.41932 1.09312 1.04715 1.65015 1.20940 0.88282 0.86239 0.82174 1.90485 1.15906 1.87995 1.56718 1.21578 0.94126 0.88213 1.02740 1.60209 1.18755 1.00674 1.50953 1.23184 0.97371 0.86789 0.97893 1.22815 1.01691 0.93929 0.96322 1.21959 0.98149 0.92141 0.97340 1.22958 0.99879 0.94062 0.98292 1.23273 0.96694 0.96210 1.00916 1.22348 0.97137 0.79418 0.99463 1.45907 1.74178 1.05535 1.10103 1.21413 0.74360 0.90359 0.84664 1.90727 1.51600 1.81849 1.23446 1.21579 1.07806 0.88386 0.98964 1.21864 1.03251 0.94596 0.98101 1.22253 1.05972 0.89179 0.82209 1.92733 1.98357 1.80565 1.50793 1.23051 0.97316 0.94570 0.99224 0.91264 0.76979 0.88409 0.91422 0.83543 0.89779 0.91047 0.91524 0.89325 0.90046 0.87992 0.92919 0.89634 0.74227 0.85206 0.85348 0.92349 0.92216 0.88134 0.88239 0.90364 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 2 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 3 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.34 -19.41 9.68 84.04 0.81 -18.59 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -29.79 5.29 -306.98 -1.62 -31.41 16 10 C 0.44 21.11 7.82 87.66 0.69 21.79 16 11 O -0.62 -35.23 15.78 -3.07 -0.05 -35.28 16 12 C 0.07 2.29 6.01 85.56 0.51 2.80 16 13 N -0.67 -21.28 6.18 -492.27 -3.04 -24.32 16 14 C 0.06 1.27 4.14 45.55 0.19 1.46 16 15 C -0.11 -2.40 7.64 30.88 0.24 -2.16 16 16 C -0.09 -1.47 1.11 -52.31 -0.06 -1.53 16 17 C -0.11 -1.95 7.41 30.88 0.23 -1.72 16 18 C -0.13 -2.01 7.64 30.88 0.24 -1.78 16 19 C 0.12 1.73 4.24 45.63 0.19 1.92 16 20 N -0.71 -6.60 5.35 -439.53 -2.35 -8.95 16 21 C 0.50 7.09 7.83 87.66 0.69 7.77 16 22 O -0.60 -15.40 15.58 -3.02 -0.05 -15.45 16 23 C -0.13 -0.57 5.70 29.85 0.17 -0.40 16 24 C -0.14 -1.44 4.96 30.60 0.15 -1.29 16 25 C 0.06 0.37 7.55 71.98 0.54 0.91 16 26 F -0.24 -3.81 17.36 44.97 0.78 -3.03 16 27 C -0.10 -1.09 7.59 30.88 0.23 -0.86 16 28 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 30 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 32 H 0.34 11.33 8.25 -89.69 -0.74 10.59 16 33 H 0.08 1.67 7.87 -2.39 -0.02 1.66 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.78 7.47 -2.38 -0.02 1.76 16 41 H 0.42 0.64 8.73 -92.71 -0.81 -0.17 16 42 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.06 0.87 8.10 -2.39 -0.02 0.85 16 45 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 46 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 48 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 49 H 0.12 0.62 8.12 -2.39 -0.02 0.60 16 Total: -1.00 -79.75 410.11 -0.03 -79.78 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -1.30 Total: 34.85 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.29 Total: 8.21 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -6.74 Total: -114.30 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -0.10 Total: -50.73 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.78 Total: -3.03 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -79.75 -0.03 -79.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121562145.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.606 kcal (2) G-P(sol) polarization free energy of solvation -79.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds