Wall clock time and date at job start Wed Apr 1 2020 01:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00305 * 2 1 4 4 H 1.48499 * 109.46738 * 274.58250 * 3 2 1 5 5 H 1.48500 * 109.46839 * 34.57975 * 3 2 1 6 6 H 1.48498 * 109.47212 * 154.57866 * 3 2 1 7 7 C 1.38815 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99474 * 164.37017 * 7 2 1 9 9 N 1.36935 * 120.00353 * 344.37362 * 7 2 1 10 10 C 1.47264 * 121.35366 * 156.16397 * 9 7 2 11 11 C 1.52992 * 108.18617 * 118.47849 * 10 9 7 12 12 N 1.45650 * 110.77252 * 46.72135 * 11 10 9 13 13 C 1.46504 * 117.70028 * 158.10122 * 12 11 10 14 14 H 1.09001 * 109.49852 * 0.06585 * 13 12 11 15 15 C 1.53048 * 109.49479 * 240.00067 * 13 12 11 16 16 C 1.53042 * 109.53299 * 178.68649 * 15 13 12 17 17 C 1.53185 * 109.31306 * 61.36982 * 16 15 13 18 18 N 1.46928 * 108.89373 * 305.28543 * 17 16 15 19 19 C 1.34774 * 120.63264 * 233.67877 * 18 17 16 20 20 O 1.21287 * 119.99398 * 180.02562 * 19 18 17 21 21 C 1.50699 * 120.00208 * 0.02562 * 19 18 17 22 22 C 1.52996 * 109.47092 * 180.02562 * 21 19 18 23 23 C 1.52998 * 109.47081 * 180.02562 * 22 21 19 24 24 F 1.39906 * 109.46970 * 180.02562 * 23 22 21 25 25 C 1.47204 * 118.55152 * 53.54373 * 18 17 16 26 26 C 1.33371 * 124.59250 * 338.38598 * 12 11 10 27 27 O 1.21280 * 118.49330 * 184.01348 * 26 12 11 28 28 C 1.47049 * 121.34902 * 336.14643 * 9 7 2 29 29 H 0.96997 * 119.99853 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.72293 * 358.80504 * 10 9 7 31 31 H 1.09001 * 109.75863 * 238.16633 * 10 9 7 32 32 H 1.09003 * 109.21695 * 286.39127 * 11 10 9 33 33 H 1.08997 * 109.22195 * 167.06021 * 11 10 9 34 34 H 1.08998 * 109.45889 * 58.67112 * 15 13 12 35 35 H 1.08995 * 109.44774 * 298.70035 * 15 13 12 36 36 H 1.08995 * 109.49650 * 301.40966 * 16 15 13 37 37 H 1.09011 * 109.49167 * 181.31697 * 16 15 13 38 38 H 1.08994 * 109.59386 * 65.15128 * 17 16 15 39 39 H 1.09007 * 109.58618 * 185.43280 * 17 16 15 40 40 H 1.09001 * 109.46663 * 299.99744 * 21 19 18 41 41 H 1.08993 * 109.46900 * 59.99628 * 21 19 18 42 42 H 1.09000 * 109.47361 * 299.99761 * 22 21 19 43 43 H 1.09006 * 109.47412 * 60.00026 * 22 21 19 44 44 H 1.09007 * 109.46904 * 299.99338 * 23 22 21 45 45 H 1.08997 * 109.47677 * 59.99759 * 23 22 21 46 46 H 1.09000 * 109.53736 * 186.67225 * 25 18 17 47 47 H 1.09005 * 109.67967 * 66.36675 * 25 18 17 48 48 H 1.08995 * 109.57239 * 342.57689 * 28 9 7 49 49 H 1.09006 * 109.56790 * 102.81839 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4009 2.1022 -1.3956 5 1 1.4995 2.6227 0.7946 6 1 3.5929 1.4141 0.6010 7 6 2.0102 -1.2022 -0.0005 8 1 3.0603 -1.2193 -0.2526 9 7 1.3635 -2.3663 0.3184 10 6 1.8609 -3.6717 -0.1479 11 6 2.2078 -4.5166 1.0795 12 7 1.1380 -4.4579 2.0662 13 6 1.0546 -5.5441 3.0458 14 1 1.8563 -6.2599 2.8643 15 6 -0.2981 -6.2478 2.9142 16 6 -0.3732 -7.4033 3.9149 17 6 -0.2526 -6.8497 5.3381 18 7 0.9763 -6.0503 5.4351 19 6 1.8869 -6.3045 6.3957 20 8 2.8972 -5.6371 6.4654 21 6 1.6497 -7.4180 7.3830 22 6 2.8256 -7.4932 8.3590 23 6 2.5851 -8.6242 9.3610 24 9 3.6601 -8.6925 10.2539 25 6 1.1914 -4.9694 4.4592 26 6 0.2257 -3.4875 2.1371 27 8 -0.5727 -3.5096 3.0497 28 6 0.1444 -2.3637 1.1406 29 1 -0.4850 0.8400 0.0004 30 1 2.7516 -3.5288 -0.7596 31 1 1.0894 -4.1724 -0.7328 32 1 3.1283 -4.1402 1.5257 33 1 2.3561 -5.5518 0.7723 34 1 -0.4083 -6.6364 1.9019 35 1 -1.0985 -5.5369 3.1196 36 1 0.4419 -8.1018 3.7258 37 1 -1.3275 -7.9186 3.8045 38 1 -1.1154 -6.2219 5.5604 39 1 -0.2086 -7.6751 6.0487 40 1 0.7308 -7.2236 7.9361 41 1 1.5592 -8.3639 6.8490 42 1 3.7448 -7.6875 7.8063 43 1 2.9157 -6.5472 8.8930 44 1 1.6659 -8.4303 9.9139 45 1 2.4953 -9.5700 8.8269 46 1 2.1907 -4.5541 4.5897 47 1 0.4480 -4.1864 4.6089 48 1 0.0600 -1.4122 1.6654 49 1 -0.7271 -2.5069 0.5018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131721659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:56 Heat of formation + Delta-G solvation = -94.561760 kcal Electronic energy + Delta-G solvation = -31028.911904 eV Core-core repulsion = 26712.962924 eV Total energy + Delta-G solvation = -4315.948980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -47.90900 -40.71103 -39.59769 -37.20919 -36.03715 -34.65666 -34.30484 -32.57032 -31.64928 -30.00481 -28.88870 -27.79354 -26.35834 -25.19744 -23.67420 -23.31774 -22.37319 -21.90473 -20.60670 -19.01155 -18.17711 -17.45754 -16.89324 -16.74336 -16.49206 -16.20404 -15.73157 -15.61610 -15.30398 -15.05439 -14.79691 -14.64284 -14.35447 -14.02059 -13.75518 -13.68939 -13.43270 -13.29993 -12.92040 -12.86498 -12.68329 -12.39745 -12.22847 -11.86262 -11.78067 -11.53729 -11.46330 -11.37716 -11.11873 -11.01185 -11.00894 -10.88018 -10.67756 -10.63043 -10.46919 -10.25091 -10.00485 -9.89149 -9.05742 -8.73199 -8.67096 -8.12160 -6.95800 -5.93791 -3.36122 2.50903 2.76499 3.31659 3.34189 3.40673 3.42347 3.55533 4.08054 4.34918 4.37541 4.38385 4.60221 4.64680 4.75404 4.77601 4.83684 4.86329 4.99957 5.08861 5.16367 5.25547 5.27322 5.29730 5.36395 5.45955 5.56640 5.59703 5.63192 5.66583 5.75588 5.85618 5.87100 5.88938 6.01766 6.07045 6.24023 6.27886 6.39308 6.42677 6.56972 6.85490 7.05194 7.20166 7.32313 7.64682 8.05452 8.07874 8.17062 8.77179 9.03524 9.62601 10.16176 11.16310 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.002515 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.609640 B =11129.676946 C =11903.414078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.004 3.996 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.074 0.926 9 N -0.594 5.594 10 C 0.130 3.870 11 C 0.100 3.900 12 N -0.596 5.596 13 C 0.134 3.866 14 H 0.078 0.922 15 C -0.138 4.138 16 C -0.128 4.128 17 C 0.106 3.894 18 N -0.607 5.607 19 C 0.512 3.488 20 O -0.541 6.541 21 C -0.137 4.137 22 C -0.140 4.140 23 C 0.062 3.938 24 F -0.218 7.218 25 C 0.093 3.907 26 C 0.505 3.495 27 O -0.569 6.569 28 C 0.166 3.834 29 H 0.258 0.742 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.116 0.884 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 -20.084 10.927 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.092 0.908 9 N -0.319 5.319 10 C 0.002 3.998 11 C -0.025 4.025 12 N -0.329 5.329 13 C 0.029 3.971 14 H 0.096 0.904 15 C -0.176 4.176 16 C -0.167 4.167 17 C -0.017 4.017 18 N -0.341 5.341 19 C 0.300 3.700 20 O -0.418 6.418 21 C -0.177 4.177 22 C -0.178 4.178 23 C 0.007 3.993 24 F -0.200 7.200 25 C -0.029 4.029 26 C 0.296 3.704 27 O -0.449 6.449 28 C 0.038 3.962 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.121 0.879 48 H 0.134 0.866 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.535 -19.512 11.405 22.607 hybrid contribution 0.409 0.750 -0.204 0.878 sum -0.126 -18.762 11.200 21.852 Atomic orbital electron populations 1.69954 1.05272 1.26104 1.53704 1.25057 0.95449 0.98636 1.00367 0.86190 0.79177 0.83224 0.77656 1.21302 1.21380 1.20286 1.19167 0.92447 0.83942 1.43071 0.90828 1.44168 1.28909 1.01525 1.57272 1.21245 0.98865 0.87164 0.92477 1.22079 0.89636 0.99872 0.90887 1.47401 1.30684 1.23319 1.31514 1.21300 0.97799 0.89243 0.88792 0.90359 1.21973 0.99104 0.97593 0.98964 1.21865 1.02393 0.98036 0.94411 1.21788 0.87207 0.95034 0.97714 1.48182 1.20493 1.34717 1.30671 1.20546 0.82801 0.85050 0.81635 1.90726 1.27544 1.50609 1.72907 1.21567 1.00515 0.98585 0.97030 1.21928 0.99140 0.99773 0.96957 1.22000 0.87187 1.00072 0.90002 1.92777 1.58987 1.97705 1.70481 1.22275 1.04554 0.89744 0.86361 1.22115 0.78502 0.83013 0.86801 1.90493 1.42016 1.77219 1.35209 1.21001 0.90143 0.94803 0.90226 0.93166 0.90528 0.95034 0.92331 0.92046 0.91807 0.88877 0.91778 0.90388 0.90766 0.89930 0.88557 0.88576 0.89911 0.89863 0.90735 0.90755 0.89535 0.87910 0.86650 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.42 11.08 55.49 0.61 -24.80 16 2 C 0.00 0.10 5.01 -17.43 -0.09 0.01 16 3 Si 0.91 21.19 29.58 -169.99 -5.03 16.16 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.69 9.70 -15.06 -0.15 -6.84 16 8 H 0.07 1.85 7.88 -52.49 -0.41 1.44 16 9 N -0.59 -14.04 3.02 -173.71 -0.52 -14.56 16 10 C 0.13 2.39 6.60 -3.63 -0.02 2.37 16 11 C 0.10 1.59 6.45 -4.50 -0.03 1.56 16 12 N -0.60 -10.35 2.79 -167.16 -0.47 -10.81 16 13 C 0.13 1.95 2.62 -67.80 -0.18 1.77 16 14 H 0.08 1.04 7.73 -51.93 -0.40 0.64 16 15 C -0.14 -1.75 5.03 -26.68 -0.13 -1.89 16 16 C -0.13 -1.13 6.08 -26.61 -0.16 -1.29 16 17 C 0.11 0.93 6.33 -3.71 -0.02 0.90 16 18 N -0.61 -7.49 2.98 -172.54 -0.51 -8.00 16 19 C 0.51 6.41 7.70 -10.99 -0.08 6.33 16 20 O -0.54 -9.17 15.42 5.55 0.09 -9.09 16 21 C -0.14 -1.01 4.05 -27.89 -0.11 -1.12 16 22 C -0.14 -1.16 4.96 -26.73 -0.13 -1.29 16 23 C 0.06 0.39 7.55 37.16 0.28 0.67 16 24 F -0.22 -2.16 17.36 2.25 0.04 -2.12 16 25 C 0.09 1.47 5.67 -3.56 -0.02 1.45 16 26 C 0.51 10.48 6.98 -11.75 -0.08 10.40 16 27 O -0.57 -12.34 12.46 5.56 0.07 -12.27 16 28 C 0.17 3.94 5.13 -5.03 -0.03 3.92 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.08 1.32 7.96 -51.93 -0.41 0.91 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.78 7.94 -51.93 -0.41 0.37 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.44 6.09 -51.93 -0.32 1.13 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 40 H 0.10 0.51 7.94 -51.93 -0.41 0.10 16 41 H 0.10 0.48 7.69 -51.93 -0.40 0.08 16 42 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 43 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 44 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 1.56 7.02 -51.93 -0.36 1.19 16 47 H 0.10 1.91 5.67 -51.93 -0.29 1.62 16 48 H 0.12 3.11 6.42 -51.93 -0.33 2.78 16 49 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -32.29 381.94 -8.78 -41.07 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.85 Total: 1.72 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: -0.96 Total: 16.95 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.89 Total: -58.18 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: 0.15 Total: -21.36 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.29 -8.78 -41.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131721659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.492 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds